Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000164

Orthogroup ID

OG0000661

Physical Location & Seq

Genomic Coordinates Forward (+)

350922 .. 355454

Gene Structure 4533 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_164G00436450.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 504 bp

ATGCTTGGATCGAAGCCACCCCGGCCTCCGCCGGCCGGCCAGGCCGGCGGAAAACGAGTTCCGGCGTTGTACGGGCCGATCCTTCCCACCATGGCAATTGTCTTTAATCAACTTCTGAGGGCGATGAAGAGAAAGACGTTGAGGGAACTAGAGGTTGAAACCGCCGTTCAGCTACTGCAAAAGCGGCTCAAGCCCCGACCTGCCAAGTACTTGGAGGAGCCCCGGAGCCTAGAGGGTCCATGGAAGGCTGCCTTTCCTGCTGGGACACCAAGGTCACTTTTGGACTCGCCACTCTTCCATTCTTTCAAGTGGGATTTCTCGAATCTTGAAGGAGCACTCGAAGAAGGGGGAAAGCTGTACAAGAATAGCAACAGAGTCTATATATTCGGCTCCACGAAGGAGGCCATGGTTAAAACAGAAGTGGTTGCTTTGATCCCGGCCAGTACGTGGTGGTGGCCGTTATTTCGGCTTCTCCGCCTTCCAATGAGCTTGGACTTGTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005730 GO:0006950 GO:0007088 GO:0007346 GO:0008150 GO:0009266 GO:0009408 GO:0009628 GO:0009893 GO:0010286 GO:0010369 GO:0010468 GO:0010564 GO:0010604 GO:0010628 GO:0019222 GO:0031974 GO:0031981 GO:0033043 GO:0033044 GO:0033045 GO:0033047 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044464 GO:0048518 GO:0048519 GO:0048523 GO:0048583 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051726 GO:0051783 GO:0051983 GO:0060255 GO:0060968 GO:0060969 GO:0065007 GO:0070013 GO:0080134 GO:0080135 GO:0098687 GO:1900034 GO:1901651

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

167

Amino Acids

18.87

Weight (kDa)

10.14

Isoelectric Point (pI)

47.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000661)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G10010
fragaria_vesca	FvH4_6g03222 FvH4_6g03560 FvH4_6g03561 FvH4_6g03563 FvH4_6g03590 FvH4_6g03590 FvH4_6g09260
malus_domestica	MD04G1220200.v1.1 MD12G1240700.v1.1 MD15G1083500.v1.1
prunus_persica	Prupe.1G436000_v2.0.a1 Prupe.6G174800_v2.0.a1 Prupe.6G339200_v2.0.a1
pyrus_communis	pycom08g08260 pycom15g07800 pycom15g07810
rosa_chinensis	RchiOBHm_Chr3g0451551 RchiOBHm_Chr3g0451591 RchiOBHm_Chr3g0451621 RchiOBHm_Chr3g0452131 RchiOBHm_Chr3g0459621
rosa_laevigata	RLG00000025074 RLG00000025077 RLG00000025626 RLG00000029505 RLG00000035382 RLG00000035384
rosa_multiflora	Rmu_co8173672.1_g000001 Rmu_sc0000240.1_g000011 Rmu_sc0000240.1_g000014 Rmu_sc0004924.1_g000012 Rmu_sc0004924.1_g000020 Rmu_sc0004924.1_g000023 Rmu_sc0004924.1_g000025 Rmu_sc0004924.1_g000034 Rmu_sc0004924.1_g000035 Rmu_sc0009360.1_g000006 Rmu_sc0009360.1_g000008 Rmu_sc0009360.1_g000014 Rmu_sc0009360.1_g000047 Rmu_sc0011887.1_g000001 Rmu_sc0015119.1_g000001 Rmu_sc0023706.1_g000002
rosa_roxburghii	Rroxscaffold_164G00436050 Rroxscaffold_164G00436390 Rroxscaffold_164G00436450 Rroxscaffold_164G00436460 Rroxscaffold_4G00317080 Rroxscaffold_4G00317090 Rroxscaffold_6G00420140 Rroxscaffold_6G00428920
rosa_rugosa	Rorug02G0634200 Rorug02G0634500 Rorug02G0634700 Rorug02G0635400 Rorug02G0638500 Rorug03G0036600 Rorug03G0036700
rosa_samantha	Rh1BG103700 Rh1BG103800 Rh3AG040400 Rh3BG037900 Rh3BG038200 Rh3BG041900 Rh3BG097900 Rh3CG036600 Rh3CG040300 Rh3DG037300 Rh3DG037500 Rh3DG041200 Rh3DG099300
rosa_wichuraiana	Rw0G013830 Rw0G017580 Rw0G017600 Rw3G003070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	271
Acc36I	ACCTGC	1 cut(s)	208
AccB7I	CCANNNNNTGG	1 cut(s)	447
AciI	CCGC	5 cut(s)	29, 48, 162, 184, 475
AclWI	GGATC	3 cut(s)	16, 73, 427
AcoI	YGGCCR	4 cut(s)	33, 37, 438, 455
AfaI	GTAC	4 cut(s)	71, 209, 359, 445
AfiI	CCNNNNNNNGG	2 cut(s)	35, 447
AgsI	TTSAA	3 cut(s)	158, 307, 329
AjnI	CCWGG	1 cut(s)	39
AloI	GAACNNNNNNTCC	2 cut(s)	42, 74
AluBI	AGCT	3 cut(s)	172, 355, 489
AluI	AGCT	3 cut(s)	172, 355, 489
Alw21I	GWGCWC	1 cut(s)	337
AlwI	GGATC	3 cut(s)	16, 73, 427
AlwNI	CAGNNNCTG	1 cut(s)	175
AoxI	GGCC	8 cut(s)	23, 33, 37, 42, 74, 402, 438, 455
ApeKI	GCWGC	1 cut(s)	248
AspS9I	GGNCC	2 cut(s)	74, 236
AsuC2I	CCSGG	3 cut(s)	22, 223, 437
AvaII	GGWCC	1 cut(s)	236
BanII	GRGCYC	1 cut(s)	222
Bbv12I	GWGCWC	1 cut(s)	337
BbvI	GCAGC	1 cut(s)	235
BceAI	ACGGC	2 cut(s)	149, 442
BciT130I	CCWGG	1 cut(s)	41
BcnI	CCSGG	3 cut(s)	22, 223, 437
BfaI	CTAG	2 cut(s)	149, 230
BfuAI	ACCTGC	1 cut(s)	208
BglI	GCCNNNNNGGC	3 cut(s)	22, 41, 45
BisI	GCNGC	2 cut(s)	185, 249
BlsI	GCNGC	2 cut(s)	186, 250
BmcAI	AGTACT	1 cut(s)	209
Bme1390I	CCNGG	4 cut(s)	22, 41, 223, 437
Bme18I	GGWCC	1 cut(s)	236
BmgT120I	GGNCC	2 cut(s)	74, 236
BmiI	GGNNCC	4 cut(s)	219, 227, 237, 391
BmrFI	CCNGG	4 cut(s)	22, 41, 223, 437
BpuEI	CTTGAG	1 cut(s)	173
BpuMI	CCSGG	3 cut(s)	22, 223, 437
BsaAI	YACGTR	1 cut(s)	447
BsaJI	CCNNGG	6 cut(s)	20, 90, 221, 239, 269, 405
Bsc4I	CCNNNNNNNGG	2 cut(s)	35, 447
Bse118I	RCCGGY	3 cut(s)	31, 35, 44
Bse1I	ACTGG	1 cut(s)	441
BseBI	CCWGG	1 cut(s)	41
BseDI	CCNNGG	6 cut(s)	20, 90, 221, 239, 269, 405
BseLI	CCNNNNNNNGG	2 cut(s)	35, 447
BseMII	CTCAG	1 cut(s)	107
BseNI	ACTGG	1 cut(s)	441
BseRI	GAGGAG	1 cut(s)	230
BseX3I	CGGCCG	1 cut(s)	33
BseXI	GCAGC	1 cut(s)	235
BseYI	CCCAGC	1 cut(s)	260
Bsh1285I	CGRYCG	1 cut(s)	36
BshFI	GGCC	8 cut(s)	25, 35, 39, 44, 76, 404, 440, 457
BsiEI	CGRYCG	1 cut(s)	36
BsiHKAI	GWGCWC	1 cut(s)	337
BsiSI	CCGG	7 cut(s)	22, 32, 36, 45, 62, 223, 437
BslFI	GGGAC	1 cut(s)	277
BslI	CCNNNNNNNGG	2 cut(s)	35, 447
BsmFI	GGGAC	1 cut(s)	277
BsnI	GGCC	8 cut(s)	25, 35, 39, 44, 76, 404, 440, 457
Bsp1286I	GDGCHC	2 cut(s)	222, 337
Bsp1407I	TGTACA	1 cut(s)	357
Bsp143I	GATC	3 cut(s)	8, 78, 432
Bsp19I	CCATGG	3 cut(s)	90, 239, 405
BspACI	CCGC	5 cut(s)	29, 48, 162, 184, 475
BspANI	GGCC	8 cut(s)	25, 35, 39, 44, 76, 404, 440, 457
BspCNI	CTCAG	1 cut(s)	108
BspLI	GGNNCC	4 cut(s)	219, 227, 237, 391
BspMI	ACCTGC	1 cut(s)	208
BspPI	GGATC	3 cut(s)	16, 73, 427
BsrFI	RCCGGY	3 cut(s)	31, 35, 44
BsrGI	TGTACA	1 cut(s)	357
BsrI	ACTGG	1 cut(s)	441
BssAI	RCCGGY	3 cut(s)	31, 35, 44
BssECI	CCNNGG	6 cut(s)	20, 90, 221, 239, 269, 405
BssMI	GATC	3 cut(s)	8, 78, 432
BssT1I	CCWWGG	4 cut(s)	90, 239, 269, 405
Bst2UI	CCWGG	1 cut(s)	41
Bst6I	CTCTTC	2 cut(s)	122, 299
BstAUI	TGTACA	1 cut(s)	357
BstBAI	YACGTR	1 cut(s)	447
BstC8I	GCNNGC	3 cut(s)	33, 37, 46
BstDEI	CTNAG	1 cut(s)	116
BstDSI	CCRYGG	3 cut(s)	90, 239, 405
BstKTI	GATC	3 cut(s)	11, 81, 435
BstMBI	GATC	3 cut(s)	8, 78, 432
BstMCI	CGRYCG	1 cut(s)	36
BstMWI	GCNNNNNNNGC	6 cut(s)	22, 41, 45, 184, 190, 257
BstNI	CCWGG	1 cut(s)	41
BstSCI	CCNGG	4 cut(s)	20, 39, 221, 435
BstV1I	GCAGC	1 cut(s)	235
BstXI	CCANNNNNNTGG	1 cut(s)	211
BstZI	CGGCCG	1 cut(s)	33
BsuRI	GGCC	8 cut(s)	25, 35, 39, 44, 76, 404, 440, 457
BtgI	CCRYGG	3 cut(s)	90, 239, 405
BtgZI	GCGATG	1 cut(s)	137
BveI	ACCTGC	1 cut(s)	208
Cac8I	GCNNGC	3 cut(s)	33, 37, 46
CaiI	CAGNNNCTG	1 cut(s)	175
Cfr10I	RCCGGY	3 cut(s)	31, 35, 44
Cfr13I	GGNCC	2 cut(s)	74, 236
Csp6I	GTAC	4 cut(s)	70, 208, 358, 444
CviAII	CATG	3 cut(s)	91, 240, 406
CviQI	GTAC	4 cut(s)	70, 208, 358, 444
DdeI	CTNAG	1 cut(s)	116
DpnI	GATC	3 cut(s)	10, 80, 434
DpnII	GATC	3 cut(s)	8, 78, 432
DrdI	GACNNNNNNGTC	1 cut(s)	271
DseDI	GACNNNNNNGTC	1 cut(s)	271
EaeI	YGGCCR	4 cut(s)	33, 37, 438, 455
EagI	CGGCCG	1 cut(s)	33
Eam1104I	CTCTTC	2 cut(s)	122, 299
EarI	CTCTTC	2 cut(s)	122, 299
EciI	GGCGGA	3 cut(s)	18, 63, 464
EclXI	CGGCCG	1 cut(s)	33
Eco130I	CCWWGG	4 cut(s)	90, 239, 269, 405
Eco24I	GRGCYC	1 cut(s)	222
Eco47I	GGWCC	1 cut(s)	236
Eco52I	CGGCCG	1 cut(s)	33
EcoRII	CCWGG	1 cut(s)	39
EcoT14I	CCWWGG	4 cut(s)	90, 239, 269, 405
EcoT38I	GRGCYC	1 cut(s)	222
ErhI	CCWWGG	4 cut(s)	90, 239, 269, 405
FaeI	CATG	3 cut(s)	94, 243, 409
FaiI	YATR	5 cut(s)	92, 241, 381, 383, 407
FalI	AAGNNNNNCTT	2 cut(s)	236, 268
FaqI	GGGAC	1 cut(s)	277
FatI	CATG	3 cut(s)	90, 239, 405
Fnu4HI	GCNGC	2 cut(s)	185, 249
FriOI	GRGCYC	1 cut(s)	222
FseI	GGCCGGCC	1 cut(s)	39
Fsp4HI	GCNGC	2 cut(s)	185, 249
FspBI	CTAG	2 cut(s)	149, 230
GluI	GCNGC	2 cut(s)	185, 249
GsaI	CCCAGC	1 cut(s)	264
HaeIII	GGCC	8 cut(s)	25, 35, 39, 44, 76, 404, 440, 457
HapII	CCGG	7 cut(s)	22, 32, 36, 45, 62, 223, 437
Hin1II	CATG	3 cut(s)	94, 243, 409
HinfI	GANTC	3 cut(s)	284, 322, 375
HpaII	CCGG	7 cut(s)	22, 32, 36, 45, 62, 223, 437
Hpy188I	TCNGA	1 cut(s)	117
Hpy188III	TCNNGA	2 cut(s)	319, 326
HpyAV	CCTTC	6 cut(s)	92, 238, 323, 338, 391, 488
HpyCH4IV	ACGT	2 cut(s)	137, 446
HpyCH4V	TGCA	1 cut(s)	178
HpyF10VI	GCNNNNNNNGC	6 cut(s)	22, 41, 45, 184, 190, 257
HpyF3I	CTNAG	1 cut(s)	116
HpySE526I	ACGT	2 cut(s)	137, 446
Hsp92II	CATG	3 cut(s)	94, 243, 409
KroI	GCCGGC	3 cut(s)	31, 35, 44
KroNI	GCCGGC	3 cut(s)	33, 37, 46
Kzo9I	GATC	3 cut(s)	8, 78, 432
LmnI	GCTCC	4 cut(s)	217, 225, 332, 395
Lsp1109I	GCAGC	1 cut(s)	235
MaeI	CTAG	2 cut(s)	149, 230
MaeII	ACGT	2 cut(s)	137, 446
MaeIII	GTNAC	1 cut(s)	273
MalI	GATC	3 cut(s)	10, 80, 434
MboI	GATC	3 cut(s)	8, 78, 432
MboII	GAAGA	3 cut(s)	139, 286, 353
MfeI	CAATTG	1 cut(s)	96
MhlI	GDGCHC	2 cut(s)	222, 337
MluCI	AATT	1 cut(s)	96
MlyI	GAGTC	2 cut(s)	278, 384
MnlI	CCTC	7 cut(s)	36, 111, 135, 145, 208, 226, 394
MroNI	GCCGGC	3 cut(s)	31, 35, 44
MseI	TTAA	3 cut(s)	105, 411, 502
MspI	CCGG	7 cut(s)	22, 32, 36, 45, 62, 223, 437
MspR9I	CCNGG	4 cut(s)	22, 41, 223, 437
MunI	CAATTG	1 cut(s)	96
MvaI	CCWGG	1 cut(s)	41
MwoI	GCNNNNNNNGC	6 cut(s)	22, 41, 45, 184, 190, 257
NaeI	GCCGGC	3 cut(s)	33, 37, 46
NciI	CCSGG	3 cut(s)	22, 223, 437
NcoI	CCATGG	3 cut(s)	90, 239, 405
NdeII	GATC	3 cut(s)	8, 78, 432
NgoMIV	GCCGGC	3 cut(s)	31, 35, 44
NlaIII	CATG	3 cut(s)	94, 243, 409
NlaIV	GGNNCC	4 cut(s)	219, 227, 237, 391
NmuCI	GTSAC	1 cut(s)	273
PdiI	GCCGGC	3 cut(s)	33, 37, 46
PfeI	GAWTC	1 cut(s)	322
PflMI	CCANNNNNTGG	1 cut(s)	447
PkrI	GCNGC	2 cut(s)	186, 250
PleI	GAGTC	2 cut(s)	278, 383
PpsI	GAGTC	2 cut(s)	278, 383
Ppu21I	YACGTR	1 cut(s)	447
Psp6I	CCWGG	1 cut(s)	39
PspFI	CCCAGC	1 cut(s)	260
PspGI	CCWGG	1 cut(s)	39
PspN4I	GGNNCC	4 cut(s)	219, 227, 237, 391
PspPI	GGNCC	2 cut(s)	74, 236
PstNI	CAGNNNCTG	1 cut(s)	175
RigI	GGCCGGCC	1 cut(s)	39
RsaI	GTAC	4 cut(s)	71, 209, 359, 445
RsaNI	GTAC	4 cut(s)	70, 208, 358, 444
SaqAI	TTAA	3 cut(s)	105, 411, 502
SatI	GCNGC	2 cut(s)	185, 249
Sau3AI	GATC	3 cut(s)	8, 78, 432
Sau96I	GGNCC	2 cut(s)	74, 236
ScaI	AGTACT	1 cut(s)	209
SchI	GAGTC	2 cut(s)	278, 384
ScrFI	CCNGG	4 cut(s)	22, 41, 223, 437
SduI	GDGCHC	2 cut(s)	222, 337
SetI	ASST	8 cut(s)	140, 156, 174, 202, 275, 357, 449, 491
SfiI	GGCCNNNNNGGCC	1 cut(s)	41
SinI	GGWCC	1 cut(s)	236
SmlI	CTYRAG	1 cut(s)	188
SmoI	CTYRAG	1 cut(s)	188
Sse9I	AATT	1 cut(s)	96
SsiI	CCGC	5 cut(s)	29, 48, 162, 184, 475
SspMI	CTAG	2 cut(s)	149, 230
StyD4I	CCNGG	4 cut(s)	20, 39, 221, 435
StyI	CCWWGG	4 cut(s)	90, 239, 269, 405
TaiI	ACGT	2 cut(s)	140, 449
TaqI	TCGA	3 cut(s)	11, 320, 339
TasI	AATT	1 cut(s)	96
TatI	WGTACW	2 cut(s)	207, 357
TauI	GCSGC	1 cut(s)	187
TfiI	GAWTC	1 cut(s)	322
Tru1I	TTAA	3 cut(s)	105, 411, 502
Tru9I	TTAA	3 cut(s)	105, 411, 502
TseFI	GTSAC	1 cut(s)	273
TseI	GCWGC	1 cut(s)	248
Tsp45I	GTSAC	1 cut(s)	273
TspDTI	ATGAA	1 cut(s)	140
Van91I	CCANNNNNTGG	1 cut(s)	447
VpaK11BI	GGWCC	1 cut(s)	236
XspI	CTAG	2 cut(s)	149, 230
ZrmI	AGTACT	1 cut(s)	209

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.