Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004924.1

Orthogroup ID

OG0000661

Physical Location & Seq

Genomic Coordinates Forward (+)

102808 .. 103734

Gene Structure 927 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004924.1_g000023.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 927 bp

atgcagagaagggcgttgagggaactagaggttgaaaccgccgttcagccactgcgaaagcggcacaagcgccgacctgccgagtacttggagaagccccggagcttagagggtctatggaaggctgcctttcctgttgggacaccgaggtctcttttggactcgccactctaccattctttcaagtgggatttctcgaatcttgaaggagcactcgaagaagggggaaagctgtacaagaagagcaacacagtctatctattcggctccacggaggaggccatggttagaaaagaagtggttgctttgatccctgtggttgtggccattgtttcggcttctccgccttcaaatgagcttggactcgtagagagtaagggcgaagtggaaaagagaatattgatgaagagattgaagatggaatgggctccatatgttcgtttagacaagagagtagacaacgaaggtcctgaaatctttgtcttgagctgcacgcaaagaagggctgctctcaaacacaaaaatgtcaagggaaacggtgatctggtgaagtttgaatacgccgtgccttatttagatccggcggggcaagtaatgtgtcatgaagttcatgttcatgaggaggaggaggaggaggagtactttagtgctaatgatgatgagctggaggagttgtacttcagtggtgacgatgagaaccaggtgatagaagatggcgaaaagaatgtcaaggtggaagaagaggcaaagggagaaaatattgatcttggagttagggaaggcggccggagaagaagtgtggagaatataatgaagatgaggatttacaagttctatccggtacaaacaccggatactcctgacgtatctgagtttaagaatacatttgtaaacaggtactatggcactgctcatgagattctgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005730 GO:0006950 GO:0007088 GO:0007346 GO:0008150 GO:0009266 GO:0009408 GO:0009628 GO:0009893 GO:0010286 GO:0010369 GO:0010468 GO:0010564 GO:0010604 GO:0010628 GO:0019222 GO:0031974 GO:0031981 GO:0033043 GO:0033044 GO:0033045 GO:0033047 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044464 GO:0048518 GO:0048519 GO:0048523 GO:0048583 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051726 GO:0051783 GO:0051983 GO:0060255 GO:0060968 GO:0060969 GO:0065007 GO:0070013 GO:0080134 GO:0080135 GO:0098687 GO:1900034 GO:1901651

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

308

Amino Acids

35.47

Weight (kDa)

5.43

Isoelectric Point (pI)

61.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000661)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G10010
fragaria_vesca	FvH4_6g03222 FvH4_6g03560 FvH4_6g03561 FvH4_6g03563 FvH4_6g03590 FvH4_6g03590 FvH4_6g09260
malus_domestica	MD04G1220200.v1.1 MD12G1240700.v1.1 MD15G1083500.v1.1
prunus_persica	Prupe.1G436000_v2.0.a1 Prupe.6G174800_v2.0.a1 Prupe.6G339200_v2.0.a1
pyrus_communis	pycom08g08260 pycom15g07800 pycom15g07810
rosa_chinensis	RchiOBHm_Chr3g0451551 RchiOBHm_Chr3g0451591 RchiOBHm_Chr3g0451621 RchiOBHm_Chr3g0452131 RchiOBHm_Chr3g0459621
rosa_laevigata	RLG00000025074 RLG00000025077 RLG00000025626 RLG00000029505 RLG00000035382 RLG00000035384
rosa_multiflora	Rmu_co8173672.1_g000001 Rmu_sc0000240.1_g000011 Rmu_sc0000240.1_g000014 Rmu_sc0004924.1_g000012 Rmu_sc0004924.1_g000020 Rmu_sc0004924.1_g000023 Rmu_sc0004924.1_g000025 Rmu_sc0004924.1_g000034 Rmu_sc0004924.1_g000035 Rmu_sc0009360.1_g000006 Rmu_sc0009360.1_g000008 Rmu_sc0009360.1_g000014 Rmu_sc0009360.1_g000047 Rmu_sc0011887.1_g000001 Rmu_sc0015119.1_g000001 Rmu_sc0023706.1_g000002
rosa_roxburghii	Rroxscaffold_164G00436050 Rroxscaffold_164G00436390 Rroxscaffold_164G00436450 Rroxscaffold_164G00436460 Rroxscaffold_4G00317080 Rroxscaffold_4G00317090 Rroxscaffold_6G00420140 Rroxscaffold_6G00428920
rosa_rugosa	Rorug02G0634200 Rorug02G0634500 Rorug02G0634700 Rorug02G0635400 Rorug02G0638500 Rorug03G0036600 Rorug03G0036700
rosa_samantha	Rh1BG103700 Rh1BG103800 Rh3AG040400 Rh3BG037900 Rh3BG038200 Rh3BG041900 Rh3BG097900 Rh3CG036600 Rh3CG040300 Rh3DG037300 Rh3DG037500 Rh3DG041200 Rh3DG099300
rosa_wichuraiana	Rw0G013830 Rw0G017580 Rw0G017600 Rw3G003070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	148
Acc36I	ACCTGC	1 cut(s)	85
AccI	GTMKAC	1 cut(s)	456
AciI	CCGC	5 cut(s)	39, 61, 344, 584, 783
AclWI	GGATC	2 cut(s)	304, 572
AcoI	YGGCCR	2 cut(s)	324, 784
AcuI	CTGAAG	1 cut(s)	664
AfaI	GTAC	6 cut(s)	86, 236, 641, 677, 843, 899
AgsI	TTSAA	6 cut(s)	35, 184, 206, 351, 415, 557
AjnI	CCWGG	1 cut(s)	699
AluBI	AGCT	5 cut(s)	105, 232, 358, 489, 664
AluI	AGCT	5 cut(s)	105, 232, 358, 489, 664
Alw21I	GWGCWC	1 cut(s)	214
Alw26I	GTCTC	1 cut(s)	156
AlwI	GGATC	2 cut(s)	304, 572
AlwNI	CAGNNNCTG	1 cut(s)	52
AoxI	GGCC	3 cut(s)	279, 324, 784
ApeKI	GCWGC	3 cut(s)	125, 489, 506
ArsI	GACNNNNNNTTYG	2 cut(s)	711, 743
AspLEI	GCGC	1 cut(s)	72
AspS9I	GGNCC	1 cut(s)	467
AsuC2I	CCSGG	1 cut(s)	100
AsuHPI	GGTGA	4 cut(s)	551, 559, 698, 715
AvaII	GGWCC	1 cut(s)	467
BalI	TGGCCA	1 cut(s)	326
BanII	GRGCYC	1 cut(s)	430
BarI	GAAGNNNNNNTAC	2 cut(s)	542, 574
Bbv12I	GWGCWC	1 cut(s)	214
BbvI	GCAGC	3 cut(s)	112, 476, 493
BccI	CCATC	2 cut(s)	412, 707
BceAI	ACGGC	2 cut(s)	26, 548
BciT130I	CCWGG	1 cut(s)	701
BciVI	GTATCC	1 cut(s)	847
BcnI	CCSGG	1 cut(s)	100
BcoDI	GTCTC	1 cut(s)	156
BfaI	CTAG	1 cut(s)	26
BfoI	RGCGCY	1 cut(s)	73
BfuAI	ACCTGC	1 cut(s)	85
BfuI	GTATCC	1 cut(s)	847
BisI	GCNGC	5 cut(s)	62, 126, 490, 507, 784
BlsI	GCNGC	5 cut(s)	63, 127, 491, 508, 785
BmcAI	AGTACT	2 cut(s)	86, 641
Bme1390I	CCNGG	2 cut(s)	100, 701
Bme18I	GGWCC	1 cut(s)	467
BmgT120I	GGNCC	1 cut(s)	467
BmiI	GGNNCC	2 cut(s)	268, 429
BmrFI	CCNGG	2 cut(s)	100, 701
BpmI	CTGGAG	1 cut(s)	686
BpuEI	CTTGAG	1 cut(s)	505
BpuMI	CCSGG	1 cut(s)	100
BsaI	GGTCTC	1 cut(s)	156
BsaJI	CCNNGG	4 cut(s)	98, 146, 270, 282
BsaWI	WCCGGW	2 cut(s)	838, 850
BsaXI	ACNNNNNCTCC	6 cut(s)	623, 653, 659, 689, 781, 811
BseBI	CCWGG	1 cut(s)	701
BseDI	CCNNGG	4 cut(s)	98, 146, 270, 282
BseMII	CTCAG	1 cut(s)	861
BseRI	GAGGAG	8 cut(s)	290, 635, 638, 641, 644, 647, 650, 683
BseX3I	CGGCCG	1 cut(s)	784
BseXI	GCAGC	3 cut(s)	112, 476, 493
BsgI	GTGCAG	1 cut(s)	475
Bsh1285I	CGRYCG	1 cut(s)	787
BshFI	GGCC	3 cut(s)	281, 326, 786
BsiEI	CGRYCG	1 cut(s)	787
BsiHKAI	GWGCWC	1 cut(s)	214
BsiSI	CCGG	5 cut(s)	100, 581, 787, 839, 851
BslFI	GGGAC	1 cut(s)	154
BsmAI	GTCTC	1 cut(s)	156
BsmFI	GGGAC	1 cut(s)	154
BsnI	GGCC	3 cut(s)	281, 326, 786
Bso31I	GGTCTC	1 cut(s)	156
Bsp1286I	GDGCHC	2 cut(s)	214, 430
Bsp1407I	TGTACA	1 cut(s)	234
Bsp143I	GATC	4 cut(s)	309, 541, 577, 763
Bsp19I	CCATGG	1 cut(s)	282
BspACI	CCGC	5 cut(s)	39, 61, 344, 584, 783
BspANI	GGCC	3 cut(s)	281, 326, 786
BspCNI	CTCAG	1 cut(s)	862
BspHI	TCATGA	3 cut(s)	601, 616, 913
BspLI	GGNNCC	2 cut(s)	268, 429
BspMI	ACCTGC	1 cut(s)	85
BspPI	GGATC	2 cut(s)	304, 572
BspQI	GCTCTTC	1 cut(s)	236
BspTNI	GGTCTC	1 cut(s)	156
BsrGI	TGTACA	1 cut(s)	234
BssECI	CCNNGG	4 cut(s)	98, 146, 270, 282
BssMI	GATC	4 cut(s)	309, 541, 577, 763
BssT1I	CCWWGG	1 cut(s)	282
Bst2UI	CCWGG	1 cut(s)	701
Bst4CI	ACNGT	2 cut(s)	253, 539
Bst6I	CTCTTC	3 cut(s)	236, 401, 735
BstAUI	TGTACA	1 cut(s)	234
BstC8I	GCNNGC	1 cut(s)	494
BstDEI	CTNAG	2 cut(s)	106, 870
BstDSI	CCRYGG	2 cut(s)	270, 282
BstH2I	RGCGCY	1 cut(s)	73
BstHHI	GCGC	1 cut(s)	72
BstKTI	GATC	4 cut(s)	312, 544, 580, 766
BstMAI	GTCTC	1 cut(s)	156
BstMBI	GATC	4 cut(s)	309, 541, 577, 763
BstMCI	CGRYCG	1 cut(s)	787
BstMWI	GCNNNNNNNGC	2 cut(s)	61, 67
BstNI	CCWGG	1 cut(s)	701
BstSCI	CCNGG	2 cut(s)	98, 699
BstV1I	GCAGC	3 cut(s)	112, 476, 493
BstX2I	RGATCY	1 cut(s)	577
BstYI	RGATCY	1 cut(s)	577
BstZI	CGGCCG	1 cut(s)	784
BsuI	GTATCC	1 cut(s)	847
BsuRI	GGCC	3 cut(s)	281, 326, 786
BtgI	CCRYGG	2 cut(s)	270, 282
BtsI	GCAGTG	2 cut(s)	50, 906
BtsIMutI	CAGTG	3 cut(s)	50, 688, 906
BveI	ACCTGC	1 cut(s)	85
Cac8I	GCNNGC	1 cut(s)	494
CaiI	CAGNNNCTG	1 cut(s)	52
CciI	TCATGA	3 cut(s)	601, 616, 913
CfoI	GCGC	1 cut(s)	72
Cfr13I	GGNCC	1 cut(s)	467
CsiI	ACCWGGT	1 cut(s)	699
Csp6I	GTAC	6 cut(s)	85, 235, 640, 676, 842, 898
CviAII	CATG	5 cut(s)	283, 602, 611, 617, 914
CviQI	GTAC	6 cut(s)	85, 235, 640, 676, 842, 898
DdeI	CTNAG	2 cut(s)	106, 870
DpnI	GATC	4 cut(s)	311, 543, 579, 765
DpnII	GATC	4 cut(s)	309, 541, 577, 763
DrdI	GACNNNNNNGTC	1 cut(s)	148
DseDI	GACNNNNNNGTC	1 cut(s)	148
EaeI	YGGCCR	2 cut(s)	324, 784
EagI	CGGCCG	1 cut(s)	784
Eam1104I	CTCTTC	3 cut(s)	236, 401, 735
EarI	CTCTTC	3 cut(s)	236, 401, 735
EciI	GGCGGA	1 cut(s)	333
EclXI	CGGCCG	1 cut(s)	784
Eco130I	CCWWGG	1 cut(s)	282
Eco24I	GRGCYC	1 cut(s)	430
Eco31I	GGTCTC	1 cut(s)	156
Eco47I	GGWCC	1 cut(s)	467
Eco52I	CGGCCG	1 cut(s)	784
Eco57I	CTGAAG	1 cut(s)	664
EcoO109I	RGGNCCY	1 cut(s)	467
EcoRII	CCWGG	1 cut(s)	699
EcoT14I	CCWWGG	1 cut(s)	282
EcoT38I	GRGCYC	1 cut(s)	430
ErhI	CCWWGG	1 cut(s)	282
FaeI	CATG	5 cut(s)	286, 605, 614, 620, 917
FalI	AAGNNNNNCTT	2 cut(s)	113, 145
FaqI	GGGAC	1 cut(s)	154
FatI	CATG	5 cut(s)	282, 601, 610, 616, 913
FauI	CCCGC	1 cut(s)	577
FauNDI	CATATG	1 cut(s)	433
FblI	GTMKAC	1 cut(s)	456
Fnu4HI	GCNGC	5 cut(s)	62, 126, 490, 507, 784
FriOI	GRGCYC	1 cut(s)	430
Fsp4HI	GCNGC	5 cut(s)	62, 126, 490, 507, 784
FspBI	CTAG	1 cut(s)	26
GlaI	GCGC	1 cut(s)	71
GluI	GCNGC	5 cut(s)	62, 126, 490, 507, 784
GsuI	CTGGAG	1 cut(s)	686
HaeII	RGCGCY	1 cut(s)	73
HaeIII	GGCC	3 cut(s)	281, 326, 786
HapII	CCGG	5 cut(s)	100, 581, 787, 839, 851
HhaI	GCGC	1 cut(s)	72
Hin1II	CATG	5 cut(s)	286, 605, 614, 620, 917
Hin6I	GCGC	1 cut(s)	70
HinP1I	GCGC	1 cut(s)	70
HinfI	GANTC	4 cut(s)	161, 199, 363, 919
HpaII	CCGG	5 cut(s)	100, 581, 787, 839, 851
HphI	GGTGA	4 cut(s)	551, 559, 698, 715
Hpy166II	GTNNAC	2 cut(s)	457, 892
Hpy188I	TCNGA	1 cut(s)	871
Hpy188III	TCNNGA	8 cut(s)	196, 203, 470, 484, 602, 617, 860, 914
Hpy8I	GTNNAC	2 cut(s)	457, 892
HpyAV	CCTTC	8 cut(s)	3, 115, 200, 215, 357, 458, 495, 773
HpyCH4III	ACNGT	2 cut(s)	253, 539
HpyCH4IV	ACGT	1 cut(s)	864
HpyCH4V	TGCA	2 cut(s)	4, 492
HpyF10VI	GCNNNNNNNGC	2 cut(s)	61, 67
HpyF3I	CTNAG	2 cut(s)	106, 870
HpySE526I	ACGT	1 cut(s)	864
Hsp92II	CATG	5 cut(s)	286, 605, 614, 620, 917
HspAI	GCGC	1 cut(s)	70
Kzo9I	GATC	4 cut(s)	309, 541, 577, 763
LguI	GCTCTTC	1 cut(s)	236
LmnI	GCTCC	4 cut(s)	102, 209, 272, 433
Lsp1109I	GCAGC	3 cut(s)	112, 476, 493
MabI	ACCWGGT	1 cut(s)	699
MaeI	CTAG	1 cut(s)	26
MaeII	ACGT	1 cut(s)	864
MaeIII	GTNAC	1 cut(s)	686
MalI	GATC	4 cut(s)	311, 543, 579, 765
MboI	GATC	4 cut(s)	309, 541, 577, 763
MboII	GAAGA	9 cut(s)	230, 253, 418, 427, 722, 749, 752, 804, 826
MflI	RGATCY	1 cut(s)	577
MhlI	GDGCHC	2 cut(s)	214, 430
MlsI	TGGCCA	1 cut(s)	326
MluNI	TGGCCA	1 cut(s)	326
MlyI	GAGTC	2 cut(s)	155, 357
Mox20I	TGGCCA	1 cut(s)	326
MscI	TGGCCA	1 cut(s)	326
MseI	TTAA	1 cut(s)	876
MslI	CAYNNNNRTG	2 cut(s)	522, 615
Msp20I	TGGCCA	1 cut(s)	326
MspI	CCGG	5 cut(s)	100, 581, 787, 839, 851
MspR9I	CCNGG	2 cut(s)	100, 701
MvaI	CCWGG	1 cut(s)	701
MwoI	GCNNNNNNNGC	2 cut(s)	61, 67
NciI	CCSGG	1 cut(s)	100
NcoI	CCATGG	1 cut(s)	282
NdeI	CATATG	1 cut(s)	433
NdeII	GATC	4 cut(s)	309, 541, 577, 763
NlaIII	CATG	5 cut(s)	286, 605, 614, 620, 917
NlaIV	GGNNCC	2 cut(s)	268, 429
NmeAIII	GCCGAG	1 cut(s)	106
NmuCI	GTSAC	1 cut(s)	686
PagI	TCATGA	3 cut(s)	601, 616, 913
PciSI	GCTCTTC	1 cut(s)	236
PfeI	GAWTC	2 cut(s)	199, 919
PkrI	GCNGC	5 cut(s)	63, 127, 491, 508, 785
PleI	GAGTC	2 cut(s)	155, 357
PpsI	GAGTC	2 cut(s)	155, 357
PpuMI	RGGWCCY	1 cut(s)	467
Psp5II	RGGWCCY	1 cut(s)	467
Psp6I	CCWGG	1 cut(s)	699
PspGI	CCWGG	1 cut(s)	699
PspN4I	GGNNCC	2 cut(s)	268, 429
PspPI	GGNCC	1 cut(s)	467
PspPPI	RGGWCCY	1 cut(s)	467
PstNI	CAGNNNCTG	1 cut(s)	52
PsuI	RGATCY	1 cut(s)	577
RsaI	GTAC	6 cut(s)	86, 236, 641, 677, 843, 899
RsaNI	GTAC	6 cut(s)	85, 235, 640, 676, 842, 898
RseI	CAYNNNNRTG	2 cut(s)	522, 615
SapI	GCTCTTC	1 cut(s)	236
SaqAI	TTAA	1 cut(s)	876
SatI	GCNGC	5 cut(s)	62, 126, 490, 507, 784
Sau3AI	GATC	4 cut(s)	309, 541, 577, 763
Sau96I	GGNCC	1 cut(s)	467
ScaI	AGTACT	2 cut(s)	86, 641
SchI	GAGTC	2 cut(s)	155, 357
ScrFI	CCNGG	2 cut(s)	100, 701
SduI	GDGCHC	2 cut(s)	214, 430
SexAI	ACCWGGT	1 cut(s)	699
SinI	GGWCC	1 cut(s)	467
SmiMI	CAYNNNNRTG	2 cut(s)	522, 615
SmlI	CTYRAG	1 cut(s)	484
SmoI	CTYRAG	1 cut(s)	484
SsiI	CCGC	5 cut(s)	39, 61, 344, 584, 783
SspI	AATATT	2 cut(s)	399, 760
SspMI	CTAG	1 cut(s)	26
StyD4I	CCNGG	2 cut(s)	98, 699
StyI	CCWWGG	1 cut(s)	282
TaaI	ACNGT	2 cut(s)	253, 539
TaiI	ACGT	1 cut(s)	867
TaqI	TCGA	2 cut(s)	197, 216
TatI	WGTACW	4 cut(s)	84, 234, 639, 675
TauI	GCSGC	2 cut(s)	64, 786
TfiI	GAWTC	2 cut(s)	199, 919
Tru1I	TTAA	1 cut(s)	876
Tru9I	TTAA	1 cut(s)	876
TscAI	CASTG	3 cut(s)	57, 688, 913
TseFI	GTSAC	1 cut(s)	686
TseI	GCWGC	3 cut(s)	125, 489, 506
Tsp45I	GTSAC	1 cut(s)	686
TspDTI	ATGAA	5 cut(s)	419, 599, 605, 618, 827
TspGWI	ACGGA	1 cut(s)	287
TspRI	CASTG	3 cut(s)	57, 688, 913
VpaK11BI	GGWCC	1 cut(s)	467
XmiI	GTMKAC	1 cut(s)	456
XspI	CTAG	1 cut(s)	26
ZrmI	AGTACT	2 cut(s)	86, 641

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.