Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0000661

Physical Location & Seq

Genomic Coordinates Forward (+)

41801418 .. 41801989

Gene Structure 572 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000025074

Sequence Viewer

CDS Protein Promoter (2k)

Length: 516 bp

ATGGACTGGATCCCCTACATCCCTCTGGAGCTCAGAGAAGGCTGGAATTCGGAAAGAGCGGCCAAGTCTGATTCGAACTTGCCTCAGATCTTCGTGCTGGGATGTACTCAGAGGAAGGCGAGCTTGAAGCAGATGAAGGAGGACCGCTGGATGAAGTTCCAGTACTGTGTGCCTTATATATTGAATCCGAAATACGAAGAAGAAAAGAAGCAGAATACTGTGGTGGAATTTTTCTTCCCACGGGACCTCAACTGCCACTGGGAGGATGAGGAGTTGAGTGAGGATAAGGAGGCATTCATGGAGTTTTTGAAGGAGGAAGTAAAGAACGCCAAGAAGAAGAAGAGGGAAGTGAGGAAGAAGAGAATGGAGGACCCAAAGTATCAGGAAGCTAAAACCTATTATGAGAATATGAGGCTTTACAAGATTTACCCAGGACCAACACCAAACACTCCTGTGATAGAGATGAAGTCTCATGATGTCAACTTCTACTACAGGTTTGCCCATGAGATTATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005730 GO:0006950 GO:0007088 GO:0007346 GO:0008150 GO:0009266 GO:0009408 GO:0009628 GO:0009893 GO:0010286 GO:0010369 GO:0010468 GO:0010564 GO:0010604 GO:0010628 GO:0019222 GO:0031974 GO:0031981 GO:0033043 GO:0033044 GO:0033045 GO:0033047 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044464 GO:0048518 GO:0048519 GO:0048523 GO:0048583 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051726 GO:0051783 GO:0051983 GO:0060255 GO:0060968 GO:0060969 GO:0065007 GO:0070013 GO:0080134 GO:0080135 GO:0098687 GO:1900034 GO:1901651

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

172

Amino Acids

20.93

Weight (kDa)

7.64

Isoelectric Point (pI)

48.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000661)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G10010
fragaria_vesca	FvH4_6g03222 FvH4_6g03560 FvH4_6g03561 FvH4_6g03563 FvH4_6g03590 FvH4_6g03590 FvH4_6g09260
malus_domestica	MD04G1220200.v1.1 MD12G1240700.v1.1 MD15G1083500.v1.1
prunus_persica	Prupe.1G436000_v2.0.a1 Prupe.6G174800_v2.0.a1 Prupe.6G339200_v2.0.a1
pyrus_communis	pycom08g08260 pycom15g07800 pycom15g07810
rosa_chinensis	RchiOBHm_Chr3g0451551 RchiOBHm_Chr3g0451591 RchiOBHm_Chr3g0451621 RchiOBHm_Chr3g0452131 RchiOBHm_Chr3g0459621
rosa_laevigata	RLG00000025074 RLG00000025077 RLG00000025626 RLG00000029505 RLG00000035382 RLG00000035384
rosa_multiflora	Rmu_co8173672.1_g000001 Rmu_sc0000240.1_g000011 Rmu_sc0000240.1_g000014 Rmu_sc0004924.1_g000012 Rmu_sc0004924.1_g000020 Rmu_sc0004924.1_g000023 Rmu_sc0004924.1_g000025 Rmu_sc0004924.1_g000034 Rmu_sc0004924.1_g000035 Rmu_sc0009360.1_g000006 Rmu_sc0009360.1_g000008 Rmu_sc0009360.1_g000014 Rmu_sc0009360.1_g000047 Rmu_sc0011887.1_g000001 Rmu_sc0015119.1_g000001 Rmu_sc0023706.1_g000002
rosa_roxburghii	Rroxscaffold_164G00436050 Rroxscaffold_164G00436390 Rroxscaffold_164G00436450 Rroxscaffold_164G00436460 Rroxscaffold_4G00317080 Rroxscaffold_4G00317090 Rroxscaffold_6G00420140 Rroxscaffold_6G00428920
rosa_rugosa	Rorug02G0634200 Rorug02G0634500 Rorug02G0634700 Rorug02G0635400 Rorug02G0638500 Rorug03G0036600 Rorug03G0036700
rosa_samantha	Rh1BG103700 Rh1BG103800 Rh3AG040400 Rh3BG037900 Rh3BG038200 Rh3BG041900 Rh3BG097900 Rh3CG036600 Rh3CG040300 Rh3DG037300 Rh3DG037500 Rh3DG041200 Rh3DG099300
rosa_wichuraiana	Rw0G013830 Rw0G017580 Rw0G017600 Rw3G003070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	59
AciI	CCGC	2 cut(s)	59, 145
AclWI	GGATC	2 cut(s)	4, 17
AcoI	YGGCCR	1 cut(s)	60
AcsI	RAATTY	2 cut(s)	46, 227
AfaI	GTAC	2 cut(s)	106, 164
AfiI	CCNNNNNNNGG	1 cut(s)	262
AgsI	TTSAA	3 cut(s)	127, 184, 310
AjnI	CCWGG	1 cut(s)	430
AleI	CACNNNNGTG	1 cut(s)	452
AluBI	AGCT	3 cut(s)	31, 123, 389
AluI	AGCT	3 cut(s)	31, 123, 389
Alw21I	GWGCWC	1 cut(s)	33
Alw26I	GTCTC	1 cut(s)	474
AlwI	GGATC	2 cut(s)	4, 17
AoxI	GGCC	1 cut(s)	60
ApoI	RAATTY	2 cut(s)	46, 227
AspS9I	GGNCC	4 cut(s)	142, 244, 370, 434
AsuII	TTCGAA	1 cut(s)	74
AvaII	GGWCC	4 cut(s)	142, 244, 370, 434
BamHI	GGATCC	1 cut(s)	9
BanII	GRGCYC	1 cut(s)	33
BarI	GAAGNNNNNNTAC	2 cut(s)	146, 178
Bbv12I	GWGCWC	1 cut(s)	33
BciT130I	CCWGG	1 cut(s)	432
BcoDI	GTCTC	1 cut(s)	474
BfmI	CTRYAG	1 cut(s)	490
BglII	AGATCT	1 cut(s)	87
BisI	GCNGC	1 cut(s)	60
BlsI	GCNGC	1 cut(s)	61
BmcAI	AGTACT	1 cut(s)	164
Bme1390I	CCNGG	1 cut(s)	432
Bme18I	GGWCC	4 cut(s)	142, 244, 370, 434
BmgT120I	GGNCC	4 cut(s)	142, 244, 370, 434
BmiI	GGNNCC	3 cut(s)	11, 245, 372
BmrFI	CCNGG	1 cut(s)	432
BmrI	ACTGGG	1 cut(s)	268
BmuI	ACTGGG	1 cut(s)	268
BpmI	CTGGAG	1 cut(s)	47
Bpu14I	TTCGAA	1 cut(s)	74
BsaJI	CCNNGG	2 cut(s)	239, 430
Bsc4I	CCNNNNNNNGG	1 cut(s)	262
Bse1I	ACTGG	3 cut(s)	11, 160, 263
BseBI	CCWGG	1 cut(s)	432
BseDI	CCNNGG	2 cut(s)	239, 430
BseGI	GGATG	4 cut(s)	18, 107, 156, 271
BseLI	CCNNNNNNNGG	1 cut(s)	262
BseMII	CTCAG	3 cut(s)	46, 98, 122
BseNI	ACTGG	3 cut(s)	11, 160, 263
BseRI	GAGGAG	1 cut(s)	284
BseYI	CCCAGC	1 cut(s)	97
BshFI	GGCC	1 cut(s)	62
BsiHKAI	GWGCWC	1 cut(s)	33
BslFI	GGGAC	1 cut(s)	257
BslI	CCNNNNNNNGG	1 cut(s)	262
BsmAI	GTCTC	1 cut(s)	474
BsmFI	GGGAC	1 cut(s)	257
BsmI	GAATGC	1 cut(s)	293
BsnI	GGCC	1 cut(s)	62
Bsp119I	TTCGAA	1 cut(s)	74
Bsp1286I	GDGCHC	1 cut(s)	33
Bsp143I	GATC	2 cut(s)	9, 87
BspACI	CCGC	2 cut(s)	59, 145
BspANI	GGCC	1 cut(s)	62
BspCNI	CTCAG	3 cut(s)	45, 97, 121
BspHI	TCATGA	1 cut(s)	472
BspLI	GGNNCC	3 cut(s)	11, 245, 372
BspPI	GGATC	2 cut(s)	4, 17
BspT104I	TTCGAA	1 cut(s)	74
BsrBI	CCGCTC	1 cut(s)	59
BsrI	ACTGG	3 cut(s)	11, 160, 263
BssECI	CCNNGG	2 cut(s)	239, 430
BssMI	GATC	2 cut(s)	9, 87
Bst2UI	CCWGG	1 cut(s)	432
Bst4CI	ACNGT	2 cut(s)	167, 220
Bst6I	CTCTTC	2 cut(s)	335, 353
BstBI	TTCGAA	1 cut(s)	74
BstC8I	GCNNGC	1 cut(s)	121
BstDEI	CTNAG	3 cut(s)	32, 84, 108
BstDSI	CCRYGG	1 cut(s)	239
BstF5I	GGATG	4 cut(s)	18, 107, 156, 271
BstKTI	GATC	2 cut(s)	12, 90
BstMAI	GTCTC	1 cut(s)	474
BstMBI	GATC	2 cut(s)	9, 87
BstNI	CCWGG	1 cut(s)	432
BstSCI	CCNGG	1 cut(s)	430
BstSFI	CTRYAG	1 cut(s)	490
BstX2I	RGATCY	2 cut(s)	9, 87
BstYI	RGATCY	2 cut(s)	9, 87
BsuRI	GGCC	1 cut(s)	62
BtgI	CCRYGG	1 cut(s)	239
BtsCI	GGATG	4 cut(s)	18, 107, 156, 271
BtsIMutI	CAGTG	1 cut(s)	256
Cac8I	GCNNGC	1 cut(s)	121
CciI	TCATGA	1 cut(s)	472
Cfr13I	GGNCC	4 cut(s)	142, 244, 370, 434
Csp6I	GTAC	2 cut(s)	105, 163
CviAII	CATG	3 cut(s)	298, 473, 503
CviJI	RGCY	6 cut(s)	31, 42, 62, 123, 389, 415
CviKI_1	RGCY	6 cut(s)	31, 42, 62, 123, 389, 415
CviQI	GTAC	2 cut(s)	105, 163
DdeI	CTNAG	3 cut(s)	32, 84, 108
DpnI	GATC	2 cut(s)	11, 89
DpnII	GATC	2 cut(s)	9, 87
EaeI	YGGCCR	1 cut(s)	60
Eam1104I	CTCTTC	2 cut(s)	335, 353
EarI	CTCTTC	2 cut(s)	335, 353
Ecl136II	GAGCTC	1 cut(s)	31
Eco24I	GRGCYC	1 cut(s)	33
Eco47I	GGWCC	4 cut(s)	142, 244, 370, 434
Eco53kI	GAGCTC	1 cut(s)	31
EcoICRI	GAGCTC	1 cut(s)	31
EcoO109I	RGGNCCY	2 cut(s)	244, 370
EcoRI	GAATTC	1 cut(s)	46
EcoRII	CCWGG	1 cut(s)	430
EcoT38I	GRGCYC	1 cut(s)	33
FaeI	CATG	3 cut(s)	301, 476, 506
FaiI	YATR	7 cut(s)	177, 179, 299, 402, 410, 474, 504
FalI	AAGNNNNNCTT	2 cut(s)	107, 139
FaqI	GGGAC	1 cut(s)	257
FatI	CATG	3 cut(s)	297, 472, 502
Fnu4HI	GCNGC	1 cut(s)	60
FokI	GGATG	4 cut(s)	5, 114, 163, 278
FriOI	GRGCYC	1 cut(s)	33
Fsp4HI	GCNGC	1 cut(s)	60
GluI	GCNGC	1 cut(s)	60
GsaI	CCCAGC	1 cut(s)	101
GsuI	CTGGAG	1 cut(s)	47
HaeIII	GGCC	1 cut(s)	62
Hin1II	CATG	3 cut(s)	301, 476, 506
HincII	GTYRAC	1 cut(s)	481
HindII	GTYRAC	1 cut(s)	481
HinfI	GANTC	2 cut(s)	71, 184
Hpy166II	GTNNAC	1 cut(s)	481
Hpy188I	TCNGA	6 cut(s)	35, 52, 70, 87, 111, 189
Hpy188III	TCNNGA	3 cut(s)	26, 383, 473
Hpy8I	GTNNAC	1 cut(s)	481
HpyAV	CCTTC	4 cut(s)	32, 109, 130, 304
HpyCH4III	ACNGT	2 cut(s)	167, 220
HpyF3I	CTNAG	3 cut(s)	32, 84, 108
Hsp92II	CATG	3 cut(s)	301, 476, 506
Kzo9I	GATC	2 cut(s)	9, 87
LmnI	GCTCC	1 cut(s)	28
MalI	GATC	2 cut(s)	11, 89
MbiI	CCGCTC	1 cut(s)	59
MboI	GATC	2 cut(s)	9, 87
MboII	GAAGA	9 cut(s)	82, 209, 212, 226, 346, 349, 352, 367, 370
MflI	RGATCY	2 cut(s)	9, 87
MhlI	GDGCHC	1 cut(s)	33
MluCI	AATT	2 cut(s)	46, 227
MslI	CAYNNNNRTG	1 cut(s)	452
MspA1I	CMGCKG	1 cut(s)	147
MspR9I	CCNGG	1 cut(s)	432
Mva1269I	GAATGC	1 cut(s)	293
MvaI	CCWGG	1 cut(s)	432
NdeII	GATC	2 cut(s)	9, 87
NlaIII	CATG	3 cut(s)	301, 476, 506
NlaIV	GGNNCC	3 cut(s)	11, 245, 372
NspV	TTCGAA	1 cut(s)	74
OliI	CACNNNNGTG	1 cut(s)	452
PagI	TCATGA	1 cut(s)	472
PctI	GAATGC	1 cut(s)	293
PfeI	GAWTC	2 cut(s)	71, 184
PkrI	GCNGC	1 cut(s)	61
PpuMI	RGGWCCY	2 cut(s)	244, 370
Psp124BI	GAGCTC	1 cut(s)	33
Psp5II	RGGWCCY	2 cut(s)	244, 370
Psp6I	CCWGG	1 cut(s)	430
PspFI	CCCAGC	1 cut(s)	97
PspGI	CCWGG	1 cut(s)	430
PspN4I	GGNNCC	3 cut(s)	11, 245, 372
PspPI	GGNCC	4 cut(s)	142, 244, 370, 434
PspPPI	RGGWCCY	2 cut(s)	244, 370
PsuI	RGATCY	2 cut(s)	9, 87
RsaI	GTAC	2 cut(s)	106, 164
RsaNI	GTAC	2 cut(s)	105, 163
RseI	CAYNNNNRTG	1 cut(s)	452
SacI	GAGCTC	1 cut(s)	33
SatI	GCNGC	1 cut(s)	60
Sau3AI	GATC	2 cut(s)	9, 87
Sau96I	GGNCC	4 cut(s)	142, 244, 370, 434
ScaI	AGTACT	1 cut(s)	164
ScrFI	CCNGG	1 cut(s)	432
SduI	GDGCHC	1 cut(s)	33
SetI	ASST	6 cut(s)	33, 125, 249, 391, 398, 497
SfcI	CTRYAG	1 cut(s)	490
SfuI	TTCGAA	1 cut(s)	74
SinI	GGWCC	4 cut(s)	142, 244, 370, 434
SmiMI	CAYNNNNRTG	1 cut(s)	452
Sse9I	AATT	2 cut(s)	46, 227
SsiI	CCGC	2 cut(s)	59, 145
SstI	GAGCTC	1 cut(s)	33
StyD4I	CCNGG	1 cut(s)	430
TaaI	ACNGT	2 cut(s)	167, 220
TaqI	TCGA	1 cut(s)	74
TasI	AATT	2 cut(s)	46, 227
TatI	WGTACW	2 cut(s)	104, 162
TauI	GCSGC	1 cut(s)	62
TfiI	GAWTC	2 cut(s)	71, 184
TscAI	CASTG	1 cut(s)	263
TspDTI	ATGAA	4 cut(s)	149, 167, 286, 479
TspRI	CASTG	1 cut(s)	263
VpaK11BI	GGWCC	4 cut(s)	142, 244, 370, 434
XapI	RAATTY	2 cut(s)	46, 227
ZrmI	AGTACT	1 cut(s)	164

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.