Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0000661

Physical Location & Seq

Genomic Coordinates Forward (+)

1961248 .. 1962117

Gene Structure 870 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g03563.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 399 bp

ATGGAGATTGCGGTCAGGGCCGTGCAGAAAAAAAAAGAGGAGGAGAAGGTGATAGTTCCGATGAGGTATATGAAGATGGATTGGATCCCTTACATTCCTCTGGAGCAAAGAGAAGGCTGGAGTTCCGAGAGAGCAGCCAAGTCGTCTGGTGGTTCCAACTTGCCTCAGATTTTCGTGCTGGGATGCACGCAGAGGAAGGCGAGCATTAAGCAGATGAAGGAGGACCGTTGGTTCCAGTTCCAGTATTGTATGCCGTATATGATGAATCCGAAGGAGGAGGAGAAGAATTCGAAGAAGCCGATCGATACTGAGGTTGATATACTCTTCCCAAGGGAGCCGGAAGCGCCTCTGGTCTTACGATTCGATTGGAAATTTGACGAACTTGAGGAGATAAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005730 GO:0006950 GO:0007088 GO:0007346 GO:0008150 GO:0009266 GO:0009408 GO:0009628 GO:0009893 GO:0010286 GO:0010369 GO:0010468 GO:0010564 GO:0010604 GO:0010628 GO:0019222 GO:0031974 GO:0031981 GO:0033043 GO:0033044 GO:0033045 GO:0033047 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044464 GO:0048518 GO:0048519 GO:0048523 GO:0048583 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051726 GO:0051783 GO:0051983 GO:0060255 GO:0060968 GO:0060969 GO:0065007 GO:0070013 GO:0080134 GO:0080135 GO:0098687 GO:1900034 GO:1901651

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

133

Amino Acids

15.75

Weight (kDa)

5.7

Isoelectric Point (pI)

63.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000661)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G10010
fragaria_vesca	FvH4_6g03222 FvH4_6g03560 FvH4_6g03561 FvH4_6g03563 FvH4_6g03590 FvH4_6g03590 FvH4_6g09260
malus_domestica	MD04G1220200.v1.1 MD12G1240700.v1.1 MD15G1083500.v1.1
prunus_persica	Prupe.1G436000_v2.0.a1 Prupe.6G174800_v2.0.a1 Prupe.6G339200_v2.0.a1
pyrus_communis	pycom08g08260 pycom15g07800 pycom15g07810
rosa_chinensis	RchiOBHm_Chr3g0451551 RchiOBHm_Chr3g0451591 RchiOBHm_Chr3g0451621 RchiOBHm_Chr3g0452131 RchiOBHm_Chr3g0459621
rosa_laevigata	RLG00000025074 RLG00000025077 RLG00000025626 RLG00000029505 RLG00000035382 RLG00000035384
rosa_multiflora	Rmu_co8173672.1_g000001 Rmu_sc0000240.1_g000011 Rmu_sc0000240.1_g000014 Rmu_sc0004924.1_g000012 Rmu_sc0004924.1_g000020 Rmu_sc0004924.1_g000023 Rmu_sc0004924.1_g000025 Rmu_sc0004924.1_g000034 Rmu_sc0004924.1_g000035 Rmu_sc0009360.1_g000006 Rmu_sc0009360.1_g000008 Rmu_sc0009360.1_g000014 Rmu_sc0009360.1_g000047 Rmu_sc0011887.1_g000001 Rmu_sc0015119.1_g000001 Rmu_sc0023706.1_g000002
rosa_roxburghii	Rroxscaffold_164G00436050 Rroxscaffold_164G00436390 Rroxscaffold_164G00436450 Rroxscaffold_164G00436460 Rroxscaffold_4G00317080 Rroxscaffold_4G00317090 Rroxscaffold_6G00420140 Rroxscaffold_6G00428920
rosa_rugosa	Rorug02G0634200 Rorug02G0634500 Rorug02G0634700 Rorug02G0635400 Rorug02G0638500 Rorug03G0036600 Rorug03G0036700
rosa_samantha	Rh1BG103700 Rh1BG103800 Rh3AG040400 Rh3BG037900 Rh3BG038200 Rh3BG041900 Rh3BG097900 Rh3CG036600 Rh3CG040300 Rh3DG037300 Rh3DG037500 Rh3DG041200 Rh3DG099300
rosa_wichuraiana	Rw0G013830 Rw0G017580 Rw0G017600 Rw3G003070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	11
AclWI	GGATC	2 cut(s)	79, 92
AcsI	RAATTY	2 cut(s)	286, 371
AloI	GAACNNNNNNTCC	2 cut(s)	215, 247
AluBI	AGCT	1 cut(s)	396
AluI	AGCT	1 cut(s)	396
AlwI	GGATC	2 cut(s)	79, 92
AoxI	GGCC	1 cut(s)	18
ApeKI	GCWGC	1 cut(s)	134
ApoI	RAATTY	2 cut(s)	286, 371
AspLEI	GCGC	1 cut(s)	346
AspS9I	GGNCC	2 cut(s)	18, 223
AsuHPI	GGTGA	1 cut(s)	61
AsuII	TTCGAA	1 cut(s)	290
AvaII	GGWCC	1 cut(s)	223
BaeI	ACNNNNGTAYC	2 cut(s)	297, 330
BamHI	GGATCC	1 cut(s)	84
BbvI	GCAGC	1 cut(s)	146
BccI	CCATC	1 cut(s)	70
BceAI	ACGGC	2 cut(s)	5, 238
BcgI	CGANNNNNNTGC	2 cut(s)	123, 157
BfoI	RGCGCY	1 cut(s)	347
BisI	GCNGC	1 cut(s)	135
BlsI	GCNGC	1 cut(s)	136
Bme18I	GGWCC	1 cut(s)	223
BmgT120I	GGNCC	2 cut(s)	18, 223
BmiI	GGNNCC	4 cut(s)	86, 154, 233, 336
BmsI	GCATC	1 cut(s)	173
BpmI	CTGGAG	2 cut(s)	122, 139
Bpu14I	TTCGAA	1 cut(s)	290
Bsa29I	ATCGAT	1 cut(s)	303
BsaJI	CCNNGG	1 cut(s)	329
Bse1I	ACTGG	2 cut(s)	235, 241
BseCI	ATCGAT	1 cut(s)	303
BseDI	CCNNGG	1 cut(s)	329
BseGI	GGATG	1 cut(s)	188
BseMII	CTCAG	2 cut(s)	179, 300
BseNI	ACTGG	2 cut(s)	235, 241
BseRI	GAGGAG	4 cut(s)	53, 56, 290, 293
BseXI	GCAGC	1 cut(s)	146
BseYI	CCCAGC	1 cut(s)	178
BsgI	GTGCAG	1 cut(s)	44
Bsh1285I	CGRYCG	1 cut(s)	303
BshFI	GGCC	1 cut(s)	20
BshVI	ATCGAT	1 cut(s)	303
BsiEI	CGRYCG	1 cut(s)	303
BsiSI	CCGG	1 cut(s)	338
BsnI	GGCC	1 cut(s)	20
Bsp119I	TTCGAA	1 cut(s)	290
Bsp143I	GATC	2 cut(s)	84, 300
BspACI	CCGC	1 cut(s)	11
BspANI	GGCC	1 cut(s)	20
BspCNI	CTCAG	2 cut(s)	178, 301
BspDI	ATCGAT	1 cut(s)	303
BspLI	GGNNCC	4 cut(s)	86, 154, 233, 336
BspPI	GGATC	2 cut(s)	79, 92
BspT104I	TTCGAA	1 cut(s)	290
BsrI	ACTGG	2 cut(s)	235, 241
BssECI	CCNNGG	1 cut(s)	329
BssMI	GATC	2 cut(s)	84, 300
BssT1I	CCWWGG	1 cut(s)	329
Bst4CI	ACNGT	1 cut(s)	227
Bst6I	CTCTTC	1 cut(s)	329
BstBI	TTCGAA	1 cut(s)	290
BstC8I	GCNNGC	2 cut(s)	188, 202
BstDEI	CTNAG	2 cut(s)	165, 309
BstF5I	GGATG	1 cut(s)	188
BstH2I	RGCGCY	1 cut(s)	347
BstHHI	GCGC	1 cut(s)	346
BstKTI	GATC	2 cut(s)	87, 303
BstMBI	GATC	2 cut(s)	84, 300
BstMCI	CGRYCG	1 cut(s)	303
BstMWI	GCNNNNNNNGC	2 cut(s)	17, 343
BstV1I	GCAGC	1 cut(s)	146
BstX2I	RGATCY	1 cut(s)	84
BstYI	RGATCY	1 cut(s)	84
Bsu15I	ATCGAT	1 cut(s)	303
BsuRI	GGCC	1 cut(s)	20
BsuTUI	ATCGAT	1 cut(s)	303
BtsCI	GGATG	1 cut(s)	188
Cac8I	GCNNGC	2 cut(s)	188, 202
CfoI	GCGC	1 cut(s)	346
Cfr13I	GGNCC	2 cut(s)	18, 223
ClaI	ATCGAT	1 cut(s)	303
CviJI	RGCY	6 cut(s)	20, 117, 137, 298, 337, 396
CviKI_1	RGCY	6 cut(s)	20, 117, 137, 298, 337, 396
DdeI	CTNAG	2 cut(s)	165, 309
DpnI	GATC	2 cut(s)	86, 302
DpnII	GATC	2 cut(s)	84, 300
Eam1104I	CTCTTC	1 cut(s)	329
EarI	CTCTTC	1 cut(s)	329
Eco130I	CCWWGG	1 cut(s)	329
Eco47I	GGWCC	1 cut(s)	223
EcoRI	GAATTC	1 cut(s)	286
EcoT14I	CCWWGG	1 cut(s)	329
ErhI	CCWWGG	1 cut(s)	329
FaiI	YATR	6 cut(s)	69, 71, 251, 258, 260, 320
Fnu4HI	GCNGC	1 cut(s)	135
FokI	GGATG	1 cut(s)	195
Fsp4HI	GCNGC	1 cut(s)	135
GlaI	GCGC	1 cut(s)	345
GluI	GCNGC	1 cut(s)	135
GsaI	CCCAGC	1 cut(s)	182
GsuI	CTGGAG	2 cut(s)	122, 139
HaeII	RGCGCY	1 cut(s)	347
HaeIII	GGCC	1 cut(s)	20
HapII	CCGG	1 cut(s)	338
HhaI	GCGC	1 cut(s)	346
Hin6I	GCGC	1 cut(s)	344
HinP1I	GCGC	1 cut(s)	344
HinfI	GANTC	2 cut(s)	265, 360
HpaII	CCGG	1 cut(s)	338
HphI	GGTGA	1 cut(s)	61
Hpy188I	TCNGA	4 cut(s)	60, 127, 168, 270
Hpy188III	TCNNGA	1 cut(s)	101
HpyAV	CCTTC	5 cut(s)	40, 107, 190, 211, 265
HpyCH4III	ACNGT	1 cut(s)	227
HpyCH4V	TGCA	2 cut(s)	25, 186
HpyF10VI	GCNNNNNNNGC	2 cut(s)	17, 343
HpyF3I	CTNAG	2 cut(s)	165, 309
HspAI	GCGC	1 cut(s)	344
Kzo9I	GATC	2 cut(s)	84, 300
LmnI	GCTCC	2 cut(s)	103, 334
LpnPI	CCDG	8 cut(s)	86, 103, 132, 164, 248, 254, 335, 351
Lsp1109I	GCAGC	1 cut(s)	146
LweI	GCATC	1 cut(s)	173
MalI	GATC	2 cut(s)	86, 302
MboI	GATC	2 cut(s)	84, 300
MboII	GAAGA	4 cut(s)	85, 295, 304, 316
MflI	RGATCY	1 cut(s)	84
MluCI	AATT	2 cut(s)	286, 371
MmeI	TCCRAC	1 cut(s)	180
MseI	TTAA	1 cut(s)	207
MspI	CCGG	1 cut(s)	338
MwoI	GCNNNNNNNGC	2 cut(s)	17, 343
NdeII	GATC	2 cut(s)	84, 300
NlaIV	GGNNCC	4 cut(s)	86, 154, 233, 336
NspV	TTCGAA	1 cut(s)	290
PcsI	WCGNNNNNNNCGW	1 cut(s)	296
PfeI	GAWTC	2 cut(s)	265, 360
PkrI	GCNGC	1 cut(s)	136
Ple19I	CGATCG	1 cut(s)	303
PspFI	CCCAGC	1 cut(s)	178
PspN4I	GGNNCC	4 cut(s)	86, 154, 233, 336
PspPI	GGNCC	2 cut(s)	18, 223
PsuI	RGATCY	1 cut(s)	84
PvuI	CGATCG	1 cut(s)	303
SaqAI	TTAA	1 cut(s)	207
SatI	GCNGC	1 cut(s)	135
Sau3AI	GATC	2 cut(s)	84, 300
Sau96I	GGNCC	2 cut(s)	18, 223
SetI	ASST	4 cut(s)	51, 68, 315, 398
SfaNI	GCATC	1 cut(s)	173
SfuI	TTCGAA	1 cut(s)	290
SinI	GGWCC	1 cut(s)	223
SmlI	CTYRAG	1 cut(s)	383
SmoI	CTYRAG	1 cut(s)	383
Sse9I	AATT	2 cut(s)	286, 371
SsiI	CCGC	1 cut(s)	11
StyI	CCWWGG	1 cut(s)	329
TaaI	ACNGT	1 cut(s)	227
TaqI	TCGA	3 cut(s)	290, 303, 363
TasI	AATT	2 cut(s)	286, 371
TfiI	GAWTC	2 cut(s)	265, 360
Tru1I	TTAA	1 cut(s)	207
Tru9I	TTAA	1 cut(s)	207
TseI	GCWGC	1 cut(s)	134
TspDTI	ATGAA	3 cut(s)	86, 230, 278
VpaK11BI	GGWCC	1 cut(s)	223
XapI	RAATTY	2 cut(s)	286, 371

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.