Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004924.1

Orthogroup ID

OG0000661

Physical Location & Seq

Genomic Coordinates Forward (+)

31434 .. 32345

Gene Structure 912 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004924.1_g000012.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 912 bp

atgcagagaaaggcgttgagggaactagaggttgaaaccgccgttcagccaccgcgaaaacggcacaagccccgacctgccgagtacttggagaagcgccggagcctagagggtctatggaaggctgcctttcctgctgggacaccgaggtctcttttggactcgccactctaccattctttcaggtggaatttctcgaatcttgaagaagcactcgaagaagggggaaagctgtacaagaagagcagcagagtctatctattcggctccacggaggaggccatggttaaaagagaagtggttgctttagtccctgtggtggtggccgttgtttcggcttctccgccttcgaatatggttggagttgttttaagtgagggagaagtggaagagataattccgatgaagaggttgaagatggattgggcttcgtatgttcctttggacaagagagtagacaaagacggtcctgcaatctttgtcttgagctgcaagcaaagaagggctgctctcaaacacaaaaatgtcaagggaagacgtgatctagtgaagtttgaatatgccgtgccttatttagatccggcgcaagtgatgtgtcatgaagttcatgttcaggaggaggaggagaaatactttagtgctaatgatgatgagctggaggagttgtacttcagtggggatgatgagaatcaggtaatagaagaagatcatgaaaagaatgtcaaggtggaagaagaagcaaagcgagagaatactgatcttcgagttacggaaggcggccggagaagaagtgtggagaatatgaagatttataagttctatccggtacaaacaccggatactcctgatatatctgagtttaagaactcattcgtcaacaggtactatggcagtgctcatgaaattctgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005730 GO:0006950 GO:0007088 GO:0007346 GO:0008150 GO:0009266 GO:0009408 GO:0009628 GO:0009893 GO:0010286 GO:0010369 GO:0010468 GO:0010564 GO:0010604 GO:0010628 GO:0019222 GO:0031974 GO:0031981 GO:0033043 GO:0033044 GO:0033045 GO:0033047 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044464 GO:0048518 GO:0048519 GO:0048523 GO:0048583 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051726 GO:0051783 GO:0051983 GO:0060255 GO:0060968 GO:0060969 GO:0065007 GO:0070013 GO:0080134 GO:0080135 GO:0098687 GO:1900034 GO:1901651

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

303

Amino Acids

35.02

Weight (kDa)

5.93

Isoelectric Point (pI)

67.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000661)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G10010
fragaria_vesca	FvH4_6g03222 FvH4_6g03560 FvH4_6g03561 FvH4_6g03563 FvH4_6g03590 FvH4_6g03590 FvH4_6g09260
malus_domestica	MD04G1220200.v1.1 MD12G1240700.v1.1 MD15G1083500.v1.1
prunus_persica	Prupe.1G436000_v2.0.a1 Prupe.6G174800_v2.0.a1 Prupe.6G339200_v2.0.a1
pyrus_communis	pycom08g08260 pycom15g07800 pycom15g07810
rosa_chinensis	RchiOBHm_Chr3g0451551 RchiOBHm_Chr3g0451591 RchiOBHm_Chr3g0451621 RchiOBHm_Chr3g0452131 RchiOBHm_Chr3g0459621
rosa_laevigata	RLG00000025074 RLG00000025077 RLG00000025626 RLG00000029505 RLG00000035382 RLG00000035384
rosa_multiflora	Rmu_co8173672.1_g000001 Rmu_sc0000240.1_g000011 Rmu_sc0000240.1_g000014 Rmu_sc0004924.1_g000012 Rmu_sc0004924.1_g000020 Rmu_sc0004924.1_g000023 Rmu_sc0004924.1_g000025 Rmu_sc0004924.1_g000034 Rmu_sc0004924.1_g000035 Rmu_sc0009360.1_g000006 Rmu_sc0009360.1_g000008 Rmu_sc0009360.1_g000014 Rmu_sc0009360.1_g000047 Rmu_sc0011887.1_g000001 Rmu_sc0015119.1_g000001 Rmu_sc0023706.1_g000002
rosa_roxburghii	Rroxscaffold_164G00436050 Rroxscaffold_164G00436390 Rroxscaffold_164G00436450 Rroxscaffold_164G00436460 Rroxscaffold_4G00317080 Rroxscaffold_4G00317090 Rroxscaffold_6G00420140 Rroxscaffold_6G00428920
rosa_rugosa	Rorug02G0634200 Rorug02G0634500 Rorug02G0634700 Rorug02G0635400 Rorug02G0638500 Rorug03G0036600 Rorug03G0036700
rosa_samantha	Rh1BG103700 Rh1BG103800 Rh3AG040400 Rh3BG037900 Rh3BG038200 Rh3BG041900 Rh3BG097900 Rh3CG036600 Rh3CG040300 Rh3DG037300 Rh3DG037500 Rh3DG041200 Rh3DG099300
rosa_wichuraiana	Rw0G013830 Rw0G017580 Rw0G017600 Rw3G003070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	813
AasI	GACNNNNNNGTC	1 cut(s)	148
Acc36I	ACCTGC	1 cut(s)	85
AccI	GTMKAC	1 cut(s)	456
AccII	CGCG	1 cut(s)	55
AciI	CCGC	4 cut(s)	39, 53, 344, 777
AclWI	GGATC	1 cut(s)	572
AcoI	YGGCCR	2 cut(s)	324, 778
AcsI	RAATTY	2 cut(s)	190, 903
AcuI	CTGAAG	1 cut(s)	655
AfaI	GTAC	5 cut(s)	86, 236, 668, 828, 884
AfiI	CCNNNNNNNGG	1 cut(s)	319
AgsI	TTSAA	4 cut(s)	35, 206, 415, 557
AjiI	CACGTC	1 cut(s)	539
AluBI	AGCT	3 cut(s)	232, 489, 655
AluI	AGCT	3 cut(s)	232, 489, 655
Alw21I	GWGCWC	1 cut(s)	898
Alw26I	GTCTC	1 cut(s)	156
AlwI	GGATC	1 cut(s)	572
AoxI	GGCC	3 cut(s)	279, 324, 778
ApeKI	GCWGC	4 cut(s)	125, 246, 489, 506
ApoI	RAATTY	2 cut(s)	190, 903
Asp700I	GAANNNNTTC	1 cut(s)	869
AspLEI	GCGC	2 cut(s)	99, 586
AspS9I	GGNCC	1 cut(s)	467
AsuII	TTCGAA	1 cut(s)	350
AvaII	GGWCC	1 cut(s)	467
BbsI	GAAGAC	1 cut(s)	541
Bbv12I	GWGCWC	1 cut(s)	898
BbvI	GCAGC	4 cut(s)	112, 258, 476, 493
BccI	CCATC	1 cut(s)	412
BceAI	ACGGC	4 cut(s)	26, 77, 311, 548
BciVI	GTATCC	1 cut(s)	832
BcoDI	GTCTC	1 cut(s)	156
BfaI	CTAG	3 cut(s)	26, 107, 545
BfoI	RGCGCY	1 cut(s)	100
BfuAI	ACCTGC	1 cut(s)	85
BfuI	GTATCC	1 cut(s)	832
BisI	GCNGC	5 cut(s)	126, 247, 490, 507, 778
BlsI	GCNGC	5 cut(s)	127, 248, 491, 508, 779
BmcAI	AGTACT	1 cut(s)	86
Bme18I	GGWCC	1 cut(s)	467
BmgBI	CACGTC	1 cut(s)	539
BmgT120I	GGNCC	1 cut(s)	467
BmiI	GGNNCC	2 cut(s)	104, 268
BpiI	GAAGAC	1 cut(s)	541
BpmI	CTGGAG	1 cut(s)	677
Bpu14I	TTCGAA	1 cut(s)	350
BpuEI	CTTGAG	1 cut(s)	505
BsaBI	GATNNNNATC	1 cut(s)	687
BsaI	GGTCTC	1 cut(s)	156
BsaJI	CCNNGG	3 cut(s)	146, 270, 282
BsaWI	WCCGGW	2 cut(s)	823, 835
BsaXI	ACNNNNNCTCC	4 cut(s)	650, 680, 775, 805
Bsc4I	CCNNNNNNNGG	1 cut(s)	319
Bse8I	GATNNNNATC	1 cut(s)	687
BseDI	CCNNGG	3 cut(s)	146, 270, 282
BseGI	GGATG	1 cut(s)	685
BseJI	GATNNNNATC	1 cut(s)	687
BseLI	CCNNNNNNNGG	1 cut(s)	319
BseMII	CTCAG	1 cut(s)	846
BseRI	GAGGAG	5 cut(s)	290, 632, 635, 638, 674
BseX3I	CGGCCG	1 cut(s)	778
BseXI	GCAGC	4 cut(s)	112, 258, 476, 493
BseYI	CCCAGC	1 cut(s)	137
Bsh1236I	CGCG	1 cut(s)	55
Bsh1285I	CGRYCG	1 cut(s)	781
BshFI	GGCC	3 cut(s)	281, 326, 780
BsiEI	CGRYCG	1 cut(s)	781
BsiHKAI	GWGCWC	1 cut(s)	898
BsiSI	CCGG	5 cut(s)	100, 581, 781, 824, 836
BslFI	GGGAC	2 cut(s)	154, 296
BslI	CCNNNNNNNGG	1 cut(s)	319
BsmAI	GTCTC	1 cut(s)	156
BsmFI	GGGAC	2 cut(s)	154, 296
BsnI	GGCC	3 cut(s)	281, 326, 780
Bso31I	GGTCTC	1 cut(s)	156
Bsp119I	TTCGAA	1 cut(s)	350
Bsp1286I	GDGCHC	1 cut(s)	898
Bsp1407I	TGTACA	1 cut(s)	234
Bsp143I	GATC	4 cut(s)	541, 577, 706, 757
Bsp19I	CCATGG	1 cut(s)	282
BspACI	CCGC	4 cut(s)	39, 53, 344, 777
BspANI	GGCC	3 cut(s)	281, 326, 780
BspCNI	CTCAG	1 cut(s)	847
BspFNI	CGCG	1 cut(s)	55
BspHI	TCATGA	3 cut(s)	598, 709, 898
BspLI	GGNNCC	2 cut(s)	104, 268
BspMI	ACCTGC	1 cut(s)	85
BspPI	GGATC	1 cut(s)	572
BspQI	GCTCTTC	1 cut(s)	236
BspT104I	TTCGAA	1 cut(s)	350
BspTNI	GGTCTC	1 cut(s)	156
BsrGI	TGTACA	1 cut(s)	234
BssECI	CCNNGG	3 cut(s)	146, 270, 282
BssMI	GATC	4 cut(s)	541, 577, 706, 757
BssT1I	CCWWGG	1 cut(s)	282
Bst4CI	ACNGT	1 cut(s)	467
Bst6I	CTCTTC	3 cut(s)	236, 384, 401
BstAUI	TGTACA	1 cut(s)	234
BstBI	TTCGAA	1 cut(s)	350
BstC8I	GCNNGC	1 cut(s)	494
BstDEI	CTNAG	1 cut(s)	855
BstDSI	CCRYGG	2 cut(s)	270, 282
BstF5I	GGATG	1 cut(s)	685
BstFNI	CGCG	1 cut(s)	55
BstH2I	RGCGCY	1 cut(s)	100
BstHHI	GCGC	2 cut(s)	99, 586
BstKTI	GATC	4 cut(s)	544, 580, 709, 760
BstMAI	GTCTC	1 cut(s)	156
BstMBI	GATC	4 cut(s)	541, 577, 706, 757
BstMCI	CGRYCG	1 cut(s)	781
BstMWI	GCNNNNNNNGC	2 cut(s)	61, 134
BstUI	CGCG	1 cut(s)	55
BstV1I	GCAGC	4 cut(s)	112, 258, 476, 493
BstV2I	GAAGAC	1 cut(s)	541
BstX2I	RGATCY	1 cut(s)	577
BstYI	RGATCY	1 cut(s)	577
BstZI	CGGCCG	1 cut(s)	778
BsuI	GTATCC	1 cut(s)	832
BsuRI	GGCC	3 cut(s)	281, 326, 780
BtgI	CCRYGG	2 cut(s)	270, 282
BtrI	CACGTC	1 cut(s)	539
BtsCI	GGATG	1 cut(s)	685
BtsI	GCAGTG	1 cut(s)	898
BtsIMutI	CAGTG	2 cut(s)	679, 898
BveI	ACCTGC	1 cut(s)	85
Cac8I	GCNNGC	1 cut(s)	494
CciI	TCATGA	3 cut(s)	598, 709, 898
CfoI	GCGC	2 cut(s)	99, 586
Cfr13I	GGNCC	1 cut(s)	467
Csp6I	GTAC	5 cut(s)	85, 235, 667, 827, 883
CviAII	CATG	5 cut(s)	283, 599, 608, 710, 899
CviQI	GTAC	5 cut(s)	85, 235, 667, 827, 883
DdeI	CTNAG	1 cut(s)	855
DpnI	GATC	4 cut(s)	543, 579, 708, 759
DpnII	GATC	4 cut(s)	541, 577, 706, 757
DrdI	GACNNNNNNGTC	1 cut(s)	148
DseDI	GACNNNNNNGTC	1 cut(s)	148
EaeI	YGGCCR	2 cut(s)	324, 778
EagI	CGGCCG	1 cut(s)	778
Eam1104I	CTCTTC	3 cut(s)	236, 384, 401
EarI	CTCTTC	3 cut(s)	236, 384, 401
EciI	GGCGGA	1 cut(s)	333
EclXI	CGGCCG	1 cut(s)	778
Eco130I	CCWWGG	1 cut(s)	282
Eco31I	GGTCTC	1 cut(s)	156
Eco47I	GGWCC	1 cut(s)	467
Eco52I	CGGCCG	1 cut(s)	778
Eco57I	CTGAAG	1 cut(s)	655
EcoT14I	CCWWGG	1 cut(s)	282
ErhI	CCWWGG	1 cut(s)	282
FaeI	CATG	5 cut(s)	286, 602, 611, 713, 902
FalI	AAGNNNNNCTT	2 cut(s)	113, 145
FaqI	GGGAC	2 cut(s)	154, 296
FatI	CATG	5 cut(s)	282, 598, 607, 709, 898
FblI	GTMKAC	1 cut(s)	456
Fnu4HI	GCNGC	5 cut(s)	126, 247, 490, 507, 778
FokI	GGATG	1 cut(s)	692
Fsp4HI	GCNGC	5 cut(s)	126, 247, 490, 507, 778
FspBI	CTAG	3 cut(s)	26, 107, 545
GlaI	GCGC	2 cut(s)	98, 585
GluI	GCNGC	5 cut(s)	126, 247, 490, 507, 778
GsaI	CCCAGC	1 cut(s)	141
GsuI	CTGGAG	1 cut(s)	677
HaeII	RGCGCY	1 cut(s)	100
HaeIII	GGCC	3 cut(s)	281, 326, 780
HapII	CCGG	5 cut(s)	100, 581, 781, 824, 836
HhaI	GCGC	2 cut(s)	99, 586
Hin1II	CATG	5 cut(s)	286, 602, 611, 713, 902
Hin6I	GCGC	2 cut(s)	97, 584
HinP1I	GCGC	2 cut(s)	97, 584
HincII	GTYRAC	1 cut(s)	877
HindII	GTYRAC	1 cut(s)	877
HinfI	GANTC	4 cut(s)	161, 199, 252, 688
HpaII	CCGG	5 cut(s)	100, 581, 781, 824, 836
Hpy166II	GTNNAC	2 cut(s)	457, 877
Hpy188I	TCNGA	2 cut(s)	402, 856
Hpy188III	TCNNGA	8 cut(s)	196, 203, 484, 599, 614, 710, 845, 899
Hpy8I	GTNNAC	2 cut(s)	457, 877
HpyAV	CCTTC	5 cut(s)	115, 215, 357, 495, 767
HpyCH4III	ACNGT	1 cut(s)	467
HpyCH4IV	ACGT	1 cut(s)	538
HpyCH4V	TGCA	3 cut(s)	4, 473, 492
HpyF10VI	GCNNNNNNNGC	2 cut(s)	61, 134
HpyF3I	CTNAG	1 cut(s)	855
HpySE526I	ACGT	1 cut(s)	538
Hsp92II	CATG	5 cut(s)	286, 602, 611, 713, 902
HspAI	GCGC	2 cut(s)	97, 584
Kzo9I	GATC	4 cut(s)	541, 577, 706, 757
LguI	GCTCTTC	1 cut(s)	236
LmnI	GCTCC	2 cut(s)	102, 272
Lsp1109I	GCAGC	4 cut(s)	112, 258, 476, 493
MaeI	CTAG	3 cut(s)	26, 107, 545
MaeII	ACGT	1 cut(s)	538
MaeIII	GTNAC	1 cut(s)	766
MalI	GATC	4 cut(s)	543, 579, 708, 759
MboI	GATC	4 cut(s)	541, 577, 706, 757
MflI	RGATCY	1 cut(s)	577
MhlI	GDGCHC	1 cut(s)	898
MluCI	AATT	3 cut(s)	190, 396, 903
MlyI	GAGTC	2 cut(s)	155, 261
MmeI	TCCRAC	1 cut(s)	340
MroXI	GAANNNNTTC	1 cut(s)	869
MseI	TTAA	3 cut(s)	288, 371, 861
MslI	CAYNNNNRTG	1 cut(s)	522
MspI	CCGG	5 cut(s)	100, 581, 781, 824, 836
MvnI	CGCG	1 cut(s)	55
MwoI	GCNNNNNNNGC	2 cut(s)	61, 134
NcoI	CCATGG	1 cut(s)	282
NdeII	GATC	4 cut(s)	541, 577, 706, 757
NlaIII	CATG	5 cut(s)	286, 602, 611, 713, 902
NlaIV	GGNNCC	2 cut(s)	104, 268
NmeAIII	GCCGAG	1 cut(s)	106
NspV	TTCGAA	1 cut(s)	350
PagI	TCATGA	3 cut(s)	598, 709, 898
PciSI	GCTCTTC	1 cut(s)	236
PdmI	GAANNNNTTC	1 cut(s)	869
PfeI	GAWTC	2 cut(s)	199, 688
PkrI	GCNGC	5 cut(s)	127, 248, 491, 508, 779
PleI	GAGTC	2 cut(s)	155, 260
PpsI	GAGTC	2 cut(s)	155, 260
PsiI	TTATAA	1 cut(s)	813
PspFI	CCCAGC	1 cut(s)	137
PspN4I	GGNNCC	2 cut(s)	104, 268
PspPI	GGNCC	1 cut(s)	467
PsuI	RGATCY	1 cut(s)	577
RsaI	GTAC	5 cut(s)	86, 236, 668, 828, 884
RsaNI	GTAC	5 cut(s)	85, 235, 667, 827, 883
RseI	CAYNNNNRTG	1 cut(s)	522
SapI	GCTCTTC	1 cut(s)	236
SaqAI	TTAA	3 cut(s)	288, 371, 861
SatI	GCNGC	5 cut(s)	126, 247, 490, 507, 778
Sau3AI	GATC	4 cut(s)	541, 577, 706, 757
Sau96I	GGNCC	1 cut(s)	467
ScaI	AGTACT	1 cut(s)	86
SchI	GAGTC	2 cut(s)	155, 261
SduI	GDGCHC	1 cut(s)	898
SfuI	TTCGAA	1 cut(s)	350
SinI	GGWCC	1 cut(s)	467
SmiMI	CAYNNNNRTG	1 cut(s)	522
SmlI	CTYRAG	1 cut(s)	484
SmoI	CTYRAG	1 cut(s)	484
Sse9I	AATT	3 cut(s)	190, 396, 903
SsiI	CCGC	4 cut(s)	39, 53, 344, 777
SspMI	CTAG	3 cut(s)	26, 107, 545
StyI	CCWWGG	1 cut(s)	282
TaaI	ACNGT	1 cut(s)	467
TaiI	ACGT	1 cut(s)	541
TaqI	TCGA	4 cut(s)	197, 216, 350, 763
TasI	AATT	3 cut(s)	190, 396, 903
TatI	WGTACW	3 cut(s)	84, 234, 666
TauI	GCSGC	1 cut(s)	780
TfiI	GAWTC	2 cut(s)	199, 688
Tru1I	TTAA	3 cut(s)	288, 371, 861
Tru9I	TTAA	3 cut(s)	288, 371, 861
TscAI	CASTG	2 cut(s)	679, 898
TseI	GCWGC	4 cut(s)	125, 246, 489, 506
TspDTI	ATGAA	5 cut(s)	419, 596, 615, 726, 818
TspGWI	ACGGA	2 cut(s)	287, 785
TspRI	CASTG	2 cut(s)	679, 898
VpaK11BI	GGWCC	1 cut(s)	467
XapI	RAATTY	2 cut(s)	190, 903
XmiI	GTMKAC	1 cut(s)	456
XmnI	GAANNNNTTC	1 cut(s)	869
XspI	CTAG	3 cut(s)	26, 107, 545
ZrmI	AGTACT	1 cut(s)	86

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.