Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0009360.1

Orthogroup ID

OG0000661

Physical Location & Seq

Genomic Coordinates Forward (+)

137090 .. 138001

Gene Structure 912 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0009360.1_g000047.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 912 bp

atgaagagaaaggcgttgagggaacctctagacgccgttcagccaatgcgaaagcgggtcaagccccgacatgccgagtactcggaggagccccggagcccagagggtctatggaaggctgcctttcctgctgggacaccgaggtctgttttggactcgccactctaccattatttcaagtgggatttctcgaatcttgaaggagcactcgaagaagggggaaagctgtacaagaagagcaagagagtctatctattcggcgcaacagaagaggccatggttaaaagagaagtggttgctttgatccccgtggtggtggccgttgtttcggattctccgccttcgaatgagcttggacttgttttaagtgagggagaagtggaagagataattccgatgaagagattgaagatagactgggctccgtatgttcctttggacaagagagtagacaaagaaggttctgaaatctttgtcttgagctgcaagcaaagaagggctgctctcaaacacaaaaatgtcaagggaaacaatgatctattgaagtttgaatacgccgtgccttatttggatccagcggcaaaagtaaagtgtcatgaagttcctgttcaggaggaggagtactttagtgctaatgatgatgagctggaggaggtgtacttcagtggtgacgatgagaaccaggtgatagaagaagatgatgaaaagaatgtcatggtggaagaagaagcaaagggagaaaatattgatcttcgagttggggaaggcggccagagaagaagtgtggagaatatgatgaagatgaggatttacaagttctatccggtacacacactggatactcctgacatatcagagtttaagaatgcatttgtcaacagttactatggcactgctcatgatattctgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005730 GO:0006950 GO:0007088 GO:0007346 GO:0008150 GO:0009266 GO:0009408 GO:0009628 GO:0009893 GO:0010286 GO:0010369 GO:0010468 GO:0010564 GO:0010604 GO:0010628 GO:0019222 GO:0031974 GO:0031981 GO:0033043 GO:0033044 GO:0033045 GO:0033047 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044464 GO:0048518 GO:0048519 GO:0048523 GO:0048583 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051726 GO:0051783 GO:0051983 GO:0060255 GO:0060968 GO:0060969 GO:0065007 GO:0070013 GO:0080134 GO:0080135 GO:0098687 GO:1900034 GO:1901651

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

303

Amino Acids

34.71

Weight (kDa)

5.2

Isoelectric Point (pI)

60.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000661)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G10010
fragaria_vesca	FvH4_6g03222 FvH4_6g03560 FvH4_6g03561 FvH4_6g03563 FvH4_6g03590 FvH4_6g03590 FvH4_6g09260
malus_domestica	MD04G1220200.v1.1 MD12G1240700.v1.1 MD15G1083500.v1.1
prunus_persica	Prupe.1G436000_v2.0.a1 Prupe.6G174800_v2.0.a1 Prupe.6G339200_v2.0.a1
pyrus_communis	pycom08g08260 pycom15g07800 pycom15g07810
rosa_chinensis	RchiOBHm_Chr3g0451551 RchiOBHm_Chr3g0451591 RchiOBHm_Chr3g0451621 RchiOBHm_Chr3g0452131 RchiOBHm_Chr3g0459621
rosa_laevigata	RLG00000025074 RLG00000025077 RLG00000025626 RLG00000029505 RLG00000035382 RLG00000035384
rosa_multiflora	Rmu_co8173672.1_g000001 Rmu_sc0000240.1_g000011 Rmu_sc0000240.1_g000014 Rmu_sc0004924.1_g000012 Rmu_sc0004924.1_g000020 Rmu_sc0004924.1_g000023 Rmu_sc0004924.1_g000025 Rmu_sc0004924.1_g000034 Rmu_sc0004924.1_g000035 Rmu_sc0009360.1_g000006 Rmu_sc0009360.1_g000008 Rmu_sc0009360.1_g000014 Rmu_sc0009360.1_g000047 Rmu_sc0011887.1_g000001 Rmu_sc0015119.1_g000001 Rmu_sc0023706.1_g000002
rosa_roxburghii	Rroxscaffold_164G00436050 Rroxscaffold_164G00436390 Rroxscaffold_164G00436450 Rroxscaffold_164G00436460 Rroxscaffold_4G00317080 Rroxscaffold_4G00317090 Rroxscaffold_6G00420140 Rroxscaffold_6G00428920
rosa_rugosa	Rorug02G0634200 Rorug02G0634500 Rorug02G0634700 Rorug02G0635400 Rorug02G0638500 Rorug03G0036600 Rorug03G0036700
rosa_samantha	Rh1BG103700 Rh1BG103800 Rh3AG040400 Rh3BG037900 Rh3BG038200 Rh3BG041900 Rh3BG097900 Rh3CG036600 Rh3CG040300 Rh3DG037300 Rh3DG037500 Rh3DG041200 Rh3DG099300
rosa_wichuraiana	Rw0G013830 Rw0G017580 Rw0G017600 Rw3G003070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	142
AccI	GTMKAC	1 cut(s)	450
AciI	CCGC	4 cut(s)	55, 338, 578, 768
AclWI	GGATC	3 cut(s)	298, 566, 579
AcoI	YGGCCR	2 cut(s)	318, 769
AcuI	CTGAAG	1 cut(s)	646
AcyI	GRCGYC	1 cut(s)	33
AfaI	GTAC	5 cut(s)	80, 230, 623, 659, 828
AfiI	CCNNNNNNNGG	1 cut(s)	313
AgsI	TTSAA	5 cut(s)	178, 200, 409, 544, 551
AjnI	CCWGG	1 cut(s)	681
AluBI	AGCT	4 cut(s)	226, 352, 483, 646
AluI	AGCT	4 cut(s)	226, 352, 483, 646
Alw21I	GWGCWC	1 cut(s)	208
AlwI	GGATC	3 cut(s)	298, 566, 579
AoxI	GGCC	3 cut(s)	273, 318, 769
ApeKI	GCWGC	3 cut(s)	119, 483, 500
AspLEI	GCGC	1 cut(s)	263
AsuC2I	CCSGG	1 cut(s)	94
AsuHPI	GGTGA	2 cut(s)	680, 697
AsuII	TTCGAA	1 cut(s)	344
BamHI	GGATCC	1 cut(s)	571
BanII	GRGCYC	3 cut(s)	93, 101, 424
BarI	GAAGNNNNNNTAC	2 cut(s)	536, 568
Bbv12I	GWGCWC	1 cut(s)	208
BbvI	GCAGC	3 cut(s)	106, 470, 487
BceAI	ACGGC	3 cut(s)	20, 305, 542
BciT130I	CCWGG	1 cut(s)	683
BciVI	GTATCC	1 cut(s)	832
BcnI	CCSGG	1 cut(s)	94
BfaI	CTAG	1 cut(s)	29
BfuI	GTATCC	1 cut(s)	832
BisI	GCNGC	5 cut(s)	120, 484, 501, 579, 769
BlsI	GCNGC	5 cut(s)	121, 485, 502, 580, 770
BmcAI	AGTACT	2 cut(s)	80, 623
Bme1390I	CCNGG	2 cut(s)	94, 683
BmiI	GGNNCC	5 cut(s)	24, 90, 98, 423, 573
BmrFI	CCNGG	2 cut(s)	94, 683
BmrI	ACTGGG	1 cut(s)	427
BmuI	ACTGGG	1 cut(s)	427
BplI	GAGNNNNNCTC	2 cut(s)	10, 42
BpmI	CTGGAG	1 cut(s)	668
Bpu14I	TTCGAA	1 cut(s)	344
BpuEI	CTTGAG	1 cut(s)	499
BpuMI	CCSGG	1 cut(s)	94
BsaHI	GRCGYC	1 cut(s)	33
BsaJI	CCNNGG	4 cut(s)	92, 140, 276, 309
BsaWI	WCCGGW	1 cut(s)	823
BsaXI	ACNNNNNCTCC	4 cut(s)	605, 635, 641, 671
Bsc4I	CCNNNNNNNGG	1 cut(s)	313
Bse1I	ACTGG	2 cut(s)	422, 840
BseBI	CCWGG	1 cut(s)	683
BseDI	CCNNGG	4 cut(s)	92, 140, 276, 309
BseLI	CCNNNNNNNGG	1 cut(s)	313
BseNI	ACTGG	2 cut(s)	422, 840
BseRI	GAGGAG	4 cut(s)	101, 629, 632, 665
BseXI	GCAGC	3 cut(s)	106, 470, 487
BseYI	CCCAGC	1 cut(s)	131
BshFI	GGCC	3 cut(s)	275, 320, 771
BsiHKAI	GWGCWC	1 cut(s)	208
BsiSI	CCGG	2 cut(s)	94, 824
BslFI	GGGAC	1 cut(s)	148
BslI	CCNNNNNNNGG	1 cut(s)	313
BsmFI	GGGAC	1 cut(s)	148
BsmI	GAATGC	1 cut(s)	871
BsnI	GGCC	3 cut(s)	275, 320, 771
Bsp119I	TTCGAA	1 cut(s)	344
Bsp1286I	GDGCHC	4 cut(s)	93, 101, 208, 424
Bsp1407I	TGTACA	1 cut(s)	228
Bsp143I	GATC	4 cut(s)	303, 535, 571, 748
Bsp19I	CCATGG	1 cut(s)	276
BspACI	CCGC	4 cut(s)	55, 338, 578, 768
BspANI	GGCC	3 cut(s)	275, 320, 771
BspHI	TCATGA	2 cut(s)	595, 898
BspLI	GGNNCC	5 cut(s)	24, 90, 98, 423, 573
BspPI	GGATC	3 cut(s)	298, 566, 579
BspQI	GCTCTTC	1 cut(s)	230
BspT104I	TTCGAA	1 cut(s)	344
BsrGI	TGTACA	1 cut(s)	228
BsrI	ACTGG	2 cut(s)	422, 840
BssECI	CCNNGG	4 cut(s)	92, 140, 276, 309
BssMI	GATC	4 cut(s)	303, 535, 571, 748
BssNI	GRCGYC	1 cut(s)	33
BssT1I	CCWWGG	1 cut(s)	276
Bst2UI	CCWGG	1 cut(s)	683
Bst4CI	ACNGT	1 cut(s)	881
Bst6I	CTCTTC	4 cut(s)	230, 264, 378, 395
BstACI	GRCGYC	1 cut(s)	33
BstAUI	TGTACA	1 cut(s)	228
BstBI	TTCGAA	1 cut(s)	344
BstC8I	GCNNGC	1 cut(s)	488
BstDSI	CCRYGG	2 cut(s)	276, 309
BstHHI	GCGC	1 cut(s)	263
BstKTI	GATC	4 cut(s)	306, 538, 574, 751
BstMBI	GATC	4 cut(s)	303, 535, 571, 748
BstMWI	GCNNNNNNNGC	2 cut(s)	61, 128
BstNI	CCWGG	1 cut(s)	683
BstNSI	RCATGY	1 cut(s)	74
BstSCI	CCNGG	2 cut(s)	92, 681
BstV1I	GCAGC	3 cut(s)	106, 470, 487
BstX2I	RGATCY	1 cut(s)	571
BstYI	RGATCY	1 cut(s)	571
BsuI	GTATCC	1 cut(s)	832
BsuRI	GGCC	3 cut(s)	275, 320, 771
BtgI	CCRYGG	2 cut(s)	276, 309
BtsI	GCAGTG	1 cut(s)	891
BtsIMutI	CAGTG	3 cut(s)	670, 833, 891
Cac8I	GCNNGC	1 cut(s)	488
CciI	TCATGA	2 cut(s)	595, 898
CfoI	GCGC	1 cut(s)	263
CseI	GACGC	1 cut(s)	41
CsiI	ACCWGGT	1 cut(s)	681
Csp6I	GTAC	5 cut(s)	79, 229, 622, 658, 827
CviAII	CATG	5 cut(s)	71, 277, 596, 715, 899
CviQI	GTAC	5 cut(s)	79, 229, 622, 658, 827
DpnI	GATC	4 cut(s)	305, 537, 573, 750
DpnII	GATC	4 cut(s)	303, 535, 571, 748
DrdI	GACNNNNNNGTC	1 cut(s)	142
DseDI	GACNNNNNNGTC	1 cut(s)	142
EaeI	YGGCCR	2 cut(s)	318, 769
Eam1104I	CTCTTC	4 cut(s)	230, 264, 378, 395
EarI	CTCTTC	4 cut(s)	230, 264, 378, 395
EciI	GGCGGA	1 cut(s)	327
Eco130I	CCWWGG	1 cut(s)	276
Eco24I	GRGCYC	3 cut(s)	93, 101, 424
Eco57I	CTGAAG	1 cut(s)	646
EcoRII	CCWGG	1 cut(s)	681
EcoT14I	CCWWGG	1 cut(s)	276
EcoT22I	ATGCAT	1 cut(s)	871
EcoT38I	GRGCYC	3 cut(s)	93, 101, 424
ErhI	CCWWGG	1 cut(s)	276
FaeI	CATG	5 cut(s)	74, 280, 599, 718, 902
FalI	AAGNNNNNCTT	2 cut(s)	107, 139
FaqI	GGGAC	1 cut(s)	148
FatI	CATG	5 cut(s)	70, 276, 595, 714, 898
FauI	CCCGC	1 cut(s)	48
FblI	GTMKAC	1 cut(s)	450
Fnu4HI	GCNGC	5 cut(s)	120, 484, 501, 579, 769
FriOI	GRGCYC	3 cut(s)	93, 101, 424
Fsp4HI	GCNGC	5 cut(s)	120, 484, 501, 579, 769
FspBI	CTAG	1 cut(s)	29
GlaI	GCGC	1 cut(s)	262
GluI	GCNGC	5 cut(s)	120, 484, 501, 579, 769
GsaI	CCCAGC	1 cut(s)	135
GsuI	CTGGAG	1 cut(s)	668
HaeIII	GGCC	3 cut(s)	275, 320, 771
HapII	CCGG	2 cut(s)	94, 824
HgaI	GACGC	1 cut(s)	41
HhaI	GCGC	1 cut(s)	263
Hin1I	GRCGYC	1 cut(s)	33
Hin1II	CATG	5 cut(s)	74, 280, 599, 718, 902
Hin6I	GCGC	1 cut(s)	261
HinP1I	GCGC	1 cut(s)	261
HincII	GTYRAC	1 cut(s)	877
HindII	GTYRAC	1 cut(s)	877
HinfI	GANTC	4 cut(s)	155, 193, 246, 332
HpaII	CCGG	2 cut(s)	94, 824
HphI	GGTGA	2 cut(s)	680, 697
Hpy166II	GTNNAC	4 cut(s)	451, 658, 829, 877
Hpy188I	TCNGA	5 cut(s)	85, 331, 396, 466, 856
Hpy188III	TCNNGA	8 cut(s)	29, 190, 197, 478, 596, 611, 845, 899
Hpy8I	GTNNAC	4 cut(s)	451, 658, 829, 877
HpyAV	CCTTC	7 cut(s)	109, 194, 209, 351, 452, 489, 758
HpyCH4III	ACNGT	1 cut(s)	881
HpyCH4V	TGCA	2 cut(s)	486, 869
HpyF10VI	GCNNNNNNNGC	2 cut(s)	61, 128
Hsp92I	GRCGYC	1 cut(s)	33
Hsp92II	CATG	5 cut(s)	74, 280, 599, 718, 902
HspAI	GCGC	1 cut(s)	261
Kzo9I	GATC	4 cut(s)	303, 535, 571, 748
LguI	GCTCTTC	1 cut(s)	230
LmnI	GCTCC	4 cut(s)	88, 96, 203, 427
Lsp1109I	GCAGC	3 cut(s)	106, 470, 487
MabI	ACCWGGT	1 cut(s)	681
MaeI	CTAG	1 cut(s)	29
MaeIII	GTNAC	2 cut(s)	668, 881
MalI	GATC	4 cut(s)	305, 537, 573, 750
MboI	GATC	4 cut(s)	303, 535, 571, 748
MflI	RGATCY	1 cut(s)	571
MhlI	GDGCHC	4 cut(s)	93, 101, 208, 424
MluCI	AATT	1 cut(s)	390
MlyI	GAGTC	2 cut(s)	149, 255
Mph1103I	ATGCAT	1 cut(s)	871
MseI	TTAA	3 cut(s)	282, 365, 861
MslI	CAYNNNNRTG	1 cut(s)	516
MspA1I	CMGCKG	1 cut(s)	578
MspI	CCGG	2 cut(s)	94, 824
MspR9I	CCNGG	2 cut(s)	94, 683
Mva1269I	GAATGC	1 cut(s)	871
MvaI	CCWGG	1 cut(s)	683
MwoI	GCNNNNNNNGC	2 cut(s)	61, 128
NciI	CCSGG	1 cut(s)	94
NcoI	CCATGG	1 cut(s)	276
NdeII	GATC	4 cut(s)	303, 535, 571, 748
NlaIII	CATG	5 cut(s)	74, 280, 599, 718, 902
NlaIV	GGNNCC	5 cut(s)	24, 90, 98, 423, 573
NmeAIII	GCCGAG	1 cut(s)	100
NmuCI	GTSAC	1 cut(s)	668
NsiI	ATGCAT	1 cut(s)	871
NspI	RCATGY	1 cut(s)	74
NspV	TTCGAA	1 cut(s)	344
PagI	TCATGA	2 cut(s)	595, 898
PciSI	GCTCTTC	1 cut(s)	230
PctI	GAATGC	1 cut(s)	871
PfeI	GAWTC	2 cut(s)	193, 332
PkrI	GCNGC	5 cut(s)	121, 485, 502, 580, 770
PleI	GAGTC	2 cut(s)	149, 254
PpsI	GAGTC	2 cut(s)	149, 254
Psp6I	CCWGG	1 cut(s)	681
PspFI	CCCAGC	1 cut(s)	131
PspGI	CCWGG	1 cut(s)	681
PspN4I	GGNNCC	5 cut(s)	24, 90, 98, 423, 573
PsuI	RGATCY	1 cut(s)	571
RsaI	GTAC	5 cut(s)	80, 230, 623, 659, 828
RsaNI	GTAC	5 cut(s)	79, 229, 622, 658, 827
RseI	CAYNNNNRTG	1 cut(s)	516
SapI	GCTCTTC	1 cut(s)	230
SaqAI	TTAA	3 cut(s)	282, 365, 861
SatI	GCNGC	5 cut(s)	120, 484, 501, 579, 769
Sau3AI	GATC	4 cut(s)	303, 535, 571, 748
ScaI	AGTACT	2 cut(s)	80, 623
SchI	GAGTC	2 cut(s)	149, 255
ScrFI	CCNGG	2 cut(s)	94, 683
SduI	GDGCHC	4 cut(s)	93, 101, 208, 424
SetI	ASST	9 cut(s)	28, 146, 228, 354, 463, 485, 648, 657, 687
SexAI	ACCWGGT	1 cut(s)	681
SfuI	TTCGAA	1 cut(s)	344
SmiMI	CAYNNNNRTG	1 cut(s)	516
SmlI	CTYRAG	1 cut(s)	478
SmoI	CTYRAG	1 cut(s)	478
Sse9I	AATT	1 cut(s)	390
SsiI	CCGC	4 cut(s)	55, 338, 578, 768
SspI	AATATT	1 cut(s)	745
SspMI	CTAG	1 cut(s)	29
StyD4I	CCNGG	2 cut(s)	92, 681
StyI	CCWWGG	1 cut(s)	276
TaaI	ACNGT	1 cut(s)	881
TaqI	TCGA	4 cut(s)	191, 210, 344, 754
TasI	AATT	1 cut(s)	390
TatI	WGTACW	4 cut(s)	78, 228, 621, 657
TauI	GCSGC	2 cut(s)	581, 771
TfiI	GAWTC	2 cut(s)	193, 332
Tru1I	TTAA	3 cut(s)	282, 365, 861
Tru9I	TTAA	3 cut(s)	282, 365, 861
TscAI	CASTG	3 cut(s)	670, 840, 898
TseFI	GTSAC	1 cut(s)	668
TseI	GCWGC	3 cut(s)	119, 483, 500
Tsp45I	GTSAC	1 cut(s)	668
TspDTI	ATGAA	5 cut(s)	17, 413, 612, 717, 812
TspGWI	ACGGA	1 cut(s)	414
TspRI	CASTG	3 cut(s)	670, 840, 898
XbaI	TCTAGA	1 cut(s)	28
XceI	RCATGY	1 cut(s)	74
XcmI	CCANNNNNNNNNTGG	1 cut(s)	108
XmiI	GTMKAC	1 cut(s)	450
XspI	CTAG	1 cut(s)	29
ZrmI	AGTACT	2 cut(s)	80, 623
Zsp2I	ATGCAT	1 cut(s)	871

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.