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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 1020 |
| AccB1I | GGYRCC | 2 cut(s) | 182, 370 |
| AccI | GTMKAC | 2 cut(s) | 297, 752 |
| AccII | CGCG | 2 cut(s) | 78, 87 |
| AciI | CCGC | 9 cut(s) | 35, 69, 104, 110, 167, 380, 536, 698, 707 |
| AclWI | GGATC | 7 cut(s) | 201, 340, 407, 457, 470, 884, 897 |
| AcoI | YGGCCR | 1 cut(s) | 377 |
| AcsI | RAATTY | 5 cut(s) | 248, 269, 499, 529, 731 |
| AcuI | CTGAAG | 1 cut(s) | 289 |
| AcyI | GRCGYC | 1 cut(s) | 371 |
| AdeI | CACNNNGTG | 1 cut(s) | 189 |
| AfaI | GTAC | 4 cut(s) | 128, 617, 667, 954 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 355 |
| AgsI | TTSAA | 2 cut(s) | 152, 580 |
| AjnI | CCWGG | 1 cut(s) | 30 |
| AleI | CACNNNNGTG | 1 cut(s) | 971 |
| AluBI | AGCT | 6 cut(s) | 576, 704, 763, 781, 880, 915 |
| AluI | AGCT | 6 cut(s) | 576, 704, 763, 781, 880, 915 |
| Alw26I | GTCTC | 1 cut(s) | 311 |
| AlwI | GGATC | 7 cut(s) | 201, 340, 407, 457, 470, 884, 897 |
| Ama87I | CYCGRG | 2 cut(s) | 239, 688 |
| AoxI | GGCC | 4 cut(s) | 45, 93, 377, 771 |
| ApeKI | GCWGC | 3 cut(s) | 106, 112, 139 |
| ApoI | RAATTY | 5 cut(s) | 248, 269, 499, 529, 731 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 248 |
| AspLEI | GCGC | 4 cut(s) | 80, 87, 373, 1021 |
| AspS9I | GGNCC | 1 cut(s) | 595 |
| AsuC2I | CCSGG | 1 cut(s) | 176 |
| AsuII | TTCGAA | 2 cut(s) | 252, 527 |
| AvaI | CYCGRG | 2 cut(s) | 239, 688 |
| AvaII | GGWCC | 1 cut(s) | 595 |
| BamHI | GGATCC | 2 cut(s) | 462, 889 |
| BanI | GGYRCC | 2 cut(s) | 182, 370 |
| BarI | GAAGNNNNNNTAC | 4 cut(s) | 599, 631, 986, 1018 |
| BbvI | GCAGC | 3 cut(s) | 118, 124, 151 |
| BccI | CCATC | 2 cut(s) | 382, 448 |
| BceAI | ACGGC | 5 cut(s) | 292, 313, 347, 367, 610 |
| BciT130I | CCWGG | 1 cut(s) | 32 |
| BclI | TGATCA | 1 cut(s) | 765 |
| BcnI | CCSGG | 1 cut(s) | 176 |
| BcoDI | GTCTC | 1 cut(s) | 311 |
| BfoI | RGCGCY | 1 cut(s) | 374 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 368 |
| BglII | AGATCT | 1 cut(s) | 154 |
| BmcAI | AGTACT | 2 cut(s) | 617, 667 |
| Bme1390I | CCNGG | 2 cut(s) | 32, 176 |
| Bme18I | GGWCC | 1 cut(s) | 595 |
| BmeT110I | CYCGRG | 2 cut(s) | 239, 688 |
| BmgT120I | GGNCC | 1 cut(s) | 595 |
| BmiI | GGNNCC | 8 cut(s) | 13, 120, 184, 372, 464, 514, 696, 891 |
| BmrFI | CCNGG | 2 cut(s) | 32, 176 |
| BmrI | ACTGGG | 1 cut(s) | 232 |
| BmsI | GCATC | 2 cut(s) | 288, 545 |
| BmuI | ACTGGG | 1 cut(s) | 232 |
| BoxI | GACNNNNGTC | 1 cut(s) | 356 |
| BpmI | CTGGAG | 2 cut(s) | 500, 954 |
| Bpu14I | TTCGAA | 2 cut(s) | 252, 527 |
| BpuMI | CCSGG | 1 cut(s) | 176 |
| BsaAI | YACGTR | 1 cut(s) | 130 |
| BsaBI | GATNNNNATC | 1 cut(s) | 398 |
| BsaHI | GRCGYC | 1 cut(s) | 371 |
| BsaJI | CCNNGG | 4 cut(s) | 274, 374, 689, 774 |
| BsaWI | WCCGGW | 2 cut(s) | 121, 521 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 355 |
| Bse118I | RCCGGY | 1 cut(s) | 337 |
| Bse1I | ACTGG | 4 cut(s) | 227, 613, 950, 971 |
| Bse8I | GATNNNNATC | 1 cut(s) | 398 |
| BseBI | CCWGG | 1 cut(s) | 32 |
| BseDI | CCNNGG | 4 cut(s) | 274, 374, 689, 774 |
| BseGI | GGATG | 2 cut(s) | 560, 609 |
| BseJI | GATNNNNATC | 1 cut(s) | 398 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 355 |
| BseMII | CTCAG | 2 cut(s) | 113, 777 |
| BseNI | ACTGG | 4 cut(s) | 227, 613, 950, 971 |
| BseRI | GAGGAG | 7 cut(s) | 149, 434, 525, 662, 665, 761, 791 |
| BseX3I | CGGCCG | 1 cut(s) | 377 |
| BseXI | GCAGC | 3 cut(s) | 118, 124, 151 |
| BseYI | CCCAGC | 1 cut(s) | 550 |
| BsgI | GTGCAG | 2 cut(s) | 431, 737 |
| Bsh1236I | CGCG | 2 cut(s) | 78, 87 |
| Bsh1285I | CGRYCG | 2 cut(s) | 180, 380 |
| BshFI | GGCC | 4 cut(s) | 47, 95, 379, 773 |
| BshNI | GGYRCC | 2 cut(s) | 182, 370 |
| BsiEI | CGRYCG | 2 cut(s) | 180, 380 |
| BsiHKCI | CYCGRG | 2 cut(s) | 239, 688 |
| BsiSI | CCGG | 5 cut(s) | 116, 122, 176, 338, 522 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 355 |
| BsmAI | GTCTC | 1 cut(s) | 311 |
| BsnI | GGCC | 4 cut(s) | 47, 95, 379, 773 |
| BsoBI | CYCGRG | 2 cut(s) | 239, 688 |
| Bsp119I | TTCGAA | 2 cut(s) | 252, 527 |
| Bsp143I | GATC | 7 cut(s) | 154, 193, 345, 399, 462, 765, 889 |
| BspACI | CCGC | 9 cut(s) | 35, 69, 104, 110, 167, 380, 536, 698, 707 |
| BspANI | GGCC | 4 cut(s) | 47, 95, 379, 773 |
| BspCNI | CTCAG | 2 cut(s) | 112, 778 |
| BspFNI | CGCG | 2 cut(s) | 78, 87 |
| BspLI | GGNNCC | 8 cut(s) | 13, 120, 184, 372, 464, 514, 696, 891 |
| BspPI | GGATC | 7 cut(s) | 201, 340, 407, 457, 470, 884, 897 |
| BspT104I | TTCGAA | 2 cut(s) | 252, 527 |
| BspT107I | GGYRCC | 2 cut(s) | 182, 370 |
| BsrFI | RCCGGY | 1 cut(s) | 337 |
| BsrI | ACTGG | 4 cut(s) | 227, 613, 950, 971 |
| BssAI | RCCGGY | 1 cut(s) | 337 |
| BssECI | CCNNGG | 4 cut(s) | 274, 374, 689, 774 |
| BssMI | GATC | 7 cut(s) | 154, 193, 345, 399, 462, 765, 889 |
| BssNAI | GTATAC | 1 cut(s) | 753 |
| BssNI | GRCGYC | 1 cut(s) | 371 |
| Bst1107I | GTATAC | 1 cut(s) | 753 |
| Bst2UI | CCWGG | 1 cut(s) | 32 |
| Bst4CI | ACNGT | 3 cut(s) | 599, 620, 670 |
| Bst6I | CTCTTC | 2 cut(s) | 689, 852 |
| BstACI | GRCGYC | 1 cut(s) | 371 |
| BstBAI | YACGTR | 1 cut(s) | 130 |
| BstBI | TTCGAA | 2 cut(s) | 252, 527 |
| BstC8I | GCNNGC | 4 cut(s) | 28, 560, 574, 702 |
| BstDEI | CTNAG | 3 cut(s) | 99, 786, 990 |
| BstDSI | CCRYGG | 1 cut(s) | 274 |
| BstF5I | GGATG | 2 cut(s) | 560, 609 |
| BstFNI | CGCG | 2 cut(s) | 78, 87 |
| BstH2I | RGCGCY | 1 cut(s) | 374 |
| BstHHI | GCGC | 4 cut(s) | 80, 87, 373, 1021 |
| BstKTI | GATC | 7 cut(s) | 157, 196, 348, 402, 465, 768, 892 |
| BstMAI | GTCTC | 1 cut(s) | 311 |
| BstMBI | GATC | 7 cut(s) | 154, 193, 345, 399, 462, 765, 889 |
| BstMCI | CGRYCG | 2 cut(s) | 180, 380 |
| BstNI | CCWGG | 1 cut(s) | 32 |
| BstNSI | RCATGY | 1 cut(s) | 1019 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 356 |
| BstSCI | CCNGG | 2 cut(s) | 30, 174 |
| BstUI | CGCG | 2 cut(s) | 78, 87 |
| BstV1I | GCAGC | 3 cut(s) | 118, 124, 151 |
| BstX2I | RGATCY | 3 cut(s) | 154, 462, 889 |
| BstYI | RGATCY | 3 cut(s) | 154, 462, 889 |
| BstZ17I | GTATAC | 1 cut(s) | 753 |
| BstZI | CGGCCG | 1 cut(s) | 377 |
| BsuRI | GGCC | 4 cut(s) | 47, 95, 379, 773 |
| BtgI | CCRYGG | 1 cut(s) | 274 |
| BtsCI | GGATG | 2 cut(s) | 560, 609 |
| BtsIMutI | CAGTG | 1 cut(s) | 978 |
| Cac8I | GCNNGC | 4 cut(s) | 28, 560, 574, 702 |
| CfoI | GCGC | 4 cut(s) | 80, 87, 373, 1021 |
| Cfr10I | RCCGGY | 1 cut(s) | 337 |
| Cfr13I | GGNCC | 1 cut(s) | 595 |
| CseI | GACGC | 2 cut(s) | 76, 361 |
| Csp6I | GTAC | 4 cut(s) | 127, 616, 666, 953 |
| CviAII | CATG | 4 cut(s) | 808, 928, 1016, 1022 |
| CviQI | GTAC | 4 cut(s) | 127, 616, 666, 953 |
| DdeI | CTNAG | 3 cut(s) | 99, 786, 990 |
| DinI | GGCGCC | 1 cut(s) | 372 |
| DpnI | GATC | 7 cut(s) | 156, 195, 347, 401, 464, 767, 891 |
| DpnII | GATC | 7 cut(s) | 154, 193, 345, 399, 462, 765, 889 |
| DraIII | CACNNNGTG | 1 cut(s) | 189 |
| EaeI | YGGCCR | 1 cut(s) | 377 |
| EagI | CGGCCG | 1 cut(s) | 377 |
| Eam1104I | CTCTTC | 2 cut(s) | 689, 852 |
| EarI | CTCTTC | 2 cut(s) | 689, 852 |
| EclXI | CGGCCG | 1 cut(s) | 377 |
| Eco147I | AGGCCT | 1 cut(s) | 95 |
| Eco47I | GGWCC | 1 cut(s) | 595 |
| Eco52I | CGGCCG | 1 cut(s) | 377 |
| Eco57I | CTGAAG | 1 cut(s) | 289 |
| Eco88I | CYCGRG | 2 cut(s) | 239, 688 |
| EcoRI | GAATTC | 3 cut(s) | 248, 499, 731 |
| EcoRII | CCWGG | 1 cut(s) | 30 |
| EgeI | GGCGCC | 1 cut(s) | 372 |
| EheI | GGCGCC | 1 cut(s) | 372 |
| FaeI | CATG | 4 cut(s) | 811, 931, 1019, 1025 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 560, 592 |
| FatI | CATG | 4 cut(s) | 807, 927, 1015, 1021 |
| FbaI | TGATCA | 1 cut(s) | 765 |
| FblI | GTMKAC | 2 cut(s) | 297, 752 |
| FokI | GGATG | 2 cut(s) | 567, 616 |
| FspAI | RTGCGCAY | 1 cut(s) | 1020 |
| FspI | TGCGCA | 1 cut(s) | 1020 |
| GlaI | GCGC | 4 cut(s) | 79, 86, 372, 1020 |
| GsaI | CCCAGC | 1 cut(s) | 554 |
| GsuI | CTGGAG | 2 cut(s) | 500, 954 |
| HaeII | RGCGCY | 1 cut(s) | 374 |
| HaeIII | GGCC | 4 cut(s) | 47, 95, 379, 773 |
| HapII | CCGG | 5 cut(s) | 116, 122, 176, 338, 522 |
| HgaI | GACGC | 2 cut(s) | 76, 361 |
| HhaI | GCGC | 4 cut(s) | 80, 87, 373, 1021 |
| Hin1I | GRCGYC | 1 cut(s) | 371 |
| Hin1II | CATG | 4 cut(s) | 811, 931, 1019, 1025 |
| Hin6I | GCGC | 4 cut(s) | 78, 85, 371, 1019 |
| HinP1I | GCGC | 4 cut(s) | 78, 85, 371, 1019 |
| HinfI | GANTC | 3 cut(s) | 203, 235, 637 |
| HpaII | CCGG | 5 cut(s) | 116, 122, 176, 338, 522 |
| Hpy166II | GTNNAC | 2 cut(s) | 298, 753 |
| Hpy188I | TCNGA | 3 cut(s) | 438, 505, 642 |
| Hpy188III | TCNNGA | 9 cut(s) | 152, 232, 239, 241, 283, 349, 479, 688, 902 |
| Hpy8I | GTNNAC | 2 cut(s) | 298, 753 |
| Hpy99I | CGWCG | 4 cut(s) | 43, 355, 368, 388 |
| HpyCH4III | ACNGT | 3 cut(s) | 599, 620, 670 |
| HpyCH4IV | ACGT | 1 cut(s) | 129 |
| HpyCH4V | TGCA | 3 cut(s) | 412, 558, 718 |
| HpyF3I | CTNAG | 3 cut(s) | 99, 786, 990 |
| HpySE526I | ACGT | 1 cut(s) | 129 |
| Hsp92I | GRCGYC | 1 cut(s) | 371 |
| Hsp92II | CATG | 4 cut(s) | 811, 931, 1019, 1025 |
| HspAI | GCGC | 4 cut(s) | 78, 85, 371, 1019 |
| KasI | GGCGCC | 1 cut(s) | 370 |
| Ksp22I | TGATCA | 1 cut(s) | 765 |
| Kzo9I | GATC | 7 cut(s) | 154, 193, 345, 399, 462, 765, 889 |
| LmnI | GCTCC | 8 cut(s) | 11, 136, 481, 512, 658, 694, 709, 778 |
| Lsp1109I | GCAGC | 3 cut(s) | 118, 124, 151 |
| LweI | GCATC | 2 cut(s) | 288, 545 |
| MaeII | ACGT | 1 cut(s) | 129 |
| MalI | GATC | 7 cut(s) | 156, 195, 347, 401, 464, 767, 891 |
| MboI | GATC | 7 cut(s) | 154, 193, 345, 399, 462, 765, 889 |
| MflI | RGATCY | 3 cut(s) | 154, 462, 889 |
| MluCI | AATT | 5 cut(s) | 248, 269, 499, 529, 731 |
| Mly113I | GGCGCC | 1 cut(s) | 371 |
| MlyI | GAGTC | 1 cut(s) | 197 |
| MmeI | TCCRAC | 1 cut(s) | 581 |
| MroXI | GAANNNNTTC | 1 cut(s) | 248 |
| MslI | CAYNNNNRTG | 2 cut(s) | 971, 1020 |
| MspA1I | CMGCKG | 1 cut(s) | 709 |
| MspI | CCGG | 5 cut(s) | 116, 122, 176, 338, 522 |
| MspR9I | CCNGG | 2 cut(s) | 32, 176 |
| MvaI | CCWGG | 1 cut(s) | 32 |
| MvnI | CGCG | 2 cut(s) | 78, 87 |
| NarI | GGCGCC | 1 cut(s) | 371 |
| NciI | CCSGG | 1 cut(s) | 176 |
| NdeII | GATC | 7 cut(s) | 154, 193, 345, 399, 462, 765, 889 |
| NlaIII | CATG | 4 cut(s) | 811, 931, 1019, 1025 |
| NlaIV | GGNNCC | 8 cut(s) | 13, 120, 184, 372, 464, 514, 696, 891 |
| NmeAIII | GCCGAG | 2 cut(s) | 355, 799 |
| NsbI | TGCGCA | 1 cut(s) | 1020 |
| NspI | RCATGY | 1 cut(s) | 1019 |
| NspV | TTCGAA | 2 cut(s) | 252, 527 |
| OliI | CACNNNNGTG | 1 cut(s) | 971 |
| PaeR7I | CTCGAG | 1 cut(s) | 239 |
| PceI | AGGCCT | 1 cut(s) | 95 |
| PdmI | GAANNNNTTC | 1 cut(s) | 248 |
| PfeI | GAWTC | 2 cut(s) | 235, 637 |
| PleI | GAGTC | 1 cut(s) | 197 |
| PluTI | GGCGCC | 1 cut(s) | 374 |
| PpsI | GAGTC | 1 cut(s) | 197 |
| Ppu21I | YACGTR | 1 cut(s) | 130 |
| PshAI | GACNNNNGTC | 1 cut(s) | 356 |
| Psp6I | CCWGG | 1 cut(s) | 30 |
| PspFI | CCCAGC | 1 cut(s) | 550 |
| PspGI | CCWGG | 1 cut(s) | 30 |
| PspN4I | GGNNCC | 8 cut(s) | 13, 120, 184, 372, 464, 514, 696, 891 |
| PspPI | GGNCC | 1 cut(s) | 595 |
| PsuI | RGATCY | 3 cut(s) | 154, 462, 889 |
| RsaI | GTAC | 4 cut(s) | 128, 617, 667, 954 |
| RsaNI | GTAC | 4 cut(s) | 127, 616, 666, 953 |
| RseI | CAYNNNNRTG | 2 cut(s) | 971, 1020 |
| Sau3AI | GATC | 7 cut(s) | 154, 193, 345, 399, 462, 765, 889 |
| Sau96I | GGNCC | 1 cut(s) | 595 |
| ScaI | AGTACT | 2 cut(s) | 617, 667 |
| SchI | GAGTC | 1 cut(s) | 197 |
| ScrFI | CCNGG | 2 cut(s) | 32, 176 |
| SfaNI | GCATC | 2 cut(s) | 288, 545 |
| SfoI | GGCGCC | 1 cut(s) | 372 |
| Sfr274I | CTCGAG | 1 cut(s) | 239 |
| SfuI | TTCGAA | 2 cut(s) | 252, 527 |
| SinI | GGWCC | 1 cut(s) | 595 |
| SlaI | CTCGAG | 1 cut(s) | 239 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 971, 1020 |
| SmlI | CTYRAG | 1 cut(s) | 239 |
| SmoI | CTYRAG | 1 cut(s) | 239 |
| Sse9I | AATT | 5 cut(s) | 248, 269, 499, 529, 731 |
| SseBI | AGGCCT | 1 cut(s) | 95 |
| SsiI | CCGC | 9 cut(s) | 35, 69, 104, 110, 167, 380, 536, 698, 707 |
| SspDI | GGCGCC | 1 cut(s) | 370 |
| StuI | AGGCCT | 1 cut(s) | 95 |
| StyD4I | CCNGG | 2 cut(s) | 30, 174 |
| TaaI | ACNGT | 3 cut(s) | 599, 620, 670 |
| TaiI | ACGT | 1 cut(s) | 132 |
| TaqI | TCGA | 6 cut(s) | 233, 240, 252, 386, 527, 735 |
| TaqII | GACCGA | 1 cut(s) | 329 |
| TasI | AATT | 5 cut(s) | 248, 269, 499, 529, 731 |
| TatI | WGTACW | 3 cut(s) | 615, 665, 952 |
| TauI | GCSGC | 7 cut(s) | 38, 106, 112, 170, 382, 538, 700 |
| TfiI | GAWTC | 2 cut(s) | 235, 637 |
| TscAI | CASTG | 1 cut(s) | 978 |
| TseI | GCWGC | 3 cut(s) | 106, 112, 139 |
| TspDTI | ATGAA | 6 cut(s) | 464, 602, 620, 650, 796, 998 |
| TspGWI | ACGGA | 3 cut(s) | 56, 322, 1026 |
| TspRI | CASTG | 1 cut(s) | 978 |
| VpaK11BI | GGWCC | 1 cut(s) | 595 |
| XapI | RAATTY | 5 cut(s) | 248, 269, 499, 529, 731 |
| XceI | RCATGY | 1 cut(s) | 1019 |
| XhoI | CTCGAG | 1 cut(s) | 239 |
| XmiI | GTMKAC | 2 cut(s) | 297, 752 |
| XmnI | GAANNNNTTC | 1 cut(s) | 248 |
| ZrmI | AGTACT | 2 cut(s) | 617, 667 |