Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0000661

Physical Location & Seq

Genomic Coordinates Reverse (-)

41816552 .. 41817580

Gene Structure 1029 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000025077

Sequence Viewer

CDS Protein Promoter (2k)

Length: 909 bp

ATGAGCAAAGAAGCCAAGAGAAAGGCTCGGCCGGCTGCAACGGAGGAGGCCAAAGCCACCACCACACTCGCCAAGCGCGTTAAGGCCTCTCAGCAGCATCCGGAGGCGGAGCCTCAGTACGTGGAGGAGAAGCCCAACCTTCAAGACCTTTGGAAAGCAGCATTCCCGGTCGGGACCGAGTGGGATCAGTTGGACTCATCGCCGTCGCTGCCTGTACTAATTCCGACACTGGTGGCGGTCGTGGCTCCTCGGCCGCCTTCAATGGAGATTGGGATAAGGTCGGTGCAGAGAGAAGAGGAGATAGTTCCAATGAAGTATATGAAGATGGACTGGATCCCCTACATTCCTATGGAGCTCAGAGAAGGCTGGAATTCCGAAAGAGCGGCCAAGTCTGGTTCGAACTTGCCTCAGATTTTCGTGCTGGGATGTACTCAGAGGAAGGCGAGCTTGAAGCAGATGAAGGAGGACCTTTGGATGAAATTCCAGTACTGTGTGCCGTATTTGTGTAATCCGAAGAACGAAGAGGACAAAGAGCGGGTGTACGTACTGTGGTGGATATCCTCTTCCCACAGGAGCCGCAAGCACCACTGTTTGTACAATTCGATTGGGACATGGATGAAGTTGAGGACTTCACTGATGAACTTATATATAGAGGCTGAGGAGTTGAGCGAGGATAAGAAGGAGGCATTCATGGAGTTTTTGAAGGAGGAAGTAAAGAACGCTAAGAAGAAGAAGAGGGAAGCGAGGAAGGAGAGAATGGAGGACCCAAAGTATCAGGAAGCTAAAACCTATTATGAGAATATAAGGCTTTATAAGATATACCCAGTTCAAACACCAAACACACCTTTGATAGAGAAGAAGGCTCGTCGTATCAACTTCTACTACGGAAATGCCGATGAGATTATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005730 GO:0006950 GO:0007088 GO:0007346 GO:0008150 GO:0009266 GO:0009408 GO:0009628 GO:0009893 GO:0010286 GO:0010369 GO:0010468 GO:0010564 GO:0010604 GO:0010628 GO:0019222 GO:0031974 GO:0031981 GO:0033043 GO:0033044 GO:0033045 GO:0033047 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044464 GO:0048518 GO:0048519 GO:0048523 GO:0048583 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051726 GO:0051783 GO:0051983 GO:0060255 GO:0060968 GO:0060969 GO:0065007 GO:0070013 GO:0080134 GO:0080135 GO:0098687 GO:1900034 GO:1901651

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

303

Amino Acids

35.54

Weight (kDa)

9.13

Isoelectric Point (pI)

63.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000661)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G10010
fragaria_vesca	FvH4_6g03222 FvH4_6g03560 FvH4_6g03561 FvH4_6g03563 FvH4_6g03590 FvH4_6g03590 FvH4_6g09260
malus_domestica	MD04G1220200.v1.1 MD12G1240700.v1.1 MD15G1083500.v1.1
prunus_persica	Prupe.1G436000_v2.0.a1 Prupe.6G174800_v2.0.a1 Prupe.6G339200_v2.0.a1
pyrus_communis	pycom08g08260 pycom15g07800 pycom15g07810
rosa_chinensis	RchiOBHm_Chr3g0451551 RchiOBHm_Chr3g0451591 RchiOBHm_Chr3g0451621 RchiOBHm_Chr3g0452131 RchiOBHm_Chr3g0459621
rosa_laevigata	RLG00000025074 RLG00000025077 RLG00000025626 RLG00000029505 RLG00000035382 RLG00000035384
rosa_multiflora	Rmu_co8173672.1_g000001 Rmu_sc0000240.1_g000011 Rmu_sc0000240.1_g000014 Rmu_sc0004924.1_g000012 Rmu_sc0004924.1_g000020 Rmu_sc0004924.1_g000023 Rmu_sc0004924.1_g000025 Rmu_sc0004924.1_g000034 Rmu_sc0004924.1_g000035 Rmu_sc0009360.1_g000006 Rmu_sc0009360.1_g000008 Rmu_sc0009360.1_g000014 Rmu_sc0009360.1_g000047 Rmu_sc0011887.1_g000001 Rmu_sc0015119.1_g000001 Rmu_sc0023706.1_g000002
rosa_roxburghii	Rroxscaffold_164G00436050 Rroxscaffold_164G00436390 Rroxscaffold_164G00436450 Rroxscaffold_164G00436460 Rroxscaffold_4G00317080 Rroxscaffold_4G00317090 Rroxscaffold_6G00420140 Rroxscaffold_6G00428920
rosa_rugosa	Rorug02G0634200 Rorug02G0634500 Rorug02G0634700 Rorug02G0635400 Rorug02G0638500 Rorug03G0036600 Rorug03G0036700
rosa_samantha	Rh1BG103700 Rh1BG103800 Rh3AG040400 Rh3BG037900 Rh3BG038200 Rh3BG041900 Rh3BG097900 Rh3CG036600 Rh3CG040300 Rh3DG037300 Rh3DG037500 Rh3DG041200 Rh3DG099300
rosa_wichuraiana	Rw0G013830 Rw0G017580 Rw0G017600 Rw3G003070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	813
AccBSI	CCGCTC	2 cut(s)	383, 535
AccII	CGCG	1 cut(s)	78
AccIII	TCCGGA	1 cut(s)	100
AciI	CCGC	6 cut(s)	107, 236, 254, 383, 535, 577
AclWI	GGATC	3 cut(s)	192, 328, 341
AcoI	YGGCCR	3 cut(s)	29, 251, 384
AcsI	RAATTY	2 cut(s)	370, 479
AfaI	GTAC	7 cut(s)	119, 216, 430, 488, 542, 546, 596
AgsI	TTSAA	5 cut(s)	143, 261, 451, 703, 830
AluBI	AGCT	3 cut(s)	355, 447, 782
AluI	AGCT	3 cut(s)	355, 447, 782
Alw21I	GWGCWC	1 cut(s)	357
AlwI	GGATC	3 cut(s)	192, 328, 341
Aor13HI	TCCGGA	1 cut(s)	100
AoxI	GGCC	5 cut(s)	29, 48, 84, 251, 384
ApeKI	GCWGC	4 cut(s)	35, 94, 158, 208
ApoI	RAATTY	2 cut(s)	370, 479
AspLEI	GCGC	1 cut(s)	78
AspS9I	GGNCC	3 cut(s)	174, 466, 763
AsuC2I	CCSGG	1 cut(s)	167
AsuII	TTCGAA	1 cut(s)	398
AvaII	GGWCC	3 cut(s)	174, 466, 763
BamHI	GGATCC	1 cut(s)	333
BanII	GRGCYC	1 cut(s)	357
Bbv12I	GWGCWC	1 cut(s)	357
BbvCI	CCTCAGC	1 cut(s)	657
BbvI	GCAGC	4 cut(s)	22, 106, 170, 195
BccI	CCATC	1 cut(s)	319
BceAI	ACGGC	2 cut(s)	187, 481
BcnI	CCSGG	1 cut(s)	167
BisI	GCNGC	7 cut(s)	36, 95, 159, 209, 254, 384, 577
BlsI	GCNGC	7 cut(s)	37, 96, 160, 210, 255, 385, 578
BmcAI	AGTACT	1 cut(s)	488
Bme1390I	CCNGG	1 cut(s)	167
Bme18I	GGWCC	3 cut(s)	174, 466, 763
BmgT120I	GGNCC	3 cut(s)	174, 466, 763
BmiI	GGNNCC	6 cut(s)	111, 175, 246, 335, 575, 765
BmrFI	CCNGG	1 cut(s)	167
BmrI	ACTGGG	1 cut(s)	818
BmsI	GCATC	1 cut(s)	106
BmuI	ACTGGG	1 cut(s)	818
BplI	GAGNNNNNCTC	2 cut(s)	10, 42
Bpu10I	CCTNAGC	1 cut(s)	657
Bpu14I	TTCGAA	1 cut(s)	398
BpuMI	CCSGG	1 cut(s)	167
BsaAI	YACGTR	2 cut(s)	121, 544
BsaJI	CCNNGG	1 cut(s)	248
BsaWI	WCCGGW	1 cut(s)	100
BsaXI	ACNNNNNCTCC	2 cut(s)	101, 131
Bse118I	RCCGGY	1 cut(s)	31
Bse1I	ACTGG	4 cut(s)	234, 335, 484, 824
BseAI	TCCGGA	1 cut(s)	100
BseDI	CCNNGG	1 cut(s)	248
BseGI	GGATG	4 cut(s)	97, 431, 480, 621
BseMII	CTCAG	6 cut(s)	104, 128, 370, 422, 446, 648
BseNI	ACTGG	4 cut(s)	234, 335, 484, 824
BseRI	GAGGAG	5 cut(s)	59, 140, 237, 311, 674
BseX3I	CGGCCG	2 cut(s)	29, 251
BseXI	GCAGC	4 cut(s)	22, 106, 170, 195
BseYI	CCCAGC	1 cut(s)	421
BsgI	GTGCAG	1 cut(s)	305
Bsh1236I	CGCG	1 cut(s)	78
Bsh1285I	CGRYCG	4 cut(s)	32, 171, 240, 254
BshFI	GGCC	5 cut(s)	31, 50, 86, 253, 386
BsiEI	CGRYCG	4 cut(s)	32, 171, 240, 254
BsiHKAI	GWGCWC	1 cut(s)	357
BsiSI	CCGG	3 cut(s)	32, 101, 167
BslFI	GGGAC	2 cut(s)	187, 622
BsmFI	GGGAC	2 cut(s)	187, 622
BsmI	GAATGC	2 cut(s)	161, 686
BsnI	GGCC	5 cut(s)	31, 50, 86, 253, 386
Bsp119I	TTCGAA	1 cut(s)	398
Bsp1286I	GDGCHC	1 cut(s)	357
Bsp13I	TCCGGA	1 cut(s)	100
Bsp1407I	TGTACA	1 cut(s)	594
Bsp143I	GATC	2 cut(s)	184, 333
BspACI	CCGC	6 cut(s)	107, 236, 254, 383, 535, 577
BspANI	GGCC	5 cut(s)	31, 50, 86, 253, 386
BspCNI	CTCAG	6 cut(s)	103, 127, 369, 421, 445, 649
BspEI	TCCGGA	1 cut(s)	100
BspFNI	CGCG	1 cut(s)	78
BspLI	GGNNCC	6 cut(s)	111, 175, 246, 335, 575, 765
BspPI	GGATC	3 cut(s)	192, 328, 341
BspT104I	TTCGAA	1 cut(s)	398
BsrBI	CCGCTC	2 cut(s)	383, 535
BsrFI	RCCGGY	1 cut(s)	31
BsrGI	TGTACA	1 cut(s)	594
BsrI	ACTGG	4 cut(s)	234, 335, 484, 824
BssAI	RCCGGY	1 cut(s)	31
BssECI	CCNNGG	1 cut(s)	248
BssMI	GATC	2 cut(s)	184, 333
Bst4CI	ACNGT	3 cut(s)	491, 549, 590
Bst6I	CTCTTC	4 cut(s)	288, 516, 568, 728
BstAUI	TGTACA	1 cut(s)	594
BstBAI	YACGTR	2 cut(s)	121, 544
BstBI	TTCGAA	1 cut(s)	398
BstC8I	GCNNGC	3 cut(s)	33, 445, 581
BstDEI	CTNAG	7 cut(s)	90, 114, 356, 408, 432, 657, 723
BstF5I	GGATG	4 cut(s)	97, 431, 480, 621
BstFNI	CGCG	1 cut(s)	78
BstHHI	GCGC	1 cut(s)	78
BstKTI	GATC	2 cut(s)	187, 336
BstMBI	GATC	2 cut(s)	184, 333
BstMCI	CGRYCG	4 cut(s)	32, 171, 240, 254
BstMWI	GCNNNNNNNGC	3 cut(s)	32, 208, 242
BstSCI	CCNGG	1 cut(s)	165
BstSNI	TACGTA	1 cut(s)	544
BstUI	CGCG	1 cut(s)	78
BstV1I	GCAGC	4 cut(s)	22, 106, 170, 195
BstX2I	RGATCY	1 cut(s)	333
BstYI	RGATCY	1 cut(s)	333
BstZI	CGGCCG	2 cut(s)	29, 251
BsuRI	GGCC	5 cut(s)	31, 50, 86, 253, 386
BtgZI	GCGATG	1 cut(s)	183
BtsCI	GGATG	4 cut(s)	97, 431, 480, 621
BtsIMutI	CAGTG	3 cut(s)	227, 586, 632
Cac8I	GCNNGC	3 cut(s)	33, 445, 581
CfoI	GCGC	1 cut(s)	78
Cfr10I	RCCGGY	1 cut(s)	31
Cfr13I	GGNCC	3 cut(s)	174, 466, 763
Csp6I	GTAC	7 cut(s)	118, 215, 429, 487, 541, 545, 595
CviAII	CATG	2 cut(s)	612, 691
CviQI	GTAC	7 cut(s)	118, 215, 429, 487, 541, 545, 595
DdeI	CTNAG	7 cut(s)	90, 114, 356, 408, 432, 657, 723
DpnI	GATC	2 cut(s)	186, 335
DpnII	GATC	2 cut(s)	184, 333
EaeI	YGGCCR	3 cut(s)	29, 251, 384
EagI	CGGCCG	2 cut(s)	29, 251
Eam1104I	CTCTTC	4 cut(s)	288, 516, 568, 728
EarI	CTCTTC	4 cut(s)	288, 516, 568, 728
EciI	GGCGGA	1 cut(s)	122
Ecl136II	GAGCTC	1 cut(s)	355
EclXI	CGGCCG	2 cut(s)	29, 251
Eco105I	TACGTA	1 cut(s)	544
Eco147I	AGGCCT	1 cut(s)	86
Eco24I	GRGCYC	1 cut(s)	357
Eco32I	GATATC	1 cut(s)	558
Eco47I	GGWCC	3 cut(s)	174, 466, 763
Eco52I	CGGCCG	2 cut(s)	29, 251
Eco53kI	GAGCTC	1 cut(s)	355
EcoICRI	GAGCTC	1 cut(s)	355
EcoO109I	RGGNCCY	2 cut(s)	466, 763
EcoRI	GAATTC	1 cut(s)	370
EcoRV	GATATC	1 cut(s)	558
EcoT38I	GRGCYC	1 cut(s)	357
FaeI	CATG	2 cut(s)	615, 694
FalI	AAGNNNNNCTT	2 cut(s)	431, 463
FaqI	GGGAC	2 cut(s)	187, 622
FatI	CATG	2 cut(s)	611, 690
FauI	CCCGC	1 cut(s)	528
Fnu4HI	GCNGC	7 cut(s)	36, 95, 159, 209, 254, 384, 577
FokI	GGATG	4 cut(s)	84, 438, 487, 628
FriOI	GRGCYC	1 cut(s)	357
Fsp4HI	GCNGC	7 cut(s)	36, 95, 159, 209, 254, 384, 577
GlaI	GCGC	1 cut(s)	77
GluI	GCNGC	7 cut(s)	36, 95, 159, 209, 254, 384, 577
GsaI	CCCAGC	1 cut(s)	425
HaeIII	GGCC	5 cut(s)	31, 50, 86, 253, 386
HapII	CCGG	3 cut(s)	32, 101, 167
HhaI	GCGC	1 cut(s)	78
Hin1II	CATG	2 cut(s)	615, 694
Hin6I	GCGC	1 cut(s)	76
HinP1I	GCGC	1 cut(s)	76
HinfI	GANTC	1 cut(s)	194
HpaII	CCGG	3 cut(s)	32, 101, 167
Hpy166II	GTNNAC	1 cut(s)	541
Hpy188I	TCNGA	6 cut(s)	225, 359, 376, 411, 435, 513
Hpy188III	TCNNGA	4 cut(s)	101, 143, 172, 776
Hpy8I	GTNNAC	1 cut(s)	541
Hpy99I	CGWCG	2 cut(s)	208, 870
HpyAV	CCTTC	9 cut(s)	149, 267, 356, 433, 454, 673, 697, 742, 853
HpyCH4III	ACNGT	3 cut(s)	491, 549, 590
HpyCH4IV	ACGT	2 cut(s)	120, 543
HpyCH4V	TGCA	2 cut(s)	38, 286
HpyF10VI	GCNNNNNNNGC	3 cut(s)	32, 208, 242
HpyF3I	CTNAG	7 cut(s)	90, 114, 356, 408, 432, 657, 723
HpySE526I	ACGT	2 cut(s)	120, 543
Hsp92II	CATG	2 cut(s)	615, 694
HspAI	GCGC	1 cut(s)	76
Kpn2I	TCCGGA	1 cut(s)	100
KroI	GCCGGC	1 cut(s)	31
KroNI	GCCGGC	1 cut(s)	33
Kzo9I	GATC	2 cut(s)	184, 333
LmnI	GCTCC	4 cut(s)	109, 250, 352, 573
Lsp1109I	GCAGC	4 cut(s)	22, 106, 170, 195
LweI	GCATC	1 cut(s)	106
MaeII	ACGT	2 cut(s)	120, 543
MalI	GATC	2 cut(s)	186, 335
MbiI	CCGCTC	2 cut(s)	383, 535
MboI	GATC	2 cut(s)	184, 333
MboII	GAAGA	9 cut(s)	305, 334, 526, 533, 555, 739, 742, 745, 868
MflI	RGATCY	1 cut(s)	333
MhlI	GDGCHC	1 cut(s)	357
MluCI	AATT	4 cut(s)	219, 370, 479, 598
MlyI	GAGTC	1 cut(s)	188
MmeI	TCCRAC	2 cut(s)	171, 248
MroI	TCCGGA	1 cut(s)	100
MroNI	GCCGGC	1 cut(s)	31
MseI	TTAA	1 cut(s)	81
MslI	CAYNNNNRTG	1 cut(s)	347
MspI	CCGG	3 cut(s)	32, 101, 167
MspR9I	CCNGG	1 cut(s)	167
Mva1269I	GAATGC	2 cut(s)	161, 686
MvnI	CGCG	1 cut(s)	78
MwoI	GCNNNNNNNGC	3 cut(s)	32, 208, 242
NaeI	GCCGGC	1 cut(s)	33
NciI	CCSGG	1 cut(s)	167
NdeII	GATC	2 cut(s)	184, 333
NgoMIV	GCCGGC	1 cut(s)	31
NlaIII	CATG	2 cut(s)	615, 694
NlaIV	GGNNCC	6 cut(s)	111, 175, 246, 335, 575, 765
NmeAIII	GCCGAG	2 cut(s)	7, 229
NspV	TTCGAA	1 cut(s)	398
PceI	AGGCCT	1 cut(s)	86
PcsI	WCGNNNNNNNCGW	2 cut(s)	75, 891
PctI	GAATGC	2 cut(s)	161, 686
PdiI	GCCGGC	1 cut(s)	33
PkrI	GCNGC	7 cut(s)	37, 96, 160, 210, 255, 385, 578
PleI	GAGTC	1 cut(s)	188
PpsI	GAGTC	1 cut(s)	188
Ppu21I	YACGTR	2 cut(s)	121, 544
PpuMI	RGGWCCY	2 cut(s)	466, 763
PsiI	TTATAA	1 cut(s)	813
Psp124BI	GAGCTC	1 cut(s)	357
Psp5II	RGGWCCY	2 cut(s)	466, 763
PspFI	CCCAGC	1 cut(s)	421
PspN4I	GGNNCC	6 cut(s)	111, 175, 246, 335, 575, 765
PspPI	GGNCC	3 cut(s)	174, 466, 763
PspPPI	RGGWCCY	2 cut(s)	466, 763
PsuI	RGATCY	1 cut(s)	333
RsaI	GTAC	7 cut(s)	119, 216, 430, 488, 542, 546, 596
RsaNI	GTAC	7 cut(s)	118, 215, 429, 487, 541, 545, 595
RseI	CAYNNNNRTG	1 cut(s)	347
SacI	GAGCTC	1 cut(s)	357
SaqAI	TTAA	1 cut(s)	81
SatI	GCNGC	7 cut(s)	36, 95, 159, 209, 254, 384, 577
Sau3AI	GATC	2 cut(s)	184, 333
Sau96I	GGNCC	3 cut(s)	174, 466, 763
ScaI	AGTACT	1 cut(s)	488
SchI	GAGTC	1 cut(s)	188
ScrFI	CCNGG	1 cut(s)	167
SduI	GDGCHC	1 cut(s)	357
SfaNI	GCATC	1 cut(s)	106
SfuI	TTCGAA	1 cut(s)	398
SinI	GGWCC	3 cut(s)	174, 466, 763
SmiMI	CAYNNNNRTG	1 cut(s)	347
SnaBI	TACGTA	1 cut(s)	544
Sse9I	AATT	4 cut(s)	219, 370, 479, 598
SseBI	AGGCCT	1 cut(s)	86
SsiI	CCGC	6 cut(s)	107, 236, 254, 383, 535, 577
SstI	GAGCTC	1 cut(s)	357
StuI	AGGCCT	1 cut(s)	86
StyD4I	CCNGG	1 cut(s)	165
TaaI	ACNGT	3 cut(s)	491, 549, 590
TaiI	ACGT	2 cut(s)	123, 546
TaqI	TCGA	2 cut(s)	398, 602
TaqII	GACCGA	1 cut(s)	191
TasI	AATT	4 cut(s)	219, 370, 479, 598
TatI	WGTACW	4 cut(s)	214, 428, 486, 594
TauI	GCSGC	3 cut(s)	256, 386, 579
Tru1I	TTAA	1 cut(s)	81
Tru9I	TTAA	1 cut(s)	81
TscAI	CASTG	3 cut(s)	234, 593, 639
TseI	GCWGC	4 cut(s)	35, 94, 158, 208
TspDTI	ATGAA	7 cut(s)	326, 335, 473, 491, 632, 653, 679
TspGWI	ACGGA	2 cut(s)	56, 900
TspRI	CASTG	3 cut(s)	234, 593, 639
VpaK11BI	GGWCC	3 cut(s)	174, 466, 763
XapI	RAATTY	2 cut(s)	370, 479
ZrmI	AGTACT	1 cut(s)	488

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.