FvH4_6g03590

No description available

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
Physical Location & Seq
Forward (+)
1974852 .. 1977996
3145 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g03590.t2

Sequence Viewer

Length: 1035 bp
ATGAGGAAAGGAGCCAAGCGAAAGGCTCGCCTGGCGGCGACGGAGGCCAAGCCCAAGCCCAAAGCCACCGCCACACGCGCCAAGCGCGTCAAGGCCTCTCAGCCGCAGCCGCAGCCGGAACCGGAGTACGTGGAGGAGCAGCGAAACCTTCAAGATCTATGGAAGGCGGCGTTCCCGGTCGGCACCGAGTGGGATCGCTTGGACTCGCTCTACCAATACGACTGGGATTTCTCGAATCTCGAGAAGGAATTCGAAGAAGAAGGAGGCAAATTCCACGGCATCGGGAACAACAAGGTCTACATCTTCAGCCAGACCGAGACTTCTTCGCCGTCCGTGCCGGTGCTGATCCCGACGCTGGTCGCCGTCGTGGCGCCTCGGCCGCCGTCGATGGAGATTGGGATCAGGTCTGTGCAGAGAGAGGAGAAGGAGATAGTTCCGATGAGGCAGATGAAGATGGATTGGATCCCTTACATTCCTCTGGAGCAAAGAGAAGGCTGGAATTCCGAGAGAGGAGCCAAGTCCGGTTCGAATTTGCCGCAGATTTTCGTGCTGGGATGCACGCAGAGGAAGGCGAGCTTGAAGCAGATGAAGGAGGACCGTTGGATGAAGTTCCAGTACTGTATGCCGTATTTGATGAATCCGAATGAGGAGGAGAAGGAGCAGAGTACTGTGGTGGATATACTCTTCCCGAGGGAGCCGCAAGCTCCGCTGTTTGTGCAGTTTGATTGGGAATTCGATGAGGTTGAGGAGTATACTGATGAGCTGATCAAGGCCGAGGAGCTGACTGAGGACAAGAAGGAGGCGTTCATGGCGTTTGTGAAGGAGGAAGTGAAGAAAGTGAAGAAGAAGATTAGGGAAGAGAAGGAAGCGAAGAAGAAGCTAATGGAGGATCCAAAGTATCAAGAAGCGAAAAGCTATTATGAGAACATGAGGCTTTACAAGATTTATCCAGTACAGACACCAAACACTCCAGTGATTGAGATGAAGTCTAAGTATATCAACTTCTACTACGGACATGCGCATGAGATTATTTGA

Protein Analysis

345

Amino Acids

40.5

Weight (kDa)

6.45

Isoelectric Point (pI)

56.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000661)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G10010
fragaria_vesca FvH4_6g03222 FvH4_6g03560 FvH4_6g03561 FvH4_6g03563 FvH4_6g03590 FvH4_6g03590 FvH4_6g09260
malus_domestica MD04G1220200.v1.1 MD12G1240700.v1.1 MD15G1083500.v1.1
prunus_persica Prupe.1G436000_v2.0.a1 Prupe.6G174800_v2.0.a1 Prupe.6G339200_v2.0.a1
pyrus_communis pycom08g08260 pycom15g07800 pycom15g07810
rosa_chinensis RchiOBHm_Chr3g0451551 RchiOBHm_Chr3g0451591 RchiOBHm_Chr3g0451621 RchiOBHm_Chr3g0452131 RchiOBHm_Chr3g0459621
rosa_laevigata RLG00000025074 RLG00000025077 RLG00000025626 RLG00000029505 RLG00000035382 RLG00000035384
rosa_multiflora Rmu_co8173672.1_g000001 Rmu_sc0000240.1_g000011 Rmu_sc0000240.1_g000014 Rmu_sc0004924.1_g000012 Rmu_sc0004924.1_g000020 Rmu_sc0004924.1_g000023 Rmu_sc0004924.1_g000025 Rmu_sc0004924.1_g000034 Rmu_sc0004924.1_g000035 Rmu_sc0009360.1_g000006 Rmu_sc0009360.1_g000008 Rmu_sc0009360.1_g000014 Rmu_sc0009360.1_g000047 Rmu_sc0011887.1_g000001 Rmu_sc0015119.1_g000001 Rmu_sc0023706.1_g000002
rosa_roxburghii Rroxscaffold_164G00436050 Rroxscaffold_164G00436390 Rroxscaffold_164G00436450 Rroxscaffold_164G00436460 Rroxscaffold_4G00317080 Rroxscaffold_4G00317090 Rroxscaffold_6G00420140 Rroxscaffold_6G00428920
rosa_rugosa Rorug02G0634200 Rorug02G0634500 Rorug02G0634700 Rorug02G0635400 Rorug02G0638500 Rorug03G0036600 Rorug03G0036700
rosa_samantha Rh1BG103700 Rh1BG103800 Rh3AG040400 Rh3BG037900 Rh3BG038200 Rh3BG041900 Rh3BG097900 Rh3CG036600 Rh3CG040300 Rh3DG037300 Rh3DG037500 Rh3DG041200 Rh3DG099300
rosa_wichuraiana Rw0G013830 Rw0G017580 Rw0G017600 Rw3G003070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 1020
AccB1I GGYRCC 2 cut(s) 182, 370
AccI GTMKAC 2 cut(s) 297, 752
AccII CGCG 2 cut(s) 78, 87
AciI CCGC 9 cut(s) 35, 69, 104, 110, 167, 380, 536, 698, 707
AclWI GGATC 7 cut(s) 201, 340, 407, 457, 470, 884, 897
AcoI YGGCCR 1 cut(s) 377
AcsI RAATTY 5 cut(s) 248, 269, 499, 529, 731
AcuI CTGAAG 1 cut(s) 289
AcyI GRCGYC 1 cut(s) 371
AdeI CACNNNGTG 1 cut(s) 189
AfaI GTAC 4 cut(s) 128, 617, 667, 954
AfiI CCNNNNNNNGG 1 cut(s) 355
AgsI TTSAA 2 cut(s) 152, 580
AjnI CCWGG 1 cut(s) 30
AleI CACNNNNGTG 1 cut(s) 971
AluBI AGCT 6 cut(s) 576, 704, 763, 781, 880, 915
AluI AGCT 6 cut(s) 576, 704, 763, 781, 880, 915
Alw26I GTCTC 1 cut(s) 311
AlwI GGATC 7 cut(s) 201, 340, 407, 457, 470, 884, 897
Ama87I CYCGRG 2 cut(s) 239, 688
AoxI GGCC 4 cut(s) 45, 93, 377, 771
ApeKI GCWGC 3 cut(s) 106, 112, 139
ApoI RAATTY 5 cut(s) 248, 269, 499, 529, 731
Asp700I GAANNNNTTC 1 cut(s) 248
AspLEI GCGC 4 cut(s) 80, 87, 373, 1021
AspS9I GGNCC 1 cut(s) 595
AsuC2I CCSGG 1 cut(s) 176
AsuII TTCGAA 2 cut(s) 252, 527
AvaI CYCGRG 2 cut(s) 239, 688
AvaII GGWCC 1 cut(s) 595
BamHI GGATCC 2 cut(s) 462, 889
BanI GGYRCC 2 cut(s) 182, 370
BarI GAAGNNNNNNTAC 4 cut(s) 599, 631, 986, 1018
BbvI GCAGC 3 cut(s) 118, 124, 151
BccI CCATC 2 cut(s) 382, 448
BceAI ACGGC 5 cut(s) 292, 313, 347, 367, 610
BciT130I CCWGG 1 cut(s) 32
BclI TGATCA 1 cut(s) 765
BcnI CCSGG 1 cut(s) 176
BcoDI GTCTC 1 cut(s) 311
BfoI RGCGCY 1 cut(s) 374
BglI GCCNNNNNGGC 1 cut(s) 368
BglII AGATCT 1 cut(s) 154
BmcAI AGTACT 2 cut(s) 617, 667
Bme1390I CCNGG 2 cut(s) 32, 176
Bme18I GGWCC 1 cut(s) 595
BmeT110I CYCGRG 2 cut(s) 239, 688
BmgT120I GGNCC 1 cut(s) 595
BmiI GGNNCC 8 cut(s) 13, 120, 184, 372, 464, 514, 696, 891
BmrFI CCNGG 2 cut(s) 32, 176
BmrI ACTGGG 1 cut(s) 232
BmsI GCATC 2 cut(s) 288, 545
BmuI ACTGGG 1 cut(s) 232
BoxI GACNNNNGTC 1 cut(s) 356
BpmI CTGGAG 2 cut(s) 500, 954
Bpu14I TTCGAA 2 cut(s) 252, 527
BpuMI CCSGG 1 cut(s) 176
BsaAI YACGTR 1 cut(s) 130
BsaBI GATNNNNATC 1 cut(s) 398
BsaHI GRCGYC 1 cut(s) 371
BsaJI CCNNGG 4 cut(s) 274, 374, 689, 774
BsaWI WCCGGW 2 cut(s) 121, 521
Bsc4I CCNNNNNNNGG 1 cut(s) 355
Bse118I RCCGGY 1 cut(s) 337
Bse1I ACTGG 4 cut(s) 227, 613, 950, 971
Bse8I GATNNNNATC 1 cut(s) 398
BseBI CCWGG 1 cut(s) 32
BseDI CCNNGG 4 cut(s) 274, 374, 689, 774
BseGI GGATG 2 cut(s) 560, 609
BseJI GATNNNNATC 1 cut(s) 398
BseLI CCNNNNNNNGG 1 cut(s) 355
BseMII CTCAG 2 cut(s) 113, 777
BseNI ACTGG 4 cut(s) 227, 613, 950, 971
BseRI GAGGAG 7 cut(s) 149, 434, 525, 662, 665, 761, 791
BseX3I CGGCCG 1 cut(s) 377
BseXI GCAGC 3 cut(s) 118, 124, 151
BseYI CCCAGC 1 cut(s) 550
BsgI GTGCAG 2 cut(s) 431, 737
Bsh1236I CGCG 2 cut(s) 78, 87
Bsh1285I CGRYCG 2 cut(s) 180, 380
BshFI GGCC 4 cut(s) 47, 95, 379, 773
BshNI GGYRCC 2 cut(s) 182, 370
BsiEI CGRYCG 2 cut(s) 180, 380
BsiHKCI CYCGRG 2 cut(s) 239, 688
BsiSI CCGG 5 cut(s) 116, 122, 176, 338, 522
BslI CCNNNNNNNGG 1 cut(s) 355
BsmAI GTCTC 1 cut(s) 311
BsnI GGCC 4 cut(s) 47, 95, 379, 773
BsoBI CYCGRG 2 cut(s) 239, 688
Bsp119I TTCGAA 2 cut(s) 252, 527
Bsp143I GATC 7 cut(s) 154, 193, 345, 399, 462, 765, 889
BspACI CCGC 9 cut(s) 35, 69, 104, 110, 167, 380, 536, 698, 707
BspANI GGCC 4 cut(s) 47, 95, 379, 773
BspCNI CTCAG 2 cut(s) 112, 778
BspFNI CGCG 2 cut(s) 78, 87
BspLI GGNNCC 8 cut(s) 13, 120, 184, 372, 464, 514, 696, 891
BspPI GGATC 7 cut(s) 201, 340, 407, 457, 470, 884, 897
BspT104I TTCGAA 2 cut(s) 252, 527
BspT107I GGYRCC 2 cut(s) 182, 370
BsrFI RCCGGY 1 cut(s) 337
BsrI ACTGG 4 cut(s) 227, 613, 950, 971
BssAI RCCGGY 1 cut(s) 337
BssECI CCNNGG 4 cut(s) 274, 374, 689, 774
BssMI GATC 7 cut(s) 154, 193, 345, 399, 462, 765, 889
BssNAI GTATAC 1 cut(s) 753
BssNI GRCGYC 1 cut(s) 371
Bst1107I GTATAC 1 cut(s) 753
Bst2UI CCWGG 1 cut(s) 32
Bst4CI ACNGT 3 cut(s) 599, 620, 670
Bst6I CTCTTC 2 cut(s) 689, 852
BstACI GRCGYC 1 cut(s) 371
BstBAI YACGTR 1 cut(s) 130
BstBI TTCGAA 2 cut(s) 252, 527
BstC8I GCNNGC 4 cut(s) 28, 560, 574, 702
BstDEI CTNAG 3 cut(s) 99, 786, 990
BstDSI CCRYGG 1 cut(s) 274
BstF5I GGATG 2 cut(s) 560, 609
BstFNI CGCG 2 cut(s) 78, 87
BstH2I RGCGCY 1 cut(s) 374
BstHHI GCGC 4 cut(s) 80, 87, 373, 1021
BstKTI GATC 7 cut(s) 157, 196, 348, 402, 465, 768, 892
BstMAI GTCTC 1 cut(s) 311
BstMBI GATC 7 cut(s) 154, 193, 345, 399, 462, 765, 889
BstMCI CGRYCG 2 cut(s) 180, 380
BstNI CCWGG 1 cut(s) 32
BstNSI RCATGY 1 cut(s) 1019
BstPAI GACNNNNGTC 1 cut(s) 356
BstSCI CCNGG 2 cut(s) 30, 174
BstUI CGCG 2 cut(s) 78, 87
BstV1I GCAGC 3 cut(s) 118, 124, 151
BstX2I RGATCY 3 cut(s) 154, 462, 889
BstYI RGATCY 3 cut(s) 154, 462, 889
BstZ17I GTATAC 1 cut(s) 753
BstZI CGGCCG 1 cut(s) 377
BsuRI GGCC 4 cut(s) 47, 95, 379, 773
BtgI CCRYGG 1 cut(s) 274
BtsCI GGATG 2 cut(s) 560, 609
BtsIMutI CAGTG 1 cut(s) 978
Cac8I GCNNGC 4 cut(s) 28, 560, 574, 702
CfoI GCGC 4 cut(s) 80, 87, 373, 1021
Cfr10I RCCGGY 1 cut(s) 337
Cfr13I GGNCC 1 cut(s) 595
CseI GACGC 2 cut(s) 76, 361
Csp6I GTAC 4 cut(s) 127, 616, 666, 953
CviAII CATG 4 cut(s) 808, 928, 1016, 1022
CviQI GTAC 4 cut(s) 127, 616, 666, 953
DdeI CTNAG 3 cut(s) 99, 786, 990
DinI GGCGCC 1 cut(s) 372
DpnI GATC 7 cut(s) 156, 195, 347, 401, 464, 767, 891
DpnII GATC 7 cut(s) 154, 193, 345, 399, 462, 765, 889
DraIII CACNNNGTG 1 cut(s) 189
EaeI YGGCCR 1 cut(s) 377
EagI CGGCCG 1 cut(s) 377
Eam1104I CTCTTC 2 cut(s) 689, 852
EarI CTCTTC 2 cut(s) 689, 852
EclXI CGGCCG 1 cut(s) 377
Eco147I AGGCCT 1 cut(s) 95
Eco47I GGWCC 1 cut(s) 595
Eco52I CGGCCG 1 cut(s) 377
Eco57I CTGAAG 1 cut(s) 289
Eco88I CYCGRG 2 cut(s) 239, 688
EcoRI GAATTC 3 cut(s) 248, 499, 731
EcoRII CCWGG 1 cut(s) 30
EgeI GGCGCC 1 cut(s) 372
EheI GGCGCC 1 cut(s) 372
FaeI CATG 4 cut(s) 811, 931, 1019, 1025
FalI AAGNNNNNCTT 2 cut(s) 560, 592
FatI CATG 4 cut(s) 807, 927, 1015, 1021
FbaI TGATCA 1 cut(s) 765
FblI GTMKAC 2 cut(s) 297, 752
FokI GGATG 2 cut(s) 567, 616
FspAI RTGCGCAY 1 cut(s) 1020
FspI TGCGCA 1 cut(s) 1020
GlaI GCGC 4 cut(s) 79, 86, 372, 1020
GsaI CCCAGC 1 cut(s) 554
GsuI CTGGAG 2 cut(s) 500, 954
HaeII RGCGCY 1 cut(s) 374
HaeIII GGCC 4 cut(s) 47, 95, 379, 773
HapII CCGG 5 cut(s) 116, 122, 176, 338, 522
HgaI GACGC 2 cut(s) 76, 361
HhaI GCGC 4 cut(s) 80, 87, 373, 1021
Hin1I GRCGYC 1 cut(s) 371
Hin1II CATG 4 cut(s) 811, 931, 1019, 1025
Hin6I GCGC 4 cut(s) 78, 85, 371, 1019
HinP1I GCGC 4 cut(s) 78, 85, 371, 1019
HinfI GANTC 3 cut(s) 203, 235, 637
HpaII CCGG 5 cut(s) 116, 122, 176, 338, 522
Hpy166II GTNNAC 2 cut(s) 298, 753
Hpy188I TCNGA 3 cut(s) 438, 505, 642
Hpy188III TCNNGA 9 cut(s) 152, 232, 239, 241, 283, 349, 479, 688, 902
Hpy8I GTNNAC 2 cut(s) 298, 753
Hpy99I CGWCG 4 cut(s) 43, 355, 368, 388
HpyCH4III ACNGT 3 cut(s) 599, 620, 670
HpyCH4IV ACGT 1 cut(s) 129
HpyCH4V TGCA 3 cut(s) 412, 558, 718
HpyF3I CTNAG 3 cut(s) 99, 786, 990
HpySE526I ACGT 1 cut(s) 129
Hsp92I GRCGYC 1 cut(s) 371
Hsp92II CATG 4 cut(s) 811, 931, 1019, 1025
HspAI GCGC 4 cut(s) 78, 85, 371, 1019
KasI GGCGCC 1 cut(s) 370
Ksp22I TGATCA 1 cut(s) 765
Kzo9I GATC 7 cut(s) 154, 193, 345, 399, 462, 765, 889
LmnI GCTCC 8 cut(s) 11, 136, 481, 512, 658, 694, 709, 778
Lsp1109I GCAGC 3 cut(s) 118, 124, 151
LweI GCATC 2 cut(s) 288, 545
MaeII ACGT 1 cut(s) 129
MalI GATC 7 cut(s) 156, 195, 347, 401, 464, 767, 891
MboI GATC 7 cut(s) 154, 193, 345, 399, 462, 765, 889
MflI RGATCY 3 cut(s) 154, 462, 889
MluCI AATT 5 cut(s) 248, 269, 499, 529, 731
Mly113I GGCGCC 1 cut(s) 371
MlyI GAGTC 1 cut(s) 197
MmeI TCCRAC 1 cut(s) 581
MroXI GAANNNNTTC 1 cut(s) 248
MslI CAYNNNNRTG 2 cut(s) 971, 1020
MspA1I CMGCKG 1 cut(s) 709
MspI CCGG 5 cut(s) 116, 122, 176, 338, 522
MspR9I CCNGG 2 cut(s) 32, 176
MvaI CCWGG 1 cut(s) 32
MvnI CGCG 2 cut(s) 78, 87
NarI GGCGCC 1 cut(s) 371
NciI CCSGG 1 cut(s) 176
NdeII GATC 7 cut(s) 154, 193, 345, 399, 462, 765, 889
NlaIII CATG 4 cut(s) 811, 931, 1019, 1025
NlaIV GGNNCC 8 cut(s) 13, 120, 184, 372, 464, 514, 696, 891
NmeAIII GCCGAG 2 cut(s) 355, 799
NsbI TGCGCA 1 cut(s) 1020
NspI RCATGY 1 cut(s) 1019
NspV TTCGAA 2 cut(s) 252, 527
OliI CACNNNNGTG 1 cut(s) 971
PaeR7I CTCGAG 1 cut(s) 239
PceI AGGCCT 1 cut(s) 95
PdmI GAANNNNTTC 1 cut(s) 248
PfeI GAWTC 2 cut(s) 235, 637
PleI GAGTC 1 cut(s) 197
PluTI GGCGCC 1 cut(s) 374
PpsI GAGTC 1 cut(s) 197
Ppu21I YACGTR 1 cut(s) 130
PshAI GACNNNNGTC 1 cut(s) 356
Psp6I CCWGG 1 cut(s) 30
PspFI CCCAGC 1 cut(s) 550
PspGI CCWGG 1 cut(s) 30
PspN4I GGNNCC 8 cut(s) 13, 120, 184, 372, 464, 514, 696, 891
PspPI GGNCC 1 cut(s) 595
PsuI RGATCY 3 cut(s) 154, 462, 889
RsaI GTAC 4 cut(s) 128, 617, 667, 954
RsaNI GTAC 4 cut(s) 127, 616, 666, 953
RseI CAYNNNNRTG 2 cut(s) 971, 1020
Sau3AI GATC 7 cut(s) 154, 193, 345, 399, 462, 765, 889
Sau96I GGNCC 1 cut(s) 595
ScaI AGTACT 2 cut(s) 617, 667
SchI GAGTC 1 cut(s) 197
ScrFI CCNGG 2 cut(s) 32, 176
SfaNI GCATC 2 cut(s) 288, 545
SfoI GGCGCC 1 cut(s) 372
Sfr274I CTCGAG 1 cut(s) 239
SfuI TTCGAA 2 cut(s) 252, 527
SinI GGWCC 1 cut(s) 595
SlaI CTCGAG 1 cut(s) 239
SmiMI CAYNNNNRTG 2 cut(s) 971, 1020
SmlI CTYRAG 1 cut(s) 239
SmoI CTYRAG 1 cut(s) 239
Sse9I AATT 5 cut(s) 248, 269, 499, 529, 731
SseBI AGGCCT 1 cut(s) 95
SsiI CCGC 9 cut(s) 35, 69, 104, 110, 167, 380, 536, 698, 707
SspDI GGCGCC 1 cut(s) 370
StuI AGGCCT 1 cut(s) 95
StyD4I CCNGG 2 cut(s) 30, 174
TaaI ACNGT 3 cut(s) 599, 620, 670
TaiI ACGT 1 cut(s) 132
TaqI TCGA 6 cut(s) 233, 240, 252, 386, 527, 735
TaqII GACCGA 1 cut(s) 329
TasI AATT 5 cut(s) 248, 269, 499, 529, 731
TatI WGTACW 3 cut(s) 615, 665, 952
TauI GCSGC 7 cut(s) 38, 106, 112, 170, 382, 538, 700
TfiI GAWTC 2 cut(s) 235, 637
TscAI CASTG 1 cut(s) 978
TseI GCWGC 3 cut(s) 106, 112, 139
TspDTI ATGAA 6 cut(s) 464, 602, 620, 650, 796, 998
TspGWI ACGGA 3 cut(s) 56, 322, 1026
TspRI CASTG 1 cut(s) 978
VpaK11BI GGWCC 1 cut(s) 595
XapI RAATTY 5 cut(s) 248, 269, 499, 529, 731
XceI RCATGY 1 cut(s) 1019
XhoI CTCGAG 1 cut(s) 239
XmiI GTMKAC 2 cut(s) 297, 752
XmnI GAANNNNTTC 1 cut(s) 248
ZrmI AGTACT 2 cut(s) 617, 667
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.