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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 939 |
| AccB1I | GGYRCC | 2 cut(s) | 182, 370 |
| AccBSI | CCGCTC | 1 cut(s) | 598 |
| AccI | GTMKAC | 1 cut(s) | 297 |
| AccII | CGCG | 3 cut(s) | 84, 93, 693 |
| AclWI | GGATC | 4 cut(s) | 201, 340, 457, 470 |
| AcoI | YGGCCR | 4 cut(s) | 29, 307, 360, 377 |
| AcsI | RAATTY | 2 cut(s) | 499, 529 |
| AcyI | GRCGYC | 1 cut(s) | 371 |
| AfaI | GTAC | 6 cut(s) | 128, 559, 667, 717, 752, 917 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 34 |
| AgeI | ACCGGT | 1 cut(s) | 521 |
| AgsI | TTSAA | 2 cut(s) | 152, 580 |
| AleI | CACNNNNGTG | 1 cut(s) | 971 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 233, 265 |
| AluBI | AGCT | 2 cut(s) | 763, 880 |
| AluI | AGCT | 2 cut(s) | 763, 880 |
| Alw26I | GTCTC | 1 cut(s) | 311 |
| AlwI | GGATC | 4 cut(s) | 201, 340, 457, 470 |
| AoxI | GGCC | 6 cut(s) | 24, 29, 99, 307, 360, 377 |
| ApeKI | GCWGC | 4 cut(s) | 106, 112, 139, 334 |
| ApoI | RAATTY | 2 cut(s) | 499, 529 |
| AsiGI | ACCGGT | 1 cut(s) | 521 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 248 |
| AspLEI | GCGC | 5 cut(s) | 86, 93, 144, 373, 1019 |
| AspS9I | GGNCC | 3 cut(s) | 25, 405, 889 |
| AsuC2I | CCSGG | 3 cut(s) | 28, 176, 950 |
| AsuHPI | GGTGA | 1 cut(s) | 841 |
| AsuII | TTCGAA | 2 cut(s) | 252, 527 |
| AvaII | GGWCC | 2 cut(s) | 405, 889 |
| BamHI | GGATCC | 1 cut(s) | 462 |
| BanI | GGYRCC | 2 cut(s) | 182, 370 |
| BauI | CACGAG | 1 cut(s) | 356 |
| BbsI | GAAGAC | 1 cut(s) | 524 |
| BbvI | GCAGC | 4 cut(s) | 118, 124, 151, 346 |
| BccI | CCATC | 2 cut(s) | 382, 448 |
| BceAI | ACGGC | 4 cut(s) | 313, 347, 367, 610 |
| BcnI | CCSGG | 3 cut(s) | 28, 176, 950 |
| BcoDI | GTCTC | 1 cut(s) | 311 |
| BfoI | RGCGCY | 2 cut(s) | 374, 1020 |
| BglI | GCCNNNNNGGC | 2 cut(s) | 368, 442 |
| BglII | AGATCT | 1 cut(s) | 154 |
| BmcAI | AGTACT | 1 cut(s) | 667 |
| Bme1390I | CCNGG | 3 cut(s) | 28, 176, 950 |
| Bme18I | GGWCC | 2 cut(s) | 405, 889 |
| BmgT120I | GGNCC | 3 cut(s) | 25, 405, 889 |
| BmiI | GGNNCC | 6 cut(s) | 13, 120, 184, 372, 464, 891 |
| BmrFI | CCNGG | 3 cut(s) | 28, 176, 950 |
| BmrI | ACTGGG | 1 cut(s) | 232 |
| BmuI | ACTGGG | 1 cut(s) | 232 |
| BpiI | GAAGAC | 1 cut(s) | 524 |
| BpmI | CTGGAG | 3 cut(s) | 221, 260, 500 |
| Bpu14I | TTCGAA | 2 cut(s) | 252, 527 |
| BpuMI | CCSGG | 3 cut(s) | 28, 176, 950 |
| BsaAI | YACGTR | 1 cut(s) | 130 |
| BsaHI | GRCGYC | 1 cut(s) | 371 |
| BsaI | GGTCTC | 1 cut(s) | 311 |
| BsaJI | CCNNGG | 1 cut(s) | 374 |
| BsaWI | WCCGGW | 2 cut(s) | 121, 521 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 233, 263, 308, 338, 584, 614 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 34 |
| Bse118I | RCCGGY | 2 cut(s) | 337, 521 |
| Bse1I | ACTGG | 3 cut(s) | 227, 464, 613 |
| BseDI | CCNNGG | 1 cut(s) | 374 |
| BseGI | GGATG | 1 cut(s) | 609 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 34 |
| BseMII | CTCAG | 1 cut(s) | 575 |
| BseNI | ACTGG | 3 cut(s) | 227, 464, 613 |
| BseRI | GAGGAG | 7 cut(s) | 608, 662, 665, 761, 791, 839, 872 |
| BseX3I | CGGCCG | 1 cut(s) | 377 |
| BseXI | GCAGC | 4 cut(s) | 118, 124, 151, 346 |
| BseYI | CCCAGC | 2 cut(s) | 550, 572 |
| Bsh1236I | CGCG | 3 cut(s) | 84, 93, 693 |
| Bsh1285I | CGRYCG | 1 cut(s) | 380 |
| BshFI | GGCC | 6 cut(s) | 26, 31, 101, 309, 362, 379 |
| BshNI | GGYRCC | 2 cut(s) | 182, 370 |
| BshTI | ACCGGT | 1 cut(s) | 521 |
| BsiEI | CGRYCG | 1 cut(s) | 380 |
| BsiSI | CCGG | 7 cut(s) | 28, 116, 122, 176, 338, 522, 950 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 34 |
| BsmAI | GTCTC | 1 cut(s) | 311 |
| BsnI | GGCC | 6 cut(s) | 26, 31, 101, 309, 362, 379 |
| Bso31I | GGTCTC | 1 cut(s) | 311 |
| Bsp119I | TTCGAA | 2 cut(s) | 252, 527 |
| Bsp1407I | TGTACA | 1 cut(s) | 715 |
| Bsp143I | GATC | 4 cut(s) | 154, 193, 345, 462 |
| Bsp68I | TCGCGA | 1 cut(s) | 693 |
| BspANI | GGCC | 6 cut(s) | 26, 31, 101, 309, 362, 379 |
| BspCNI | CTCAG | 1 cut(s) | 574 |
| BspFNI | CGCG | 3 cut(s) | 84, 93, 693 |
| BspLI | GGNNCC | 6 cut(s) | 13, 120, 184, 372, 464, 891 |
| BspPI | GGATC | 4 cut(s) | 201, 340, 457, 470 |
| BspQI | GCTCTTC | 1 cut(s) | 129 |
| BspT104I | TTCGAA | 2 cut(s) | 252, 527 |
| BspT107I | GGYRCC | 2 cut(s) | 182, 370 |
| BspTNI | GGTCTC | 1 cut(s) | 311 |
| BsrBI | CCGCTC | 1 cut(s) | 598 |
| BsrFI | RCCGGY | 2 cut(s) | 337, 521 |
| BsrGI | TGTACA | 1 cut(s) | 715 |
| BsrI | ACTGG | 3 cut(s) | 227, 464, 613 |
| BssAI | RCCGGY | 2 cut(s) | 337, 521 |
| BssECI | CCNNGG | 1 cut(s) | 374 |
| BssMI | GATC | 4 cut(s) | 154, 193, 345, 462 |
| BssNI | GRCGYC | 1 cut(s) | 371 |
| BssSI | CACGAG | 1 cut(s) | 356 |
| Bst2BI | CACGAG | 1 cut(s) | 356 |
| Bst4CI | ACNGT | 2 cut(s) | 670, 711 |
| Bst6I | CTCTTC | 3 cut(s) | 129, 308, 689 |
| BstACI | GRCGYC | 1 cut(s) | 371 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 340 |
| BstAUI | TGTACA | 1 cut(s) | 715 |
| BstBAI | YACGTR | 1 cut(s) | 130 |
| BstBI | TTCGAA | 2 cut(s) | 252, 527 |
| BstC8I | GCNNGC | 3 cut(s) | 33, 695, 702 |
| BstDEI | CTNAG | 3 cut(s) | 561, 894, 990 |
| BstF5I | GGATG | 1 cut(s) | 609 |
| BstFNI | CGCG | 3 cut(s) | 84, 93, 693 |
| BstH2I | RGCGCY | 2 cut(s) | 374, 1020 |
| BstHHI | GCGC | 5 cut(s) | 86, 93, 144, 373, 1019 |
| BstKTI | GATC | 4 cut(s) | 157, 196, 348, 465 |
| BstMAI | GTCTC | 1 cut(s) | 311 |
| BstMBI | GATC | 4 cut(s) | 154, 193, 345, 462 |
| BstMCI | CGRYCG | 1 cut(s) | 380 |
| BstMWI | GCNNNNNNNGC | 9 cut(s) | 32, 83, 90, 112, 334, 340, 368, 379, 442 |
| BstSCI | CCNGG | 3 cut(s) | 26, 174, 948 |
| BstSNI | TACGTA | 1 cut(s) | 130 |
| BstUI | CGCG | 3 cut(s) | 84, 93, 693 |
| BstV1I | GCAGC | 4 cut(s) | 118, 124, 151, 346 |
| BstV2I | GAAGAC | 1 cut(s) | 524 |
| BstX2I | RGATCY | 2 cut(s) | 154, 462 |
| BstYI | RGATCY | 2 cut(s) | 154, 462 |
| BstZI | CGGCCG | 1 cut(s) | 377 |
| BsuRI | GGCC | 6 cut(s) | 26, 31, 101, 309, 362, 379 |
| BtsCI | GGATG | 1 cut(s) | 609 |
| BtsIMutI | CAGTG | 1 cut(s) | 707 |
| BtuMI | TCGCGA | 1 cut(s) | 693 |
| Cac8I | GCNNGC | 3 cut(s) | 33, 695, 702 |
| CfoI | GCGC | 5 cut(s) | 86, 93, 144, 373, 1019 |
| Cfr10I | RCCGGY | 2 cut(s) | 337, 521 |
| Cfr13I | GGNCC | 3 cut(s) | 25, 405, 889 |
| CpoI | CGGWCCG | 1 cut(s) | 405 |
| CseI | GACGC | 2 cut(s) | 82, 361 |
| Csp6I | GTAC | 6 cut(s) | 127, 558, 666, 716, 751, 916 |
| CspAI | ACCGGT | 1 cut(s) | 521 |
| CspI | CGGWCCG | 1 cut(s) | 405 |
| CviAII | CATG | 4 cut(s) | 275, 808, 883, 1022 |
| CviQI | GTAC | 6 cut(s) | 127, 558, 666, 716, 751, 916 |
| DdeI | CTNAG | 3 cut(s) | 561, 894, 990 |
| DinI | GGCGCC | 1 cut(s) | 372 |
| DpnI | GATC | 4 cut(s) | 156, 195, 347, 464 |
| DpnII | GATC | 4 cut(s) | 154, 193, 345, 462 |
| EaeI | YGGCCR | 4 cut(s) | 29, 307, 360, 377 |
| EagI | CGGCCG | 1 cut(s) | 377 |
| Eam1104I | CTCTTC | 3 cut(s) | 129, 308, 689 |
| EarI | CTCTTC | 3 cut(s) | 129, 308, 689 |
| EciI | GGCGGA | 1 cut(s) | 788 |
| EclXI | CGGCCG | 1 cut(s) | 377 |
| Eco105I | TACGTA | 1 cut(s) | 130 |
| Eco147I | AGGCCT | 1 cut(s) | 101 |
| Eco31I | GGTCTC | 1 cut(s) | 311 |
| Eco47I | GGWCC | 2 cut(s) | 405, 889 |
| Eco52I | CGGCCG | 1 cut(s) | 377 |
| EcoO109I | RGGNCCY | 1 cut(s) | 889 |
| EcoRI | GAATTC | 1 cut(s) | 499 |
| EgeI | GGCGCC | 1 cut(s) | 372 |
| EheI | GGCGCC | 1 cut(s) | 372 |
| FaeI | CATG | 4 cut(s) | 278, 811, 886, 1025 |
| FatI | CATG | 4 cut(s) | 274, 807, 882, 1021 |
| FblI | GTMKAC | 1 cut(s) | 297 |
| FokI | GGATG | 1 cut(s) | 616 |
| GlaI | GCGC | 5 cut(s) | 85, 92, 143, 372, 1018 |
| GsaI | CCCAGC | 2 cut(s) | 554, 576 |
| GsuI | CTGGAG | 3 cut(s) | 221, 260, 500 |
| HaeII | RGCGCY | 2 cut(s) | 374, 1020 |
| HaeIII | GGCC | 6 cut(s) | 26, 31, 101, 309, 362, 379 |
| HapII | CCGG | 7 cut(s) | 28, 116, 122, 176, 338, 522, 950 |
| HgaI | GACGC | 2 cut(s) | 82, 361 |
| HhaI | GCGC | 5 cut(s) | 86, 93, 144, 373, 1019 |
| Hin1I | GRCGYC | 1 cut(s) | 371 |
| Hin1II | CATG | 4 cut(s) | 278, 811, 886, 1025 |
| Hin6I | GCGC | 5 cut(s) | 84, 91, 142, 371, 1017 |
| HinP1I | GCGC | 5 cut(s) | 84, 91, 142, 371, 1017 |
| HinfI | GANTC | 6 cut(s) | 203, 235, 279, 400, 637, 850 |
| HpaII | CCGG | 7 cut(s) | 28, 116, 122, 176, 338, 522, 950 |
| HphI | GGTGA | 1 cut(s) | 841 |
| Hpy166II | GTNNAC | 4 cut(s) | 298, 558, 676, 753 |
| Hpy188I | TCNGA | 3 cut(s) | 505, 564, 642 |
| Hpy8I | GTNNAC | 4 cut(s) | 298, 558, 676, 753 |
| Hpy99I | CGWCG | 6 cut(s) | 46, 328, 334, 355, 368, 388 |
| HpyAV | CCTTC | 8 cut(s) | 157, 158, 238, 254, 485, 562, 583, 790 |
| HpyCH4III | ACNGT | 2 cut(s) | 670, 711 |
| HpyCH4IV | ACGT | 1 cut(s) | 129 |
| HpyCH4V | TGCA | 1 cut(s) | 955 |
| HpyF10VI | GCNNNNNNNGC | 9 cut(s) | 32, 83, 90, 112, 334, 340, 368, 379, 442 |
| HpyF3I | CTNAG | 3 cut(s) | 561, 894, 990 |
| HpySE526I | ACGT | 1 cut(s) | 129 |
| Hsp92I | GRCGYC | 1 cut(s) | 371 |
| Hsp92II | CATG | 4 cut(s) | 278, 811, 886, 1025 |
| HspAI | GCGC | 5 cut(s) | 84, 91, 142, 371, 1017 |
| KasI | GGCGCC | 1 cut(s) | 370 |
| Kzo9I | GATC | 4 cut(s) | 154, 193, 345, 462 |
| LguI | GCTCTTC | 1 cut(s) | 129 |
| LmnI | GCTCC | 3 cut(s) | 11, 481, 595 |
| Lsp1109I | GCAGC | 4 cut(s) | 118, 124, 151, 346 |
| MaeII | ACGT | 1 cut(s) | 129 |
| MalI | GATC | 4 cut(s) | 156, 195, 347, 464 |
| MbiI | CCGCTC | 1 cut(s) | 598 |
| MboI | GATC | 4 cut(s) | 154, 193, 345, 462 |
| MflI | RGATCY | 2 cut(s) | 154, 462 |
| MluCI | AATT | 4 cut(s) | 207, 499, 529, 719 |
| Mly113I | GGCGCC | 1 cut(s) | 371 |
| MlyI | GAGTC | 1 cut(s) | 212 |
| MroXI | GAANNNNTTC | 1 cut(s) | 248 |
| MslI | CAYNNNNRTG | 1 cut(s) | 971 |
| MspA1I | CMGCKG | 1 cut(s) | 35 |
| MspI | CCGG | 7 cut(s) | 28, 116, 122, 176, 338, 522, 950 |
| MspR9I | CCNGG | 3 cut(s) | 28, 176, 950 |
| MvnI | CGCG | 3 cut(s) | 84, 93, 693 |
| MwoI | GCNNNNNNNGC | 9 cut(s) | 32, 83, 90, 112, 334, 340, 368, 379, 442 |
| NarI | GGCGCC | 1 cut(s) | 371 |
| NciI | CCSGG | 3 cut(s) | 28, 176, 950 |
| NdeII | GATC | 4 cut(s) | 154, 193, 345, 462 |
| NlaIII | CATG | 4 cut(s) | 278, 811, 886, 1025 |
| NlaIV | GGNNCC | 6 cut(s) | 13, 120, 184, 372, 464, 891 |
| NmeAIII | GCCGAG | 1 cut(s) | 355 |
| NruI | TCGCGA | 1 cut(s) | 693 |
| NspV | TTCGAA | 2 cut(s) | 252, 527 |
| OliI | CACNNNNGTG | 1 cut(s) | 971 |
| PceI | AGGCCT | 1 cut(s) | 101 |
| PciSI | GCTCTTC | 1 cut(s) | 129 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 320, 363 |
| PdmI | GAANNNNTTC | 1 cut(s) | 248 |
| PfeI | GAWTC | 5 cut(s) | 235, 279, 400, 637, 850 |
| PflFI | GACNNNGTC | 1 cut(s) | 322 |
| PinAI | ACCGGT | 1 cut(s) | 521 |
| PleI | GAGTC | 1 cut(s) | 211 |
| PluTI | GGCGCC | 1 cut(s) | 374 |
| PpsI | GAGTC | 1 cut(s) | 211 |
| Ppu21I | YACGTR | 1 cut(s) | 130 |
| PpuMI | RGGWCCY | 1 cut(s) | 889 |
| PsiI | TTATAA | 1 cut(s) | 939 |
| Psp5II | RGGWCCY | 1 cut(s) | 889 |
| PspFI | CCCAGC | 2 cut(s) | 550, 572 |
| PspN4I | GGNNCC | 6 cut(s) | 13, 120, 184, 372, 464, 891 |
| PspPI | GGNCC | 3 cut(s) | 25, 405, 889 |
| PspPPI | RGGWCCY | 1 cut(s) | 889 |
| PsuI | RGATCY | 2 cut(s) | 154, 462 |
| PsyI | GACNNNGTC | 1 cut(s) | 322 |
| RruI | TCGCGA | 1 cut(s) | 693 |
| RsaI | GTAC | 6 cut(s) | 128, 559, 667, 717, 752, 917 |
| RsaNI | GTAC | 6 cut(s) | 127, 558, 666, 716, 751, 916 |
| RseI | CAYNNNNRTG | 1 cut(s) | 971 |
| Rsr2I | CGGWCCG | 1 cut(s) | 405 |
| RsrII | CGGWCCG | 1 cut(s) | 405 |
| SapI | GCTCTTC | 1 cut(s) | 129 |
| Sau3AI | GATC | 4 cut(s) | 154, 193, 345, 462 |
| Sau96I | GGNCC | 3 cut(s) | 25, 405, 889 |
| ScaI | AGTACT | 1 cut(s) | 667 |
| SchI | GAGTC | 1 cut(s) | 212 |
| ScrFI | CCNGG | 3 cut(s) | 28, 176, 950 |
| SetI | ASST | 8 cut(s) | 132, 150, 303, 323, 744, 765, 831, 882 |
| SfoI | GGCGCC | 1 cut(s) | 372 |
| SfuI | TTCGAA | 2 cut(s) | 252, 527 |
| SinI | GGWCC | 2 cut(s) | 405, 889 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 971 |
| SnaBI | TACGTA | 1 cut(s) | 130 |
| Sse9I | AATT | 4 cut(s) | 207, 499, 529, 719 |
| SseBI | AGGCCT | 1 cut(s) | 101 |
| SspDI | GGCGCC | 1 cut(s) | 370 |
| StuI | AGGCCT | 1 cut(s) | 101 |
| StyD4I | CCNGG | 3 cut(s) | 26, 174, 948 |
| TaaI | ACNGT | 2 cut(s) | 670, 711 |
| TaiI | ACGT | 1 cut(s) | 132 |
| TaqI | TCGA | 7 cut(s) | 233, 252, 386, 527, 723, 744, 853 |
| TaqII | GACCGA | 1 cut(s) | 393 |
| TasI | AATT | 4 cut(s) | 207, 499, 529, 719 |
| TatI | WGTACW | 5 cut(s) | 557, 665, 715, 750, 915 |
| TauI | GCSGC | 8 cut(s) | 38, 41, 56, 112, 170, 382, 538, 700 |
| TfiI | GAWTC | 5 cut(s) | 235, 279, 400, 637, 850 |
| TscAI | CASTG | 1 cut(s) | 714 |
| TseI | GCWGC | 4 cut(s) | 106, 112, 139, 334 |
| TspDTI | ATGAA | 7 cut(s) | 263, 464, 602, 620, 650, 796, 998 |
| TspGWI | ACGGA | 4 cut(s) | 59, 329, 397, 1026 |
| TspRI | CASTG | 1 cut(s) | 714 |
| Tth111I | GACNNNGTC | 1 cut(s) | 322 |
| VpaK11BI | GGWCC | 2 cut(s) | 405, 889 |
| XapI | RAATTY | 2 cut(s) | 499, 529 |
| XmiI | GTMKAC | 1 cut(s) | 297 |
| XmnI | GAANNNNTTC | 1 cut(s) | 248 |
| ZrmI | AGTACT | 1 cut(s) | 667 |