Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Contig00786

Orthogroup ID

OG0000661

Physical Location & Seq

Genomic Coordinates Forward (+)

25919 .. 28624

Gene Structure 2706 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw0G017580.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 297 bp

ATGTCAAGAATACAGGACTTCACTGATGAACTTATAGACGCTGAGGAGTTGAGCGAGGATAAGAAGGAGGCATTCGTGGAGTTTTTGAAGGAGGAAGTAAAGAACGCTAAGAAGAAGAAGAGGGAAGCGAGGAAGAAGAGAATGGAGGACCCAAAGTATCAGGAAGCTAAAACCTATTATGAGAATATAAGGCTAATTTATAAGATCTACCCAGTACAAACACCAAACACTCCTTTGATAGAGAAGAAGGCTCGTCGTATCAACTTCTACTACGGAAATGCCGATGAGATTATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005730 GO:0006950 GO:0007088 GO:0007346 GO:0008150 GO:0009266 GO:0009408 GO:0009628 GO:0009893 GO:0010286 GO:0010369 GO:0010468 GO:0010564 GO:0010604 GO:0010628 GO:0019222 GO:0031974 GO:0031981 GO:0033043 GO:0033044 GO:0033045 GO:0033047 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044464 GO:0048518 GO:0048519 GO:0048523 GO:0048583 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051726 GO:0051783 GO:0051983 GO:0060255 GO:0060968 GO:0060969 GO:0065007 GO:0070013 GO:0080134 GO:0080135 GO:0098687 GO:1900034 GO:1901651

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

98

Amino Acids

11.88

Weight (kDa)

8.69

Isoelectric Point (pI)

55.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000661)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G10010
fragaria_vesca	FvH4_6g03222 FvH4_6g03560 FvH4_6g03561 FvH4_6g03563 FvH4_6g03590 FvH4_6g03590 FvH4_6g09260
malus_domestica	MD04G1220200.v1.1 MD12G1240700.v1.1 MD15G1083500.v1.1
prunus_persica	Prupe.1G436000_v2.0.a1 Prupe.6G174800_v2.0.a1 Prupe.6G339200_v2.0.a1
pyrus_communis	pycom08g08260 pycom15g07800 pycom15g07810
rosa_chinensis	RchiOBHm_Chr3g0451551 RchiOBHm_Chr3g0451591 RchiOBHm_Chr3g0451621 RchiOBHm_Chr3g0452131 RchiOBHm_Chr3g0459621
rosa_laevigata	RLG00000025074 RLG00000025077 RLG00000025626 RLG00000029505 RLG00000035382 RLG00000035384
rosa_multiflora	Rmu_co8173672.1_g000001 Rmu_sc0000240.1_g000011 Rmu_sc0000240.1_g000014 Rmu_sc0004924.1_g000012 Rmu_sc0004924.1_g000020 Rmu_sc0004924.1_g000023 Rmu_sc0004924.1_g000025 Rmu_sc0004924.1_g000034 Rmu_sc0004924.1_g000035 Rmu_sc0009360.1_g000006 Rmu_sc0009360.1_g000008 Rmu_sc0009360.1_g000014 Rmu_sc0009360.1_g000047 Rmu_sc0011887.1_g000001 Rmu_sc0015119.1_g000001 Rmu_sc0023706.1_g000002
rosa_roxburghii	Rroxscaffold_164G00436050 Rroxscaffold_164G00436390 Rroxscaffold_164G00436450 Rroxscaffold_164G00436460 Rroxscaffold_4G00317080 Rroxscaffold_4G00317090 Rroxscaffold_6G00420140 Rroxscaffold_6G00428920
rosa_rugosa	Rorug02G0634200 Rorug02G0634500 Rorug02G0634700 Rorug02G0635400 Rorug02G0638500 Rorug03G0036600 Rorug03G0036700
rosa_samantha	Rh1BG103700 Rh1BG103800 Rh3AG040400 Rh3BG037900 Rh3BG038200 Rh3BG041900 Rh3BG097900 Rh3CG036600 Rh3CG040300 Rh3DG037300 Rh3DG037500 Rh3DG041200 Rh3DG099300
rosa_wichuraiana	Rw0G013830 Rw0G017580 Rw0G017600 Rw3G003070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	201
AfaI	GTAC	1 cut(s)	216
AgsI	TTSAA	1 cut(s)	88
AluBI	AGCT	1 cut(s)	167
AluI	AGCT	1 cut(s)	167
AspS9I	GGNCC	1 cut(s)	148
AvaII	GGWCC	1 cut(s)	148
BbvCI	CCTCAGC	1 cut(s)	42
BglII	AGATCT	1 cut(s)	204
Bme18I	GGWCC	1 cut(s)	148
BmgT120I	GGNCC	1 cut(s)	148
BmiI	GGNNCC	1 cut(s)	150
BmrI	ACTGGG	1 cut(s)	206
BmuI	ACTGGG	1 cut(s)	206
Bpu10I	CCTNAGC	1 cut(s)	42
Bse1I	ACTGG	1 cut(s)	212
BseMII	CTCAG	1 cut(s)	33
BseNI	ACTGG	1 cut(s)	212
BseRI	GAGGAG	1 cut(s)	59
BsmI	GAATGC	1 cut(s)	71
Bsp143I	GATC	1 cut(s)	204
BspCNI	CTCAG	1 cut(s)	34
BspLI	GGNNCC	1 cut(s)	150
BsrI	ACTGG	1 cut(s)	212
BssMI	GATC	1 cut(s)	204
Bst6I	CTCTTC	2 cut(s)	113, 131
BstDEI	CTNAG	2 cut(s)	42, 108
BstKTI	GATC	1 cut(s)	207
BstMBI	GATC	1 cut(s)	204
BstX2I	RGATCY	1 cut(s)	204
BstYI	RGATCY	1 cut(s)	204
BtsIMutI	CAGTG	1 cut(s)	21
Cfr13I	GGNCC	1 cut(s)	148
CseI	GACGC	1 cut(s)	47
Csp6I	GTAC	1 cut(s)	215
CviJI	RGCY	3 cut(s)	167, 193, 251
CviKI_1	RGCY	3 cut(s)	167, 193, 251
CviQI	GTAC	1 cut(s)	215
DdeI	CTNAG	2 cut(s)	42, 108
DpnI	GATC	1 cut(s)	206
DpnII	GATC	1 cut(s)	204
Eam1104I	CTCTTC	2 cut(s)	113, 131
EarI	CTCTTC	2 cut(s)	113, 131
Eco47I	GGWCC	1 cut(s)	148
EcoO109I	RGGNCCY	1 cut(s)	148
FaiI	YATR	4 cut(s)	35, 180, 188, 201
HgaI	GACGC	1 cut(s)	47
Hpy188III	TCNNGA	2 cut(s)	6, 161
Hpy99I	CGWCG	1 cut(s)	258
HpyAV	CCTTC	3 cut(s)	58, 82, 241
HpyF3I	CTNAG	2 cut(s)	42, 108
Kzo9I	GATC	1 cut(s)	204
LpnPI	CCDG	2 cut(s)	146, 225
MalI	GATC	1 cut(s)	206
MboI	GATC	1 cut(s)	204
MboII	GAAGA	6 cut(s)	124, 127, 130, 145, 148, 256
MflI	RGATCY	1 cut(s)	204
MluCI	AATT	1 cut(s)	195
MnlI	CCTC	7 cut(s)	37, 49, 61, 85, 114, 123, 139
Mva1269I	GAATGC	1 cut(s)	71
NdeII	GATC	1 cut(s)	204
NlaIV	GGNNCC	1 cut(s)	150
PcsI	WCGNNNNNNNCGW	1 cut(s)	279
PctI	GAATGC	1 cut(s)	71
PpuMI	RGGWCCY	1 cut(s)	148
PsiI	TTATAA	1 cut(s)	201
Psp5II	RGGWCCY	1 cut(s)	148
PspN4I	GGNNCC	1 cut(s)	150
PspPI	GGNCC	1 cut(s)	148
PspPPI	RGGWCCY	1 cut(s)	148
PsuI	RGATCY	1 cut(s)	204
RsaI	GTAC	1 cut(s)	216
RsaNI	GTAC	1 cut(s)	215
Sau3AI	GATC	1 cut(s)	204
Sau96I	GGNCC	1 cut(s)	148
SetI	ASST	2 cut(s)	169, 176
SgeI	CNNG	8 cut(s)	18, 26, 67, 88, 141, 173, 224, 264
SinI	GGWCC	1 cut(s)	148
Sse9I	AATT	1 cut(s)	195
TasI	AATT	1 cut(s)	195
TatI	WGTACW	1 cut(s)	214
TscAI	CASTG	1 cut(s)	28
TspDTI	ATGAA	1 cut(s)	42
TspGWI	ACGGA	1 cut(s)	288
TspRI	CASTG	1 cut(s)	28
VpaK11BI	GGWCC	1 cut(s)	148

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.