Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0000661

Physical Location & Seq

Genomic Coordinates Reverse (-)

42207483 .. 42208200

Gene Structure 718 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00317090.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 264 bp

ATGGCGGTGAGTAACAAGATATATAGTCCTCATAGAAAGGCTTTGAGGGAACTAGAGGTTGAAATTGCAGCTCAGCCACTACGAAAGCGGGTCAAGCCCCGGTCCGCCGAGTACTTGGAGGAGCCCCAGAGCTTGGAGGGTCTATGGAAGGCTGCATTTCCGGTCGGGACACTGAGGTCTGTTTTGGACTCACCACTCTACCATACTTTCAAGTGGAATTTCTCAAATCTTGAAGAAGCACTCGAAGAAGGGGGCAAGCTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005730 GO:0006950 GO:0007088 GO:0007346 GO:0008150 GO:0009266 GO:0009408 GO:0009628 GO:0009893 GO:0010286 GO:0010369 GO:0010468 GO:0010564 GO:0010604 GO:0010628 GO:0019222 GO:0031974 GO:0031981 GO:0033043 GO:0033044 GO:0033045 GO:0033047 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044464 GO:0048518 GO:0048519 GO:0048523 GO:0048583 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051726 GO:0051783 GO:0051983 GO:0060255 GO:0060968 GO:0060969 GO:0065007 GO:0070013 GO:0080134 GO:0080135 GO:0098687 GO:1900034 GO:1901651

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

87

Amino Acids

9.97

Weight (kDa)

8.03

Isoelectric Point (pI)

73.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000661)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G10010
fragaria_vesca	FvH4_6g03222 FvH4_6g03560 FvH4_6g03561 FvH4_6g03563 FvH4_6g03590 FvH4_6g03590 FvH4_6g09260
malus_domestica	MD04G1220200.v1.1 MD12G1240700.v1.1 MD15G1083500.v1.1
prunus_persica	Prupe.1G436000_v2.0.a1 Prupe.6G174800_v2.0.a1 Prupe.6G339200_v2.0.a1
pyrus_communis	pycom08g08260 pycom15g07800 pycom15g07810
rosa_chinensis	RchiOBHm_Chr3g0451551 RchiOBHm_Chr3g0451591 RchiOBHm_Chr3g0451621 RchiOBHm_Chr3g0452131 RchiOBHm_Chr3g0459621
rosa_laevigata	RLG00000025074 RLG00000025077 RLG00000025626 RLG00000029505 RLG00000035382 RLG00000035384
rosa_multiflora	Rmu_co8173672.1_g000001 Rmu_sc0000240.1_g000011 Rmu_sc0000240.1_g000014 Rmu_sc0004924.1_g000012 Rmu_sc0004924.1_g000020 Rmu_sc0004924.1_g000023 Rmu_sc0004924.1_g000025 Rmu_sc0004924.1_g000034 Rmu_sc0004924.1_g000035 Rmu_sc0009360.1_g000006 Rmu_sc0009360.1_g000008 Rmu_sc0009360.1_g000014 Rmu_sc0009360.1_g000047 Rmu_sc0011887.1_g000001 Rmu_sc0015119.1_g000001 Rmu_sc0023706.1_g000002
rosa_roxburghii	Rroxscaffold_164G00436050 Rroxscaffold_164G00436390 Rroxscaffold_164G00436450 Rroxscaffold_164G00436460 Rroxscaffold_4G00317080 Rroxscaffold_4G00317090 Rroxscaffold_6G00420140 Rroxscaffold_6G00428920
rosa_rugosa	Rorug02G0634200 Rorug02G0634500 Rorug02G0634700 Rorug02G0635400 Rorug02G0638500 Rorug03G0036600 Rorug03G0036700
rosa_samantha	Rh1BG103700 Rh1BG103800 Rh3AG040400 Rh3BG037900 Rh3BG038200 Rh3BG041900 Rh3BG097900 Rh3CG036600 Rh3CG040300 Rh3DG037300 Rh3DG037500 Rh3DG041200 Rh3DG099300
rosa_wichuraiana	Rw0G013830 Rw0G017580 Rw0G017600 Rw3G003070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	175
AccB7I	CCANNNNNTGG	1 cut(s)	133
AciI	CCGC	3 cut(s)	5, 88, 105
AcsI	RAATTY	1 cut(s)	217
AfaI	GTAC	1 cut(s)	113
AfiI	CCNNNNNNNGG	1 cut(s)	133
AgsI	TTSAA	3 cut(s)	62, 211, 233
AluBI	AGCT	3 cut(s)	71, 132, 259
AluI	AGCT	3 cut(s)	71, 132, 259
ApeKI	GCWGC	2 cut(s)	68, 152
ApoI	RAATTY	1 cut(s)	217
AspS9I	GGNCC	1 cut(s)	102
AsuC2I	CCSGG	1 cut(s)	100
AsuHPI	GGTGA	2 cut(s)	19, 183
AvaII	GGWCC	1 cut(s)	102
BanII	GRGCYC	1 cut(s)	126
BbvI	GCAGC	2 cut(s)	80, 139
BcnI	CCSGG	1 cut(s)	100
BfaI	CTAG	1 cut(s)	53
BfmI	CTRYAG	1 cut(s)	260
BisI	GCNGC	2 cut(s)	69, 153
BlpI	GCTNAGC	1 cut(s)	72
BlsI	GCNGC	2 cut(s)	70, 154
BmcAI	AGTACT	1 cut(s)	113
Bme1390I	CCNGG	1 cut(s)	100
Bme18I	GGWCC	1 cut(s)	102
BmgT120I	GGNCC	1 cut(s)	102
BmiI	GGNNCC	1 cut(s)	123
BmrFI	CCNGG	1 cut(s)	100
Bpu1102I	GCTNAGC	1 cut(s)	72
BpuMI	CCSGG	1 cut(s)	100
BsaJI	CCNNGG	1 cut(s)	98
BsaWI	WCCGGW	1 cut(s)	160
Bsc4I	CCNNNNNNNGG	1 cut(s)	133
BseDI	CCNNGG	1 cut(s)	98
BseLI	CCNNNNNNNGG	1 cut(s)	133
BseMII	CTCAG	2 cut(s)	86, 164
BseRI	GAGGAG	1 cut(s)	134
BseXI	GCAGC	2 cut(s)	80, 139
Bsh1285I	CGRYCG	1 cut(s)	165
BsiEI	CGRYCG	1 cut(s)	165
BsiSI	CCGG	2 cut(s)	100, 161
BslFI	GGGAC	1 cut(s)	181
BslI	CCNNNNNNNGG	1 cut(s)	133
BsmFI	GGGAC	1 cut(s)	181
Bsp1286I	GDGCHC	1 cut(s)	126
Bsp1720I	GCTNAGC	1 cut(s)	72
BspACI	CCGC	3 cut(s)	5, 88, 105
BspCNI	CTCAG	2 cut(s)	85, 165
BspLI	GGNNCC	1 cut(s)	123
BssECI	CCNNGG	1 cut(s)	98
BstC8I	GCNNGC	1 cut(s)	257
BstDEI	CTNAG	2 cut(s)	72, 173
BstMCI	CGRYCG	1 cut(s)	165
BstMWI	GCNNNNNNNGC	1 cut(s)	94
BstSCI	CCNGG	1 cut(s)	98
BstSFI	CTRYAG	1 cut(s)	260
BstV1I	GCAGC	2 cut(s)	80, 139
BtsIMutI	CAGTG	1 cut(s)	170
Cac8I	GCNNGC	1 cut(s)	257
Cfr13I	GGNCC	1 cut(s)	102
CpoI	CGGWCCG	1 cut(s)	102
Csp6I	GTAC	1 cut(s)	112
CspI	CGGWCCG	1 cut(s)	102
CviJI	RGCY	8 cut(s)	41, 71, 76, 97, 124, 132, 152, 259
CviKI_1	RGCY	8 cut(s)	41, 71, 76, 97, 124, 132, 152, 259
CviQI	GTAC	1 cut(s)	112
DdeI	CTNAG	2 cut(s)	72, 173
DrdI	GACNNNNNNGTC	1 cut(s)	175
DseDI	GACNNNNNNGTC	1 cut(s)	175
EciI	GGCGGA	1 cut(s)	94
Eco24I	GRGCYC	1 cut(s)	126
Eco47I	GGWCC	1 cut(s)	102
EcoT38I	GRGCYC	1 cut(s)	126
FaiI	YATR	5 cut(s)	22, 24, 33, 145, 204
FaqI	GGGAC	1 cut(s)	181
FauI	CCCGC	1 cut(s)	81
Fnu4HI	GCNGC	2 cut(s)	69, 153
FriOI	GRGCYC	1 cut(s)	126
Fsp4HI	GCNGC	2 cut(s)	69, 153
FspBI	CTAG	1 cut(s)	53
GluI	GCNGC	2 cut(s)	69, 153
HapII	CCGG	2 cut(s)	100, 161
HinfI	GANTC	1 cut(s)	188
HpaII	CCGG	2 cut(s)	100, 161
HphI	GGTGA	2 cut(s)	19, 183
Hpy188III	TCNNGA	2 cut(s)	166, 230
HpyAV	CCTTC	2 cut(s)	142, 242
HpyCH4V	TGCA	2 cut(s)	68, 155
HpyF10VI	GCNNNNNNNGC	1 cut(s)	94
HpyF3I	CTNAG	2 cut(s)	72, 173
LmnI	GCTCC	1 cut(s)	121
LpnPI	CCDG	3 cut(s)	113, 140, 174
Lsp1109I	GCAGC	2 cut(s)	80, 139
MaeI	CTAG	1 cut(s)	53
MaeIII	GTNAC	1 cut(s)	11
MboII	GAAGA	2 cut(s)	245, 257
MhlI	GDGCHC	1 cut(s)	126
MluCI	AATT	2 cut(s)	63, 217
MlyI	GAGTC	1 cut(s)	182
MnlI	CCTC	6 cut(s)	39, 39, 49, 112, 130, 168
MspI	CCGG	2 cut(s)	100, 161
MspR9I	CCNGG	1 cut(s)	100
MwoI	GCNNNNNNNGC	1 cut(s)	94
NciI	CCSGG	1 cut(s)	100
NlaIV	GGNNCC	1 cut(s)	123
NmeAIII	GCCGAG	1 cut(s)	133
PflMI	CCANNNNNTGG	1 cut(s)	133
PkrI	GCNGC	2 cut(s)	70, 154
PleI	GAGTC	1 cut(s)	182
PpsI	GAGTC	1 cut(s)	182
PspN4I	GGNNCC	1 cut(s)	123
PspPI	GGNCC	1 cut(s)	102
RsaI	GTAC	1 cut(s)	113
RsaNI	GTAC	1 cut(s)	112
Rsr2I	CGGWCCG	1 cut(s)	102
RsrII	CGGWCCG	1 cut(s)	102
SatI	GCNGC	2 cut(s)	69, 153
Sau96I	GGNCC	1 cut(s)	102
ScaI	AGTACT	1 cut(s)	113
SchI	GAGTC	1 cut(s)	182
ScrFI	CCNGG	1 cut(s)	100
SduI	GDGCHC	1 cut(s)	126
SetI	ASST	5 cut(s)	60, 73, 134, 179, 261
SfcI	CTRYAG	1 cut(s)	260
SinI	GGWCC	1 cut(s)	102
Sse9I	AATT	2 cut(s)	63, 217
SsiI	CCGC	3 cut(s)	5, 88, 105
SspMI	CTAG	1 cut(s)	53
StyD4I	CCNGG	1 cut(s)	98
TaqI	TCGA	1 cut(s)	243
TasI	AATT	2 cut(s)	63, 217
TatI	WGTACW	1 cut(s)	111
TscAI	CASTG	1 cut(s)	177
TseI	GCWGC	2 cut(s)	68, 152
TspRI	CASTG	1 cut(s)	177
Van91I	CCANNNNNTGG	1 cut(s)	133
VpaK11BI	GGWCC	1 cut(s)	102
XapI	RAATTY	1 cut(s)	217
XspI	CTAG	1 cut(s)	53
ZrmI	AGTACT	1 cut(s)	113

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.