Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000164

Orthogroup ID

OG0000661

Physical Location & Seq

Genomic Coordinates Forward (+)

309273 .. 310196

Gene Structure 924 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_164G00436390.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 924 bp

ATGAAGAGAAAGGCTTTGATGGAACTAGATGTTGAAATCGCAGCTCAGCCACCGCGAAAACGGTTCAAGCCCCGACCCACCGAGTACTTGGAGGAGCCCCGGAGCCTGGAGAGTCTATGGAAGGCTGTGTTTCCCGCTGGGACACCGAGGTCTGTTTTGGACTCACCACTATACCATTCTTTCAAGTGGGATTTCTCGAATCTTGAAGGAGCACTCGAAGAAGGGGGAAAGCTGTACAAGAAGAGCAACAGAGTCTATCTATTTGGCTCCACGGAGGAAGCCATGGTTAAGAGAGAAGTGGTTGCTTTGATCCCTGTGGTGGCGGCCGTTGTTTCGGCTTCTGCGCCGTCCAATGAGCTTGGACTTGTTTTAAGTGAGGGAAAAGTGGAAGAGATAATTCCGATGAAGAGATTGAAGATAGACTGGGCTCTGTATGTTCCTTTGGACAAGAGAGTAGACAAAGAAGGGCCTGAAATCTTTGTCTTGAGCTGCAAGCAAAGAAGGGCCGCTCTCAAACACAAAAATGTCAAGGGAAACAGTGATCTATTGAAGTTTGAATACGCCGTGCCTTATTTGGATCCAGCGGTACAAGTAATGTGTCATGAAGTTCATGTTCAGGAGGAGGAGGAGGAGTACTTTAGTGCTAATGATGATGAGCTGGAGGAGTTGTACTTCAGTGGTGACGATGAGAACCAGGTGATAGAAGAAGATGACGAAAAGAATGTGAAGGTGGAAGAAGAAGCAAAGGGAGAAAATATTGATCTTGGAGTTAGGGAAGGCGGCCGGAGAAGAAGTGTGGAGAATATAATGAAGATGAGGATTTACAAGTTCTATCCGGTACAAACACCGGATACTCCTGACATATCTGAGTTTCAGAATGCATTTGTCAACAGGTACTATGGCACTGCTCATGAGATTCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005730 GO:0006950 GO:0007088 GO:0007346 GO:0008150 GO:0009266 GO:0009408 GO:0009628 GO:0009893 GO:0010286 GO:0010369 GO:0010468 GO:0010564 GO:0010604 GO:0010628 GO:0019222 GO:0031974 GO:0031981 GO:0033043 GO:0033044 GO:0033045 GO:0033047 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044464 GO:0048518 GO:0048519 GO:0048523 GO:0048583 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051726 GO:0051783 GO:0051983 GO:0060255 GO:0060968 GO:0060969 GO:0065007 GO:0070013 GO:0080134 GO:0080135 GO:0098687 GO:1900034 GO:1901651

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

307

Amino Acids

35.24

Weight (kDa)

5.05

Isoelectric Point (pI)

57.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000661)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G10010
fragaria_vesca	FvH4_6g03222 FvH4_6g03560 FvH4_6g03561 FvH4_6g03563 FvH4_6g03590 FvH4_6g03590 FvH4_6g09260
malus_domestica	MD04G1220200.v1.1 MD12G1240700.v1.1 MD15G1083500.v1.1
prunus_persica	Prupe.1G436000_v2.0.a1 Prupe.6G174800_v2.0.a1 Prupe.6G339200_v2.0.a1
pyrus_communis	pycom08g08260 pycom15g07800 pycom15g07810
rosa_chinensis	RchiOBHm_Chr3g0451551 RchiOBHm_Chr3g0451591 RchiOBHm_Chr3g0451621 RchiOBHm_Chr3g0452131 RchiOBHm_Chr3g0459621
rosa_laevigata	RLG00000025074 RLG00000025077 RLG00000025626 RLG00000029505 RLG00000035382 RLG00000035384
rosa_multiflora	Rmu_co8173672.1_g000001 Rmu_sc0000240.1_g000011 Rmu_sc0000240.1_g000014 Rmu_sc0004924.1_g000012 Rmu_sc0004924.1_g000020 Rmu_sc0004924.1_g000023 Rmu_sc0004924.1_g000025 Rmu_sc0004924.1_g000034 Rmu_sc0004924.1_g000035 Rmu_sc0009360.1_g000006 Rmu_sc0009360.1_g000008 Rmu_sc0009360.1_g000014 Rmu_sc0009360.1_g000047 Rmu_sc0011887.1_g000001 Rmu_sc0015119.1_g000001 Rmu_sc0023706.1_g000002
rosa_roxburghii	Rroxscaffold_164G00436050 Rroxscaffold_164G00436390 Rroxscaffold_164G00436450 Rroxscaffold_164G00436460 Rroxscaffold_4G00317080 Rroxscaffold_4G00317090 Rroxscaffold_6G00420140 Rroxscaffold_6G00428920
rosa_rugosa	Rorug02G0634200 Rorug02G0634500 Rorug02G0634700 Rorug02G0635400 Rorug02G0638500 Rorug03G0036600 Rorug03G0036700
rosa_samantha	Rh1BG103700 Rh1BG103800 Rh3AG040400 Rh3BG037900 Rh3BG038200 Rh3BG041900 Rh3BG097900 Rh3CG036600 Rh3CG040300 Rh3DG037300 Rh3DG037500 Rh3DG041200 Rh3DG099300
rosa_wichuraiana	Rw0G013830 Rw0G017580 Rw0G017600 Rw3G003070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	148
AccBSI	CCGCTC	1 cut(s)	509
AccI	GTMKAC	1 cut(s)	456
AccII	CGCG	1 cut(s)	55
AciI	CCGC	6 cut(s)	53, 135, 323, 507, 584, 780
AclWI	GGATC	3 cut(s)	304, 572, 585
AcoI	YGGCCR	2 cut(s)	324, 781
AcuI	CTGAAG	1 cut(s)	658
AfaI	GTAC	7 cut(s)	86, 236, 588, 635, 671, 840, 896
AfiI	CCNNNNNNNGG	2 cut(s)	106, 319
AgsI	TTSAA	7 cut(s)	35, 67, 184, 206, 415, 550, 557
AjnI	CCWGG	2 cut(s)	105, 693
AluBI	AGCT	5 cut(s)	44, 232, 358, 489, 658
AluI	AGCT	5 cut(s)	44, 232, 358, 489, 658
Alw21I	GWGCWC	1 cut(s)	214
AlwI	GGATC	3 cut(s)	304, 572, 585
AoxI	GGCC	4 cut(s)	324, 467, 504, 781
ApeKI	GCWGC	2 cut(s)	41, 489
AspLEI	GCGC	1 cut(s)	346
AspS9I	GGNCC	2 cut(s)	467, 504
AsuC2I	CCSGG	1 cut(s)	100
AsuHPI	GGTGA	3 cut(s)	156, 692, 709
BamHI	GGATCC	1 cut(s)	577
BanII	GRGCYC	2 cut(s)	99, 430
BarI	GAAGNNNNNNTAC	2 cut(s)	542, 574
Bbv12I	GWGCWC	1 cut(s)	214
BbvI	GCAGC	2 cut(s)	53, 476
BccI	CCATC	1 cut(s)	13
BceAI	ACGGC	3 cut(s)	311, 331, 548
BciT130I	CCWGG	2 cut(s)	107, 695
BciVI	GTATCC	1 cut(s)	844
BcnI	CCSGG	1 cut(s)	100
BfaI	CTAG	1 cut(s)	26
BfuI	GTATCC	1 cut(s)	844
BisI	GCNGC	5 cut(s)	42, 324, 490, 507, 781
BlpI	GCTNAGC	1 cut(s)	45
BlsI	GCNGC	5 cut(s)	43, 325, 491, 508, 782
BmcAI	AGTACT	2 cut(s)	86, 635
Bme1390I	CCNGG	3 cut(s)	100, 107, 695
BmgT120I	GGNCC	2 cut(s)	467, 504
BmiI	GGNNCC	4 cut(s)	96, 104, 268, 579
BmrFI	CCNGG	3 cut(s)	100, 107, 695
BmrI	ACTGGG	1 cut(s)	433
BmuI	ACTGGG	1 cut(s)	433
BpmI	CTGGAG	2 cut(s)	128, 680
Bpu1102I	GCTNAGC	1 cut(s)	45
BpuEI	CTTGAG	1 cut(s)	505
BpuMI	CCSGG	1 cut(s)	100
BsaJI	CCNNGG	4 cut(s)	98, 146, 270, 282
BsaWI	WCCGGW	2 cut(s)	835, 847
BsaXI	ACNNNNNCTCC	6 cut(s)	617, 647, 653, 683, 778, 808
Bsc4I	CCNNNNNNNGG	2 cut(s)	106, 319
Bse1I	ACTGG	1 cut(s)	428
BseBI	CCWGG	2 cut(s)	107, 695
BseDI	CCNNGG	4 cut(s)	98, 146, 270, 282
BseLI	CCNNNNNNNGG	2 cut(s)	106, 319
BseMII	CTCAG	2 cut(s)	59, 858
BseNI	ACTGG	1 cut(s)	428
BseRI	GAGGAG	6 cut(s)	107, 635, 638, 641, 644, 677
BseX3I	CGGCCG	2 cut(s)	324, 781
BseXI	GCAGC	2 cut(s)	53, 476
BseYI	CCCAGC	1 cut(s)	137
Bsh1236I	CGCG	1 cut(s)	55
Bsh1285I	CGRYCG	2 cut(s)	327, 784
BshFI	GGCC	4 cut(s)	326, 469, 506, 783
BsiEI	CGRYCG	2 cut(s)	327, 784
BsiHKAI	GWGCWC	1 cut(s)	214
BsiSI	CCGG	4 cut(s)	100, 784, 836, 848
BslFI	GGGAC	1 cut(s)	154
BslI	CCNNNNNNNGG	2 cut(s)	106, 319
BsmFI	GGGAC	1 cut(s)	154
BsmI	GAATGC	1 cut(s)	883
BsnI	GGCC	4 cut(s)	326, 469, 506, 783
Bsp1286I	GDGCHC	3 cut(s)	99, 214, 430
Bsp1407I	TGTACA	1 cut(s)	234
Bsp143I	GATC	4 cut(s)	309, 541, 577, 760
Bsp1720I	GCTNAGC	1 cut(s)	45
Bsp19I	CCATGG	1 cut(s)	282
BspACI	CCGC	6 cut(s)	53, 135, 323, 507, 584, 780
BspANI	GGCC	4 cut(s)	326, 469, 506, 783
BspCNI	CTCAG	2 cut(s)	58, 859
BspFNI	CGCG	1 cut(s)	55
BspHI	TCATGA	2 cut(s)	601, 910
BspLI	GGNNCC	4 cut(s)	96, 104, 268, 579
BspPI	GGATC	3 cut(s)	304, 572, 585
BspQI	GCTCTTC	1 cut(s)	236
BsrBI	CCGCTC	1 cut(s)	509
BsrGI	TGTACA	1 cut(s)	234
BsrI	ACTGG	1 cut(s)	428
BssECI	CCNNGG	4 cut(s)	98, 146, 270, 282
BssMI	GATC	4 cut(s)	309, 541, 577, 760
BssT1I	CCWWGG	1 cut(s)	282
Bst2UI	CCWGG	2 cut(s)	107, 695
Bst4CI	ACNGT	2 cut(s)	63, 539
Bst6I	CTCTTC	3 cut(s)	236, 384, 401
BstAUI	TGTACA	1 cut(s)	234
BstC8I	GCNNGC	1 cut(s)	494
BstDEI	CTNAG	2 cut(s)	45, 867
BstDSI	CCRYGG	2 cut(s)	270, 282
BstFNI	CGCG	1 cut(s)	55
BstHHI	GCGC	1 cut(s)	346
BstKTI	GATC	4 cut(s)	312, 544, 580, 763
BstMBI	GATC	4 cut(s)	309, 541, 577, 760
BstMCI	CGRYCG	2 cut(s)	327, 784
BstNI	CCWGG	2 cut(s)	107, 695
BstSCI	CCNGG	3 cut(s)	98, 105, 693
BstUI	CGCG	1 cut(s)	55
BstV1I	GCAGC	2 cut(s)	53, 476
BstX2I	RGATCY	1 cut(s)	577
BstYI	RGATCY	1 cut(s)	577
BstZI	CGGCCG	2 cut(s)	324, 781
BsuI	GTATCC	1 cut(s)	844
BsuRI	GGCC	4 cut(s)	326, 469, 506, 783
BtgI	CCRYGG	2 cut(s)	270, 282
BtsI	GCAGTG	1 cut(s)	903
BtsIMutI	CAGTG	3 cut(s)	544, 682, 903
Cac8I	GCNNGC	1 cut(s)	494
CciI	TCATGA	2 cut(s)	601, 910
CfoI	GCGC	1 cut(s)	346
Cfr13I	GGNCC	2 cut(s)	467, 504
CsiI	ACCWGGT	1 cut(s)	693
Csp6I	GTAC	7 cut(s)	85, 235, 587, 634, 670, 839, 895
CviAII	CATG	4 cut(s)	283, 602, 611, 911
CviQI	GTAC	7 cut(s)	85, 235, 587, 634, 670, 839, 895
DdeI	CTNAG	2 cut(s)	45, 867
DpnI	GATC	4 cut(s)	311, 543, 579, 762
DpnII	GATC	4 cut(s)	309, 541, 577, 760
DrdI	GACNNNNNNGTC	1 cut(s)	148
DseDI	GACNNNNNNGTC	1 cut(s)	148
EaeI	YGGCCR	2 cut(s)	324, 781
EagI	CGGCCG	2 cut(s)	324, 781
Eam1104I	CTCTTC	3 cut(s)	236, 384, 401
EarI	CTCTTC	3 cut(s)	236, 384, 401
EclXI	CGGCCG	2 cut(s)	324, 781
Eco130I	CCWWGG	1 cut(s)	282
Eco24I	GRGCYC	2 cut(s)	99, 430
Eco52I	CGGCCG	2 cut(s)	324, 781
Eco57I	CTGAAG	1 cut(s)	658
EcoO109I	RGGNCCY	1 cut(s)	467
EcoRII	CCWGG	2 cut(s)	105, 693
EcoT14I	CCWWGG	1 cut(s)	282
EcoT22I	ATGCAT	1 cut(s)	883
EcoT38I	GRGCYC	2 cut(s)	99, 430
ErhI	CCWWGG	1 cut(s)	282
FaeI	CATG	4 cut(s)	286, 605, 614, 914
FaqI	GGGAC	1 cut(s)	154
FatI	CATG	4 cut(s)	282, 601, 610, 910
FauI	CCCGC	1 cut(s)	142
FblI	GTMKAC	1 cut(s)	456
Fnu4HI	GCNGC	5 cut(s)	42, 324, 490, 507, 781
FriOI	GRGCYC	2 cut(s)	99, 430
Fsp4HI	GCNGC	5 cut(s)	42, 324, 490, 507, 781
FspBI	CTAG	1 cut(s)	26
GlaI	GCGC	1 cut(s)	345
GluI	GCNGC	5 cut(s)	42, 324, 490, 507, 781
GsaI	CCCAGC	1 cut(s)	141
GsuI	CTGGAG	2 cut(s)	128, 680
HaeIII	GGCC	4 cut(s)	326, 469, 506, 783
HapII	CCGG	4 cut(s)	100, 784, 836, 848
HhaI	GCGC	1 cut(s)	346
Hin1II	CATG	4 cut(s)	286, 605, 614, 914
Hin6I	GCGC	1 cut(s)	344
HinP1I	GCGC	1 cut(s)	344
HincII	GTYRAC	1 cut(s)	889
HindII	GTYRAC	1 cut(s)	889
HinfI	GANTC	5 cut(s)	112, 161, 199, 252, 916
HpaII	CCGG	4 cut(s)	100, 784, 836, 848
HphI	GGTGA	3 cut(s)	156, 692, 709
Hpy166II	GTNNAC	2 cut(s)	457, 889
Hpy188I	TCNGA	3 cut(s)	402, 868, 876
Hpy188III	TCNNGA	7 cut(s)	196, 203, 484, 602, 617, 857, 911
Hpy8I	GTNNAC	2 cut(s)	457, 889
HpyAV	CCTTC	7 cut(s)	115, 200, 215, 458, 495, 721, 770
HpyCH4III	ACNGT	2 cut(s)	63, 539
HpyCH4V	TGCA	2 cut(s)	492, 881
HpyF3I	CTNAG	2 cut(s)	45, 867
Hsp92II	CATG	4 cut(s)	286, 605, 614, 914
HspAI	GCGC	1 cut(s)	344
Kzo9I	GATC	4 cut(s)	309, 541, 577, 760
LguI	GCTCTTC	1 cut(s)	236
LmnI	GCTCC	4 cut(s)	94, 102, 209, 272
Lsp1109I	GCAGC	2 cut(s)	53, 476
MabI	ACCWGGT	1 cut(s)	693
MaeI	CTAG	1 cut(s)	26
MaeIII	GTNAC	1 cut(s)	680
MalI	GATC	4 cut(s)	311, 543, 579, 762
MbiI	CCGCTC	1 cut(s)	509
MboI	GATC	4 cut(s)	309, 541, 577, 760
MflI	RGATCY	1 cut(s)	577
MhlI	GDGCHC	3 cut(s)	99, 214, 430
MluCI	AATT	1 cut(s)	396
MlyI	GAGTC	3 cut(s)	121, 155, 261
Mph1103I	ATGCAT	1 cut(s)	883
MseI	TTAA	2 cut(s)	288, 371
MslI	CAYNNNNRTG	1 cut(s)	522
MspA1I	CMGCKG	2 cut(s)	137, 584
MspI	CCGG	4 cut(s)	100, 784, 836, 848
MspR9I	CCNGG	3 cut(s)	100, 107, 695
Mva1269I	GAATGC	1 cut(s)	883
MvaI	CCWGG	2 cut(s)	107, 695
MvnI	CGCG	1 cut(s)	55
NciI	CCSGG	1 cut(s)	100
NcoI	CCATGG	1 cut(s)	282
NdeII	GATC	4 cut(s)	309, 541, 577, 760
NlaIII	CATG	4 cut(s)	286, 605, 614, 914
NlaIV	GGNNCC	4 cut(s)	96, 104, 268, 579
NmuCI	GTSAC	1 cut(s)	680
NsiI	ATGCAT	1 cut(s)	883
PagI	TCATGA	2 cut(s)	601, 910
PciSI	GCTCTTC	1 cut(s)	236
PctI	GAATGC	1 cut(s)	883
PfeI	GAWTC	2 cut(s)	199, 916
PkrI	GCNGC	5 cut(s)	43, 325, 491, 508, 782
PleI	GAGTC	3 cut(s)	120, 155, 260
PpsI	GAGTC	3 cut(s)	120, 155, 260
Psp6I	CCWGG	2 cut(s)	105, 693
PspFI	CCCAGC	1 cut(s)	137
PspGI	CCWGG	2 cut(s)	105, 693
PspN4I	GGNNCC	4 cut(s)	96, 104, 268, 579
PspPI	GGNCC	2 cut(s)	467, 504
PsuI	RGATCY	1 cut(s)	577
RsaI	GTAC	7 cut(s)	86, 236, 588, 635, 671, 840, 896
RsaNI	GTAC	7 cut(s)	85, 235, 587, 634, 670, 839, 895
RseI	CAYNNNNRTG	1 cut(s)	522
SapI	GCTCTTC	1 cut(s)	236
SaqAI	TTAA	2 cut(s)	288, 371
SatI	GCNGC	5 cut(s)	42, 324, 490, 507, 781
Sau3AI	GATC	4 cut(s)	309, 541, 577, 760
Sau96I	GGNCC	2 cut(s)	467, 504
ScaI	AGTACT	2 cut(s)	86, 635
SchI	GAGTC	3 cut(s)	121, 155, 261
ScrFI	CCNGG	3 cut(s)	100, 107, 695
SduI	GDGCHC	3 cut(s)	99, 214, 430
SetI	ASST	9 cut(s)	46, 152, 234, 360, 491, 660, 699, 732, 896
SexAI	ACCWGGT	1 cut(s)	693
SmiMI	CAYNNNNRTG	1 cut(s)	522
SmlI	CTYRAG	1 cut(s)	484
SmoI	CTYRAG	1 cut(s)	484
Sse9I	AATT	1 cut(s)	396
SsiI	CCGC	6 cut(s)	53, 135, 323, 507, 584, 780
SspI	AATATT	1 cut(s)	757
SspMI	CTAG	1 cut(s)	26
StyD4I	CCNGG	3 cut(s)	98, 105, 693
StyI	CCWWGG	1 cut(s)	282
TaaI	ACNGT	2 cut(s)	63, 539
TaqI	TCGA	2 cut(s)	197, 216
TasI	AATT	1 cut(s)	396
TatI	WGTACW	4 cut(s)	84, 234, 633, 669
TauI	GCSGC	3 cut(s)	326, 509, 783
TfiI	GAWTC	2 cut(s)	199, 916
Tru1I	TTAA	2 cut(s)	288, 371
Tru9I	TTAA	2 cut(s)	288, 371
TscAI	CASTG	3 cut(s)	544, 682, 910
TseFI	GTSAC	1 cut(s)	680
TseI	GCWGC	2 cut(s)	41, 489
Tsp45I	GTSAC	1 cut(s)	680
TspDTI	ATGAA	5 cut(s)	17, 419, 599, 618, 824
TspGWI	ACGGA	1 cut(s)	287
TspRI	CASTG	3 cut(s)	544, 682, 910
XcmI	CCANNNNNNNNNTGG	1 cut(s)	85
XmiI	GTMKAC	1 cut(s)	456
XspI	CTAG	1 cut(s)	26
ZrmI	AGTACT	2 cut(s)	86, 635
Zsp2I	ATGCAT	1 cut(s)	883

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.