Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000661

Physical Location & Seq

Genomic Coordinates Reverse (-)

8007847 .. 8008416

Gene Structure 570 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ42621

Sequence Viewer

CDS Protein Promoter (2k)

Length: 570 bp

ATGATCCCATACATTCCTCTGGAGCTCAGAGAAGGCTGGAATTCGGAAAGAGCGACCAAGTCTGGTTCGAATTTGCCTCAGATTTTCGTGCTGGGATGTACTCAGAGGAAGGCAAGCTTGAAGCAGATGAAGGAGGACCGCTGGATGAAGTTCCAGTACTGTGTGCCTTATATATTGAATCCGAAATACGAAGAAGAGAAGGAGCAGAATACTGTGGTGGAATTTTTCTTCCCACGGGAGCCTCAACTGCCCCTGGGGTGTGAACTCAATTGGGACATGGATGAAGTTGAGGATTTCACTGATAAACTTATAGAGGATGAGGAGTTGAGTGAGGATAAGAAGGAGGCATTCATGGAGTTTTTGAATGAGGAAGTAAAGAATGCTAAGAAGAATAAGAGGGAAGCGAGGAAGAAGAGAATGGAGGACCCCAAGTATCAGGAAGCTAAAACCTATCATGAGAATATGAGGCTTTACAAGATTTACCCAGTACAAATACCAAACACTCCTGTGATAGAGATGAAGTCTCATTATGTCAACTTCTACTACAGGTTTGCCCATGAGATTATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005730 GO:0006950 GO:0007088 GO:0007346 GO:0008150 GO:0009266 GO:0009408 GO:0009628 GO:0009893 GO:0010286 GO:0010369 GO:0010468 GO:0010564 GO:0010604 GO:0010628 GO:0019222 GO:0031974 GO:0031981 GO:0033043 GO:0033044 GO:0033045 GO:0033047 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044464 GO:0048518 GO:0048519 GO:0048523 GO:0048583 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051726 GO:0051783 GO:0051983 GO:0060255 GO:0060968 GO:0060969 GO:0065007 GO:0070013 GO:0080134 GO:0080135 GO:0098687 GO:1900034 GO:1901651

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

189

Amino Acids

22.94

Weight (kDa)

5.46

Isoelectric Point (pI)

52.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000661)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G10010
fragaria_vesca	FvH4_6g03222 FvH4_6g03560 FvH4_6g03561 FvH4_6g03563 FvH4_6g03590 FvH4_6g03590 FvH4_6g09260
malus_domestica	MD04G1220200.v1.1 MD12G1240700.v1.1 MD15G1083500.v1.1
prunus_persica	Prupe.1G436000_v2.0.a1 Prupe.6G174800_v2.0.a1 Prupe.6G339200_v2.0.a1
pyrus_communis	pycom08g08260 pycom15g07800 pycom15g07810
rosa_chinensis	RchiOBHm_Chr3g0451551 RchiOBHm_Chr3g0451591 RchiOBHm_Chr3g0451621 RchiOBHm_Chr3g0452131 RchiOBHm_Chr3g0459621
rosa_laevigata	RLG00000025074 RLG00000025077 RLG00000025626 RLG00000029505 RLG00000035382 RLG00000035384
rosa_multiflora	Rmu_co8173672.1_g000001 Rmu_sc0000240.1_g000011 Rmu_sc0000240.1_g000014 Rmu_sc0004924.1_g000012 Rmu_sc0004924.1_g000020 Rmu_sc0004924.1_g000023 Rmu_sc0004924.1_g000025 Rmu_sc0004924.1_g000034 Rmu_sc0004924.1_g000035 Rmu_sc0009360.1_g000006 Rmu_sc0009360.1_g000008 Rmu_sc0009360.1_g000014 Rmu_sc0009360.1_g000047 Rmu_sc0011887.1_g000001 Rmu_sc0015119.1_g000001 Rmu_sc0023706.1_g000002
rosa_roxburghii	Rroxscaffold_164G00436050 Rroxscaffold_164G00436390 Rroxscaffold_164G00436450 Rroxscaffold_164G00436460 Rroxscaffold_4G00317080 Rroxscaffold_4G00317090 Rroxscaffold_6G00420140 Rroxscaffold_6G00428920
rosa_rugosa	Rorug02G0634200 Rorug02G0634500 Rorug02G0634700 Rorug02G0635400 Rorug02G0638500 Rorug03G0036600 Rorug03G0036700
rosa_samantha	Rh1BG103700 Rh1BG103800 Rh3AG040400 Rh3BG037900 Rh3BG038200 Rh3BG041900 Rh3BG097900 Rh3CG036600 Rh3CG040300 Rh3DG037300 Rh3DG037500 Rh3DG041200 Rh3DG099300
rosa_wichuraiana	Rw0G013830 Rw0G017580 Rw0G017600 Rw3G003070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	139
AcsI	RAATTY	3 cut(s)	40, 70, 221
AfaI	GTAC	3 cut(s)	100, 158, 489
AgsI	TTSAA	3 cut(s)	121, 178, 364
AjnI	CCWGG	1 cut(s)	252
AleI	CACNNNNGTG	1 cut(s)	506
AluBI	AGCT	3 cut(s)	25, 117, 443
AluI	AGCT	3 cut(s)	25, 117, 443
Alw21I	GWGCWC	1 cut(s)	27
Alw26I	GTCTC	1 cut(s)	528
ApoI	RAATTY	3 cut(s)	40, 70, 221
AspS9I	GGNCC	2 cut(s)	136, 424
AsuII	TTCGAA	1 cut(s)	68
AvaII	GGWCC	2 cut(s)	136, 424
BanII	GRGCYC	1 cut(s)	27
BarI	GAAGNNNNNNTAC	2 cut(s)	140, 172
Bbv12I	GWGCWC	1 cut(s)	27
BciT130I	CCWGG	1 cut(s)	254
BcoDI	GTCTC	1 cut(s)	528
BfmI	CTRYAG	1 cut(s)	544
BmcAI	AGTACT	1 cut(s)	158
Bme1390I	CCNGG	1 cut(s)	254
Bme18I	GGWCC	2 cut(s)	136, 424
BmgT120I	GGNCC	2 cut(s)	136, 424
BmiI	GGNNCC	2 cut(s)	240, 426
BmrFI	CCNGG	1 cut(s)	254
BmrI	ACTGGG	1 cut(s)	479
BmuI	ACTGGG	1 cut(s)	479
BpmI	CTGGAG	1 cut(s)	41
Bpu14I	TTCGAA	1 cut(s)	68
BsaJI	CCNNGG	3 cut(s)	233, 252, 253
Bse1I	ACTGG	2 cut(s)	154, 485
BseBI	CCWGG	1 cut(s)	254
BseDI	CCNNGG	3 cut(s)	233, 252, 253
BseGI	GGATG	4 cut(s)	101, 150, 286, 322
BseMII	CTCAG	3 cut(s)	40, 92, 116
BseNI	ACTGG	2 cut(s)	154, 485
BseRI	GAGGAG	1 cut(s)	335
BseYI	CCCAGC	1 cut(s)	91
BsiHKAI	GWGCWC	1 cut(s)	27
BslFI	GGGAC	1 cut(s)	287
BsmAI	GTCTC	1 cut(s)	528
BsmFI	GGGAC	1 cut(s)	287
BsmI	GAATGC	2 cut(s)	347, 385
Bsp119I	TTCGAA	1 cut(s)	68
Bsp1286I	GDGCHC	1 cut(s)	27
Bsp143I	GATC	1 cut(s)	3
BspACI	CCGC	1 cut(s)	139
BspCNI	CTCAG	3 cut(s)	39, 91, 115
BspHI	TCATGA	1 cut(s)	454
BspLI	GGNNCC	2 cut(s)	240, 426
BspT104I	TTCGAA	1 cut(s)	68
BsrI	ACTGG	2 cut(s)	154, 485
BssECI	CCNNGG	3 cut(s)	233, 252, 253
BssMI	GATC	1 cut(s)	3
Bst2UI	CCWGG	1 cut(s)	254
Bst4CI	ACNGT	2 cut(s)	161, 214
Bst6I	CTCTTC	2 cut(s)	189, 407
BstBI	TTCGAA	1 cut(s)	68
BstC8I	GCNNGC	1 cut(s)	115
BstDEI	CTNAG	4 cut(s)	26, 78, 102, 384
BstDSI	CCRYGG	1 cut(s)	233
BstF5I	GGATG	4 cut(s)	101, 150, 286, 322
BstKTI	GATC	1 cut(s)	6
BstMAI	GTCTC	1 cut(s)	528
BstMBI	GATC	1 cut(s)	3
BstMWI	GCNNNNNNNGC	1 cut(s)	247
BstNI	CCWGG	1 cut(s)	254
BstSCI	CCNGG	1 cut(s)	252
BstSFI	CTRYAG	1 cut(s)	544
BtgI	CCRYGG	1 cut(s)	233
BtsCI	GGATG	4 cut(s)	101, 150, 286, 322
BtsIMutI	CAGTG	1 cut(s)	297
Cac8I	GCNNGC	1 cut(s)	115
CciI	TCATGA	1 cut(s)	454
Cfr13I	GGNCC	2 cut(s)	136, 424
Csp6I	GTAC	3 cut(s)	99, 157, 488
CviAII	CATG	4 cut(s)	277, 352, 455, 557
CviJI	RGCY	6 cut(s)	25, 36, 117, 241, 443, 469
CviKI_1	RGCY	6 cut(s)	25, 36, 117, 241, 443, 469
CviQI	GTAC	3 cut(s)	99, 157, 488
DdeI	CTNAG	4 cut(s)	26, 78, 102, 384
DpnI	GATC	1 cut(s)	5
DpnII	GATC	1 cut(s)	3
Eam1104I	CTCTTC	2 cut(s)	189, 407
EarI	CTCTTC	2 cut(s)	189, 407
Ecl136II	GAGCTC	1 cut(s)	25
Eco24I	GRGCYC	1 cut(s)	27
Eco47I	GGWCC	2 cut(s)	136, 424
Eco53kI	GAGCTC	1 cut(s)	25
EcoICRI	GAGCTC	1 cut(s)	25
EcoO109I	RGGNCCY	1 cut(s)	424
EcoRI	GAATTC	1 cut(s)	40
EcoRII	CCWGG	1 cut(s)	252
EcoT38I	GRGCYC	1 cut(s)	27
FaeI	CATG	4 cut(s)	280, 355, 458, 560
FalI	AAGNNNNNCTT	2 cut(s)	101, 133
FaqI	GGGAC	1 cut(s)	287
FatI	CATG	4 cut(s)	276, 351, 454, 556
FokI	GGATG	4 cut(s)	108, 157, 293, 329
FriOI	GRGCYC	1 cut(s)	27
GsaI	CCCAGC	1 cut(s)	95
GsuI	CTGGAG	1 cut(s)	41
Hin1II	CATG	4 cut(s)	280, 355, 458, 560
HincII	GTYRAC	1 cut(s)	535
HindII	GTYRAC	1 cut(s)	535
HindIII	AAGCTT	1 cut(s)	115
HinfI	GANTC	1 cut(s)	178
Hpy166II	GTNNAC	2 cut(s)	263, 535
Hpy188I	TCNGA	5 cut(s)	29, 46, 81, 105, 183
Hpy188III	TCNNGA	3 cut(s)	20, 437, 455
Hpy8I	GTNNAC	2 cut(s)	263, 535
HpyAV	CCTTC	5 cut(s)	26, 103, 124, 193, 334
HpyCH4III	ACNGT	2 cut(s)	161, 214
HpyF10VI	GCNNNNNNNGC	1 cut(s)	247
HpyF3I	CTNAG	4 cut(s)	26, 78, 102, 384
Hsp92II	CATG	4 cut(s)	280, 355, 458, 560
Kzo9I	GATC	1 cut(s)	3
LmnI	GCTCC	3 cut(s)	22, 202, 238
MalI	GATC	1 cut(s)	5
MboI	GATC	1 cut(s)	3
MboII	GAAGA	6 cut(s)	203, 206, 220, 400, 421, 424
MfeI	CAATTG	1 cut(s)	268
MhlI	GDGCHC	1 cut(s)	27
MluCI	AATT	4 cut(s)	40, 70, 221, 268
MslI	CAYNNNNRTG	1 cut(s)	506
MspA1I	CMGCKG	1 cut(s)	141
MspR9I	CCNGG	1 cut(s)	254
MunI	CAATTG	1 cut(s)	268
Mva1269I	GAATGC	2 cut(s)	347, 385
MvaI	CCWGG	1 cut(s)	254
MwoI	GCNNNNNNNGC	1 cut(s)	247
NdeII	GATC	1 cut(s)	3
NlaIII	CATG	4 cut(s)	280, 355, 458, 560
NlaIV	GGNNCC	2 cut(s)	240, 426
NspV	TTCGAA	1 cut(s)	68
OliI	CACNNNNGTG	1 cut(s)	506
PagI	TCATGA	1 cut(s)	454
PasI	CCCWGGG	1 cut(s)	253
PcsI	WCGNNNNNNNCGW	1 cut(s)	50
PctI	GAATGC	2 cut(s)	347, 385
PfeI	GAWTC	1 cut(s)	178
PflFI	GACNNNGTC	1 cut(s)	58
PpuMI	RGGWCCY	1 cut(s)	424
Psp124BI	GAGCTC	1 cut(s)	27
Psp5II	RGGWCCY	1 cut(s)	424
Psp6I	CCWGG	1 cut(s)	252
PspFI	CCCAGC	1 cut(s)	91
PspGI	CCWGG	1 cut(s)	252
PspN4I	GGNNCC	2 cut(s)	240, 426
PspPI	GGNCC	2 cut(s)	136, 424
PspPPI	RGGWCCY	1 cut(s)	424
PsyI	GACNNNGTC	1 cut(s)	58
RsaI	GTAC	3 cut(s)	100, 158, 489
RsaNI	GTAC	3 cut(s)	99, 157, 488
RseI	CAYNNNNRTG	1 cut(s)	506
SacI	GAGCTC	1 cut(s)	27
Sau3AI	GATC	1 cut(s)	3
Sau96I	GGNCC	2 cut(s)	136, 424
ScaI	AGTACT	1 cut(s)	158
ScrFI	CCNGG	1 cut(s)	254
SduI	GDGCHC	1 cut(s)	27
SetI	ASST	5 cut(s)	27, 119, 445, 452, 551
SfcI	CTRYAG	1 cut(s)	544
SfuI	TTCGAA	1 cut(s)	68
SinI	GGWCC	2 cut(s)	136, 424
SmiMI	CAYNNNNRTG	1 cut(s)	506
Sse9I	AATT	4 cut(s)	40, 70, 221, 268
SsiI	CCGC	1 cut(s)	139
SstI	GAGCTC	1 cut(s)	27
StyD4I	CCNGG	1 cut(s)	252
TaaI	ACNGT	2 cut(s)	161, 214
TaqI	TCGA	1 cut(s)	68
TasI	AATT	4 cut(s)	40, 70, 221, 268
TatI	WGTACW	3 cut(s)	98, 156, 487
TfiI	GAWTC	1 cut(s)	178
TscAI	CASTG	1 cut(s)	304
TspDTI	ATGAA	5 cut(s)	143, 161, 297, 340, 533
TspRI	CASTG	1 cut(s)	304
Tth111I	GACNNNGTC	1 cut(s)	58
VpaK11BI	GGWCC	2 cut(s)	136, 424
XapI	RAATTY	3 cut(s)	40, 70, 221
ZrmI	AGTACT	1 cut(s)	158

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.