Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000661

Physical Location & Seq

Genomic Coordinates Reverse (-)

2601071 .. 2601613

Gene Structure 543 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ41883

Sequence Viewer

CDS Protein Promoter (2k)

Length: 543 bp

ATGAAGAGAAAGACGTTGAGGGAACTAGAGGTTGAAACCGCCGTTCAACTACTGCAAAAGCGGCTCAAGCCCCGACCTGCCAAGTACTTGGAAGAGCCCCGGAGCCTAGAGGGTCCATGGAAGGCTGCCTTTCCTGTTGGGACACCAAGGTCACTTTTGGACTCGCCATTCTACCATTCTCTCAAGTGGGATTTCTCGAATCTTGAAGGAGCACTCGAAGAAGGGGGAAAGCTGTATAAGAATAGCAACAGAGTCTATCTATTCGGCTCCACGGAGGAGGCCATGGTTAAAAGAGAAGTGGTTGCTTTGATCCCCGTGGTGGTGGCCGTTGTTTCGGCTTCTCTGCCTTCCAATGAGCTTGGACTTGTTTTAAGTGAGGGAAAAGTGGAAGAGATAATTCCGATGAAGAGATTGAAGACAGACTGGGCTCCGTATGTTCCTTTGGACAAGAGAGTAGACAAAGAAGATCCTGAAATCTTTGTCTTGAGCTGCAAGCAAATAACGGCTGCTCACAAACACAAAAAATGTCAAGGGAAGCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005730 GO:0006950 GO:0007088 GO:0007346 GO:0008150 GO:0009266 GO:0009408 GO:0009628 GO:0009893 GO:0010286 GO:0010369 GO:0010468 GO:0010564 GO:0010604 GO:0010628 GO:0019222 GO:0031974 GO:0031981 GO:0033043 GO:0033044 GO:0033045 GO:0033047 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044464 GO:0048518 GO:0048519 GO:0048523 GO:0048583 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051726 GO:0051783 GO:0051983 GO:0060255 GO:0060968 GO:0060969 GO:0065007 GO:0070013 GO:0080134 GO:0080135 GO:0098687 GO:1900034 GO:1901651

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

180

Amino Acids

20.38

Weight (kDa)

9.24

Isoelectric Point (pI)

51.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000661)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G10010
fragaria_vesca	FvH4_6g03222 FvH4_6g03560 FvH4_6g03561 FvH4_6g03563 FvH4_6g03590 FvH4_6g03590 FvH4_6g09260
malus_domestica	MD04G1220200.v1.1 MD12G1240700.v1.1 MD15G1083500.v1.1
prunus_persica	Prupe.1G436000_v2.0.a1 Prupe.6G174800_v2.0.a1 Prupe.6G339200_v2.0.a1
pyrus_communis	pycom08g08260 pycom15g07800 pycom15g07810
rosa_chinensis	RchiOBHm_Chr3g0451551 RchiOBHm_Chr3g0451591 RchiOBHm_Chr3g0451621 RchiOBHm_Chr3g0452131 RchiOBHm_Chr3g0459621
rosa_laevigata	RLG00000025074 RLG00000025077 RLG00000025626 RLG00000029505 RLG00000035382 RLG00000035384
rosa_multiflora	Rmu_co8173672.1_g000001 Rmu_sc0000240.1_g000011 Rmu_sc0000240.1_g000014 Rmu_sc0004924.1_g000012 Rmu_sc0004924.1_g000020 Rmu_sc0004924.1_g000023 Rmu_sc0004924.1_g000025 Rmu_sc0004924.1_g000034 Rmu_sc0004924.1_g000035 Rmu_sc0009360.1_g000006 Rmu_sc0009360.1_g000008 Rmu_sc0009360.1_g000014 Rmu_sc0009360.1_g000047 Rmu_sc0011887.1_g000001 Rmu_sc0015119.1_g000001 Rmu_sc0023706.1_g000002
rosa_roxburghii	Rroxscaffold_164G00436050 Rroxscaffold_164G00436390 Rroxscaffold_164G00436450 Rroxscaffold_164G00436460 Rroxscaffold_4G00317080 Rroxscaffold_4G00317090 Rroxscaffold_6G00420140 Rroxscaffold_6G00428920
rosa_rugosa	Rorug02G0634200 Rorug02G0634500 Rorug02G0634700 Rorug02G0635400 Rorug02G0638500 Rorug03G0036600 Rorug03G0036700
rosa_samantha	Rh1BG103700 Rh1BG103800 Rh3AG040400 Rh3BG037900 Rh3BG038200 Rh3BG041900 Rh3BG097900 Rh3CG036600 Rh3CG040300 Rh3DG037300 Rh3DG037500 Rh3DG041200 Rh3DG099300
rosa_wichuraiana	Rw0G013830 Rw0G017580 Rw0G017600 Rw3G003070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	148
Acc36I	ACCTGC	1 cut(s)	85
AccI	GTMKAC	1 cut(s)	456
AciI	CCGC	2 cut(s)	39, 61
AclWI	GGATC	2 cut(s)	304, 461
AcoI	YGGCCR	1 cut(s)	324
AfaI	GTAC	1 cut(s)	86
AfiI	CCNNNNNNNGG	1 cut(s)	319
AgsI	TTSAA	4 cut(s)	35, 47, 206, 415
AluBI	AGCT	4 cut(s)	232, 358, 489, 538
AluI	AGCT	4 cut(s)	232, 358, 489, 538
Alw21I	GWGCWC	1 cut(s)	214
AlwI	GGATC	2 cut(s)	304, 461
AoxI	GGCC	2 cut(s)	279, 324
ApeKI	GCWGC	3 cut(s)	125, 489, 506
AspS9I	GGNCC	1 cut(s)	113
AsuC2I	CCSGG	1 cut(s)	100
AvaII	GGWCC	1 cut(s)	113
BanII	GRGCYC	2 cut(s)	99, 430
BbsI	GAAGAC	1 cut(s)	422
Bbv12I	GWGCWC	1 cut(s)	214
BbvI	GCAGC	3 cut(s)	112, 476, 493
BceAI	ACGGC	3 cut(s)	26, 311, 519
BcnI	CCSGG	1 cut(s)	100
BfaI	CTAG	2 cut(s)	26, 107
BfuAI	ACCTGC	1 cut(s)	85
BisI	GCNGC	4 cut(s)	62, 126, 490, 507
BlsI	GCNGC	4 cut(s)	63, 127, 491, 508
BmcAI	AGTACT	1 cut(s)	86
Bme1390I	CCNGG	1 cut(s)	100
Bme18I	GGWCC	1 cut(s)	113
BmgT120I	GGNCC	1 cut(s)	113
BmiI	GGNNCC	4 cut(s)	104, 114, 268, 429
BmrFI	CCNGG	1 cut(s)	100
BmrI	ACTGGG	1 cut(s)	433
BmuI	ACTGGG	1 cut(s)	433
BpiI	GAAGAC	1 cut(s)	422
BpuEI	CTTGAG	3 cut(s)	50, 167, 505
BpuMI	CCSGG	1 cut(s)	100
BsaJI	CCNNGG	6 cut(s)	98, 116, 146, 270, 282, 315
Bsc4I	CCNNNNNNNGG	1 cut(s)	319
Bse1I	ACTGG	1 cut(s)	428
BseDI	CCNNGG	6 cut(s)	98, 116, 146, 270, 282, 315
BseLI	CCNNNNNNNGG	1 cut(s)	319
BseNI	ACTGG	1 cut(s)	428
BseRI	GAGGAG	1 cut(s)	290
BseXI	GCAGC	3 cut(s)	112, 476, 493
BshFI	GGCC	2 cut(s)	281, 326
BsiHKAI	GWGCWC	1 cut(s)	214
BsiSI	CCGG	1 cut(s)	100
BslFI	GGGAC	1 cut(s)	154
BslI	CCNNNNNNNGG	1 cut(s)	319
BsmFI	GGGAC	1 cut(s)	154
BsnI	GGCC	2 cut(s)	281, 326
Bsp1286I	GDGCHC	3 cut(s)	99, 214, 430
Bsp143I	GATC	2 cut(s)	309, 466
Bsp19I	CCATGG	2 cut(s)	116, 282
BspACI	CCGC	2 cut(s)	39, 61
BspANI	GGCC	2 cut(s)	281, 326
BspLI	GGNNCC	4 cut(s)	104, 114, 268, 429
BspMI	ACCTGC	1 cut(s)	85
BspPI	GGATC	2 cut(s)	304, 461
BspQI	GCTCTTC	1 cut(s)	87
BsrI	ACTGG	1 cut(s)	428
BssECI	CCNNGG	6 cut(s)	98, 116, 146, 270, 282, 315
BssMI	GATC	2 cut(s)	309, 466
BssT1I	CCWWGG	3 cut(s)	116, 146, 282
Bst6I	CTCTTC	3 cut(s)	87, 384, 401
BstC8I	GCNNGC	1 cut(s)	494
BstDSI	CCRYGG	4 cut(s)	116, 270, 282, 315
BstKTI	GATC	2 cut(s)	312, 469
BstMBI	GATC	2 cut(s)	309, 466
BstMWI	GCNNNNNNNGC	2 cut(s)	61, 67
BstSCI	CCNGG	1 cut(s)	98
BstV1I	GCAGC	3 cut(s)	112, 476, 493
BstV2I	GAAGAC	1 cut(s)	422
BstX2I	RGATCY	1 cut(s)	466
BstXI	CCANNNNNNTGG	1 cut(s)	88
BstYI	RGATCY	1 cut(s)	466
BsuRI	GGCC	2 cut(s)	281, 326
BtgI	CCRYGG	4 cut(s)	116, 270, 282, 315
BveI	ACCTGC	1 cut(s)	85
Cac8I	GCNNGC	1 cut(s)	494
Cfr13I	GGNCC	1 cut(s)	113
Csp6I	GTAC	1 cut(s)	85
CviAII	CATG	2 cut(s)	117, 283
CviQI	GTAC	1 cut(s)	85
DpnI	GATC	2 cut(s)	311, 468
DpnII	GATC	2 cut(s)	309, 466
DrdI	GACNNNNNNGTC	1 cut(s)	148
DseDI	GACNNNNNNGTC	1 cut(s)	148
EaeI	YGGCCR	1 cut(s)	324
Eam1104I	CTCTTC	3 cut(s)	87, 384, 401
EarI	CTCTTC	3 cut(s)	87, 384, 401
Eco130I	CCWWGG	3 cut(s)	116, 146, 282
Eco24I	GRGCYC	2 cut(s)	99, 430
Eco47I	GGWCC	1 cut(s)	113
EcoT14I	CCWWGG	3 cut(s)	116, 146, 282
EcoT38I	GRGCYC	2 cut(s)	99, 430
ErhI	CCWWGG	3 cut(s)	116, 146, 282
FaeI	CATG	2 cut(s)	120, 286
FaiI	YATR	4 cut(s)	118, 237, 284, 435
FalI	AAGNNNNNCTT	2 cut(s)	113, 145
FaqI	GGGAC	1 cut(s)	154
FatI	CATG	2 cut(s)	116, 282
FblI	GTMKAC	1 cut(s)	456
Fnu4HI	GCNGC	4 cut(s)	62, 126, 490, 507
FriOI	GRGCYC	2 cut(s)	99, 430
Fsp4HI	GCNGC	4 cut(s)	62, 126, 490, 507
FspBI	CTAG	2 cut(s)	26, 107
GluI	GCNGC	4 cut(s)	62, 126, 490, 507
HaeIII	GGCC	2 cut(s)	281, 326
HapII	CCGG	1 cut(s)	100
Hin1II	CATG	2 cut(s)	120, 286
HinfI	GANTC	3 cut(s)	161, 199, 252
HpaII	CCGG	1 cut(s)	100
Hpy166II	GTNNAC	1 cut(s)	457
Hpy188I	TCNGA	1 cut(s)	402
Hpy188III	TCNNGA	4 cut(s)	196, 203, 470, 484
Hpy8I	GTNNAC	1 cut(s)	457
HpyAV	CCTTC	4 cut(s)	115, 200, 215, 357
HpyCH4IV	ACGT	1 cut(s)	14
HpyCH4V	TGCA	2 cut(s)	55, 492
HpyF10VI	GCNNNNNNNGC	2 cut(s)	61, 67
HpySE526I	ACGT	1 cut(s)	14
Hsp92II	CATG	2 cut(s)	120, 286
Kzo9I	GATC	2 cut(s)	309, 466
LguI	GCTCTTC	1 cut(s)	87
LmnI	GCTCC	4 cut(s)	102, 209, 272, 433
LpnPI	CCDG	5 cut(s)	90, 113, 147, 409, 483
Lsp1109I	GCAGC	3 cut(s)	112, 476, 493
MaeI	CTAG	2 cut(s)	26, 107
MaeII	ACGT	1 cut(s)	14
MaeIII	GTNAC	1 cut(s)	150
MalI	GATC	2 cut(s)	311, 468
MboI	GATC	2 cut(s)	309, 466
MboII	GAAGA	7 cut(s)	16, 104, 230, 401, 418, 427, 476
MflI	RGATCY	1 cut(s)	466
MhlI	GDGCHC	3 cut(s)	99, 214, 430
MluCI	AATT	1 cut(s)	396
MlyI	GAGTC	2 cut(s)	155, 261
MnlI	CCTC	6 cut(s)	12, 22, 103, 268, 271, 370
MseI	TTAA	2 cut(s)	288, 371
MspI	CCGG	1 cut(s)	100
MspR9I	CCNGG	1 cut(s)	100
MwoI	GCNNNNNNNGC	2 cut(s)	61, 67
NciI	CCSGG	1 cut(s)	100
NcoI	CCATGG	2 cut(s)	116, 282
NdeII	GATC	2 cut(s)	309, 466
NlaIII	CATG	2 cut(s)	120, 286
NlaIV	GGNNCC	4 cut(s)	104, 114, 268, 429
NmuCI	GTSAC	1 cut(s)	150
PciSI	GCTCTTC	1 cut(s)	87
PfeI	GAWTC	1 cut(s)	199
PkrI	GCNGC	4 cut(s)	63, 127, 491, 508
PleI	GAGTC	2 cut(s)	155, 260
PpsI	GAGTC	2 cut(s)	155, 260
PspN4I	GGNNCC	4 cut(s)	104, 114, 268, 429
PspPI	GGNCC	1 cut(s)	113
PsuI	RGATCY	1 cut(s)	466
RsaI	GTAC	1 cut(s)	86
RsaNI	GTAC	1 cut(s)	85
SapI	GCTCTTC	1 cut(s)	87
SaqAI	TTAA	2 cut(s)	288, 371
SatI	GCNGC	4 cut(s)	62, 126, 490, 507
Sau3AI	GATC	2 cut(s)	309, 466
Sau96I	GGNCC	1 cut(s)	113
ScaI	AGTACT	1 cut(s)	86
SchI	GAGTC	2 cut(s)	155, 261
ScrFI	CCNGG	1 cut(s)	100
SduI	GDGCHC	3 cut(s)	99, 214, 430
SetI	ASST	8 cut(s)	17, 33, 79, 152, 234, 360, 491, 540
SinI	GGWCC	1 cut(s)	113
SmlI	CTYRAG	3 cut(s)	65, 182, 484
SmoI	CTYRAG	3 cut(s)	65, 182, 484
Sse9I	AATT	1 cut(s)	396
SsiI	CCGC	2 cut(s)	39, 61
SspMI	CTAG	2 cut(s)	26, 107
StyD4I	CCNGG	1 cut(s)	98
StyI	CCWWGG	3 cut(s)	116, 146, 282
TaiI	ACGT	1 cut(s)	17
TaqI	TCGA	2 cut(s)	197, 216
TasI	AATT	1 cut(s)	396
TatI	WGTACW	1 cut(s)	84
TauI	GCSGC	1 cut(s)	64
TfiI	GAWTC	1 cut(s)	199
Tru1I	TTAA	2 cut(s)	288, 371
Tru9I	TTAA	2 cut(s)	288, 371
TseFI	GTSAC	1 cut(s)	150
TseI	GCWGC	3 cut(s)	125, 489, 506
Tsp45I	GTSAC	1 cut(s)	150
TspDTI	ATGAA	2 cut(s)	17, 419
TspGWI	ACGGA	2 cut(s)	287, 420
VpaK11BI	GGWCC	1 cut(s)	113
XmiI	GTMKAC	1 cut(s)	456
XspI	CTAG	2 cut(s)	26, 107
ZrmI	AGTACT	1 cut(s)	86

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.