Rorug03G0036700

No description available

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
Physical Location & Seq
Forward (+)
2938453 .. 2939968
1516 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0036700.1

Sequence Viewer

Length: 1035 bp
ATGAGGAAAGGAGCCAAGAGAAAGGCCCGGCCAGCGGCGGCGACGGAGGAAGCCGCCACCAAGCCCAAAGCCACCGCCACACGCGCCAAGCGCGTCAAGGCCTCGCAGCCGCAGCCGGAACCGGAGTACGTAGAAGAGCAGCGCAACCTTCAAGATCTATGGAAGGCGGCGTTCCCGGTAGGCACCGAATGGGATCGGCTGGAGTCAATTTACCAATACGACTGGGATTTCTCGAATCTGGAGAAGGAGTTCGAAGAAGAAGGAGGGAAGTTTCATGGAATCGGGAACAACAAAGTCTACCTCTTCGGCCAGACGGAGACCTCGTCGCCGTCGCAGCCGGTGCTGATCCCGACGCTCGTGGCCGTCGTGGCGCCTCGGCCGCCGTCGATGGAGATAGGGATTCGGTCCGTCCAGAGAGAAGATAAGGAGATAGTGCCGATGAGGCAGATGAAGATGGACTGGATCCCTTACATTCCTCTGGAGCAGAGAGAAGGGTGGAATTCCGAAAGAGCGAAGAAGACCGGTTCGAATTTGCCGCAGATTTTTGTGCTGGGGTGTACTCAGAGGAAGGCTGGGTTGAAGCAGATGAAGGAGGAGCGGTGGATGAAGTTCCAGTATTGTATGCCGTATTTGATGAATCCGAATGAGGAGGAGAAAGAGCAGAGTACTGTGGTGGACATACTCTTCCCTCGCGAGCCGCAAGCACCACTGTTTGTACAATTCGATTGGGAGTTTGATGAGGTCGAGGAGTACACCGATGAGCTGATAAAGGCGGAGGAGTTGAGTGAGGATAAGAAGGAGGCGTTCATGGAGTTTGTGAGAGAGGAGGTGAAGAAAGCGAAGAAGAAGATTCGAGAGGAGAGGGAAGCGAAGAAGAAGCTCATGGAGGACCCTAAGTATCAGGAGGCGAAAATGTACTATGAGAATATGAGGCTTTATAAGATTTACCCGGTGCAAACGCCGAACACTCCTGTGATAGAGATGAAGTCTAAGTATATCAACTACTACTACGGAAGCGCCCATGAGATTATTTGA

Protein Analysis

344

Amino Acids

40.56

Weight (kDa)

5.86

Isoelectric Point (pI)

59.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0000661)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G10010
fragaria_vesca FvH4_6g03222 FvH4_6g03560 FvH4_6g03561 FvH4_6g03563 FvH4_6g03590 FvH4_6g03590 FvH4_6g09260
malus_domestica MD04G1220200.v1.1 MD12G1240700.v1.1 MD15G1083500.v1.1
prunus_persica Prupe.1G436000_v2.0.a1 Prupe.6G174800_v2.0.a1 Prupe.6G339200_v2.0.a1
pyrus_communis pycom08g08260 pycom15g07800 pycom15g07810
rosa_chinensis RchiOBHm_Chr3g0451551 RchiOBHm_Chr3g0451591 RchiOBHm_Chr3g0451621 RchiOBHm_Chr3g0452131 RchiOBHm_Chr3g0459621
rosa_laevigata RLG00000025074 RLG00000025077 RLG00000025626 RLG00000029505 RLG00000035382 RLG00000035384
rosa_multiflora Rmu_co8173672.1_g000001 Rmu_sc0000240.1_g000011 Rmu_sc0000240.1_g000014 Rmu_sc0004924.1_g000012 Rmu_sc0004924.1_g000020 Rmu_sc0004924.1_g000023 Rmu_sc0004924.1_g000025 Rmu_sc0004924.1_g000034 Rmu_sc0004924.1_g000035 Rmu_sc0009360.1_g000006 Rmu_sc0009360.1_g000008 Rmu_sc0009360.1_g000014 Rmu_sc0009360.1_g000047 Rmu_sc0011887.1_g000001 Rmu_sc0015119.1_g000001 Rmu_sc0023706.1_g000002
rosa_roxburghii Rroxscaffold_164G00436050 Rroxscaffold_164G00436390 Rroxscaffold_164G00436450 Rroxscaffold_164G00436460 Rroxscaffold_4G00317080 Rroxscaffold_4G00317090 Rroxscaffold_6G00420140 Rroxscaffold_6G00428920
rosa_rugosa Rorug02G0634200 Rorug02G0634500 Rorug02G0634700 Rorug02G0635400 Rorug02G0638500 Rorug03G0036600 Rorug03G0036700
rosa_samantha Rh1BG103700 Rh1BG103800 Rh3AG040400 Rh3BG037900 Rh3BG038200 Rh3BG041900 Rh3BG097900 Rh3CG036600 Rh3CG040300 Rh3DG037300 Rh3DG037500 Rh3DG041200 Rh3DG099300
rosa_wichuraiana Rw0G013830 Rw0G017580 Rw0G017600 Rw3G003070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 939
AccB1I GGYRCC 2 cut(s) 182, 370
AccBSI CCGCTC 1 cut(s) 598
AccI GTMKAC 1 cut(s) 297
AccII CGCG 3 cut(s) 84, 93, 693
AclWI GGATC 4 cut(s) 201, 340, 457, 470
AcoI YGGCCR 4 cut(s) 29, 307, 360, 377
AcsI RAATTY 2 cut(s) 499, 529
AcyI GRCGYC 1 cut(s) 371
AfaI GTAC 6 cut(s) 128, 559, 667, 717, 752, 917
AfiI CCNNNNNNNGG 1 cut(s) 34
AgeI ACCGGT 1 cut(s) 521
AgsI TTSAA 2 cut(s) 152, 580
AleI CACNNNNGTG 1 cut(s) 971
AloI GAACNNNNNNTCC 2 cut(s) 233, 265
AluBI AGCT 2 cut(s) 763, 880
AluI AGCT 2 cut(s) 763, 880
Alw26I GTCTC 1 cut(s) 311
AlwI GGATC 4 cut(s) 201, 340, 457, 470
AoxI GGCC 6 cut(s) 24, 29, 99, 307, 360, 377
ApeKI GCWGC 4 cut(s) 106, 112, 139, 334
ApoI RAATTY 2 cut(s) 499, 529
AsiGI ACCGGT 1 cut(s) 521
Asp700I GAANNNNTTC 1 cut(s) 248
AspLEI GCGC 5 cut(s) 86, 93, 144, 373, 1019
AspS9I GGNCC 3 cut(s) 25, 405, 889
AsuC2I CCSGG 3 cut(s) 28, 176, 950
AsuHPI GGTGA 1 cut(s) 841
AsuII TTCGAA 2 cut(s) 252, 527
AvaII GGWCC 2 cut(s) 405, 889
BamHI GGATCC 1 cut(s) 462
BanI GGYRCC 2 cut(s) 182, 370
BauI CACGAG 1 cut(s) 356
BbsI GAAGAC 1 cut(s) 524
BbvI GCAGC 4 cut(s) 118, 124, 151, 346
BccI CCATC 2 cut(s) 382, 448
BceAI ACGGC 4 cut(s) 313, 347, 367, 610
BcnI CCSGG 3 cut(s) 28, 176, 950
BcoDI GTCTC 1 cut(s) 311
BfoI RGCGCY 2 cut(s) 374, 1020
BglI GCCNNNNNGGC 2 cut(s) 368, 442
BglII AGATCT 1 cut(s) 154
BmcAI AGTACT 1 cut(s) 667
Bme1390I CCNGG 3 cut(s) 28, 176, 950
Bme18I GGWCC 2 cut(s) 405, 889
BmgT120I GGNCC 3 cut(s) 25, 405, 889
BmiI GGNNCC 6 cut(s) 13, 120, 184, 372, 464, 891
BmrFI CCNGG 3 cut(s) 28, 176, 950
BmrI ACTGGG 1 cut(s) 232
BmuI ACTGGG 1 cut(s) 232
BpiI GAAGAC 1 cut(s) 524
BpmI CTGGAG 3 cut(s) 221, 260, 500
Bpu14I TTCGAA 2 cut(s) 252, 527
BpuMI CCSGG 3 cut(s) 28, 176, 950
BsaAI YACGTR 1 cut(s) 130
BsaHI GRCGYC 1 cut(s) 371
BsaI GGTCTC 1 cut(s) 311
BsaJI CCNNGG 1 cut(s) 374
BsaWI WCCGGW 2 cut(s) 121, 521
BsaXI ACNNNNNCTCC 6 cut(s) 233, 263, 308, 338, 584, 614
Bsc4I CCNNNNNNNGG 1 cut(s) 34
Bse118I RCCGGY 2 cut(s) 337, 521
Bse1I ACTGG 3 cut(s) 227, 464, 613
BseDI CCNNGG 1 cut(s) 374
BseGI GGATG 1 cut(s) 609
BseLI CCNNNNNNNGG 1 cut(s) 34
BseMII CTCAG 1 cut(s) 575
BseNI ACTGG 3 cut(s) 227, 464, 613
BseRI GAGGAG 7 cut(s) 608, 662, 665, 761, 791, 839, 872
BseX3I CGGCCG 1 cut(s) 377
BseXI GCAGC 4 cut(s) 118, 124, 151, 346
BseYI CCCAGC 2 cut(s) 550, 572
Bsh1236I CGCG 3 cut(s) 84, 93, 693
Bsh1285I CGRYCG 1 cut(s) 380
BshFI GGCC 6 cut(s) 26, 31, 101, 309, 362, 379
BshNI GGYRCC 2 cut(s) 182, 370
BshTI ACCGGT 1 cut(s) 521
BsiEI CGRYCG 1 cut(s) 380
BsiSI CCGG 7 cut(s) 28, 116, 122, 176, 338, 522, 950
BslI CCNNNNNNNGG 1 cut(s) 34
BsmAI GTCTC 1 cut(s) 311
BsnI GGCC 6 cut(s) 26, 31, 101, 309, 362, 379
Bso31I GGTCTC 1 cut(s) 311
Bsp119I TTCGAA 2 cut(s) 252, 527
Bsp1407I TGTACA 1 cut(s) 715
Bsp143I GATC 4 cut(s) 154, 193, 345, 462
Bsp68I TCGCGA 1 cut(s) 693
BspANI GGCC 6 cut(s) 26, 31, 101, 309, 362, 379
BspCNI CTCAG 1 cut(s) 574
BspFNI CGCG 3 cut(s) 84, 93, 693
BspLI GGNNCC 6 cut(s) 13, 120, 184, 372, 464, 891
BspPI GGATC 4 cut(s) 201, 340, 457, 470
BspQI GCTCTTC 1 cut(s) 129
BspT104I TTCGAA 2 cut(s) 252, 527
BspT107I GGYRCC 2 cut(s) 182, 370
BspTNI GGTCTC 1 cut(s) 311
BsrBI CCGCTC 1 cut(s) 598
BsrFI RCCGGY 2 cut(s) 337, 521
BsrGI TGTACA 1 cut(s) 715
BsrI ACTGG 3 cut(s) 227, 464, 613
BssAI RCCGGY 2 cut(s) 337, 521
BssECI CCNNGG 1 cut(s) 374
BssMI GATC 4 cut(s) 154, 193, 345, 462
BssNI GRCGYC 1 cut(s) 371
BssSI CACGAG 1 cut(s) 356
Bst2BI CACGAG 1 cut(s) 356
Bst4CI ACNGT 2 cut(s) 670, 711
Bst6I CTCTTC 3 cut(s) 129, 308, 689
BstACI GRCGYC 1 cut(s) 371
BstAPI GCANNNNNTGC 1 cut(s) 340
BstAUI TGTACA 1 cut(s) 715
BstBAI YACGTR 1 cut(s) 130
BstBI TTCGAA 2 cut(s) 252, 527
BstC8I GCNNGC 3 cut(s) 33, 695, 702
BstDEI CTNAG 3 cut(s) 561, 894, 990
BstF5I GGATG 1 cut(s) 609
BstFNI CGCG 3 cut(s) 84, 93, 693
BstH2I RGCGCY 2 cut(s) 374, 1020
BstHHI GCGC 5 cut(s) 86, 93, 144, 373, 1019
BstKTI GATC 4 cut(s) 157, 196, 348, 465
BstMAI GTCTC 1 cut(s) 311
BstMBI GATC 4 cut(s) 154, 193, 345, 462
BstMCI CGRYCG 1 cut(s) 380
BstMWI GCNNNNNNNGC 9 cut(s) 32, 83, 90, 112, 334, 340, 368, 379, 442
BstSCI CCNGG 3 cut(s) 26, 174, 948
BstSNI TACGTA 1 cut(s) 130
BstUI CGCG 3 cut(s) 84, 93, 693
BstV1I GCAGC 4 cut(s) 118, 124, 151, 346
BstV2I GAAGAC 1 cut(s) 524
BstX2I RGATCY 2 cut(s) 154, 462
BstYI RGATCY 2 cut(s) 154, 462
BstZI CGGCCG 1 cut(s) 377
BsuRI GGCC 6 cut(s) 26, 31, 101, 309, 362, 379
BtsCI GGATG 1 cut(s) 609
BtsIMutI CAGTG 1 cut(s) 707
BtuMI TCGCGA 1 cut(s) 693
Cac8I GCNNGC 3 cut(s) 33, 695, 702
CfoI GCGC 5 cut(s) 86, 93, 144, 373, 1019
Cfr10I RCCGGY 2 cut(s) 337, 521
Cfr13I GGNCC 3 cut(s) 25, 405, 889
CpoI CGGWCCG 1 cut(s) 405
CseI GACGC 2 cut(s) 82, 361
Csp6I GTAC 6 cut(s) 127, 558, 666, 716, 751, 916
CspAI ACCGGT 1 cut(s) 521
CspI CGGWCCG 1 cut(s) 405
CviAII CATG 4 cut(s) 275, 808, 883, 1022
CviQI GTAC 6 cut(s) 127, 558, 666, 716, 751, 916
DdeI CTNAG 3 cut(s) 561, 894, 990
DinI GGCGCC 1 cut(s) 372
DpnI GATC 4 cut(s) 156, 195, 347, 464
DpnII GATC 4 cut(s) 154, 193, 345, 462
EaeI YGGCCR 4 cut(s) 29, 307, 360, 377
EagI CGGCCG 1 cut(s) 377
Eam1104I CTCTTC 3 cut(s) 129, 308, 689
EarI CTCTTC 3 cut(s) 129, 308, 689
EciI GGCGGA 1 cut(s) 788
EclXI CGGCCG 1 cut(s) 377
Eco105I TACGTA 1 cut(s) 130
Eco147I AGGCCT 1 cut(s) 101
Eco31I GGTCTC 1 cut(s) 311
Eco47I GGWCC 2 cut(s) 405, 889
Eco52I CGGCCG 1 cut(s) 377
EcoO109I RGGNCCY 1 cut(s) 889
EcoRI GAATTC 1 cut(s) 499
EgeI GGCGCC 1 cut(s) 372
EheI GGCGCC 1 cut(s) 372
FaeI CATG 4 cut(s) 278, 811, 886, 1025
FatI CATG 4 cut(s) 274, 807, 882, 1021
FblI GTMKAC 1 cut(s) 297
FokI GGATG 1 cut(s) 616
GlaI GCGC 5 cut(s) 85, 92, 143, 372, 1018
GsaI CCCAGC 2 cut(s) 554, 576
GsuI CTGGAG 3 cut(s) 221, 260, 500
HaeII RGCGCY 2 cut(s) 374, 1020
HaeIII GGCC 6 cut(s) 26, 31, 101, 309, 362, 379
HapII CCGG 7 cut(s) 28, 116, 122, 176, 338, 522, 950
HgaI GACGC 2 cut(s) 82, 361
HhaI GCGC 5 cut(s) 86, 93, 144, 373, 1019
Hin1I GRCGYC 1 cut(s) 371
Hin1II CATG 4 cut(s) 278, 811, 886, 1025
Hin6I GCGC 5 cut(s) 84, 91, 142, 371, 1017
HinP1I GCGC 5 cut(s) 84, 91, 142, 371, 1017
HinfI GANTC 6 cut(s) 203, 235, 279, 400, 637, 850
HpaII CCGG 7 cut(s) 28, 116, 122, 176, 338, 522, 950
HphI GGTGA 1 cut(s) 841
Hpy166II GTNNAC 4 cut(s) 298, 558, 676, 753
Hpy188I TCNGA 3 cut(s) 505, 564, 642
Hpy8I GTNNAC 4 cut(s) 298, 558, 676, 753
Hpy99I CGWCG 6 cut(s) 46, 328, 334, 355, 368, 388
HpyAV CCTTC 8 cut(s) 157, 158, 238, 254, 485, 562, 583, 790
HpyCH4III ACNGT 2 cut(s) 670, 711
HpyCH4IV ACGT 1 cut(s) 129
HpyCH4V TGCA 1 cut(s) 955
HpyF10VI GCNNNNNNNGC 9 cut(s) 32, 83, 90, 112, 334, 340, 368, 379, 442
HpyF3I CTNAG 3 cut(s) 561, 894, 990
HpySE526I ACGT 1 cut(s) 129
Hsp92I GRCGYC 1 cut(s) 371
Hsp92II CATG 4 cut(s) 278, 811, 886, 1025
HspAI GCGC 5 cut(s) 84, 91, 142, 371, 1017
KasI GGCGCC 1 cut(s) 370
Kzo9I GATC 4 cut(s) 154, 193, 345, 462
LguI GCTCTTC 1 cut(s) 129
LmnI GCTCC 3 cut(s) 11, 481, 595
Lsp1109I GCAGC 4 cut(s) 118, 124, 151, 346
MaeII ACGT 1 cut(s) 129
MalI GATC 4 cut(s) 156, 195, 347, 464
MbiI CCGCTC 1 cut(s) 598
MboI GATC 4 cut(s) 154, 193, 345, 462
MflI RGATCY 2 cut(s) 154, 462
MluCI AATT 4 cut(s) 207, 499, 529, 719
Mly113I GGCGCC 1 cut(s) 371
MlyI GAGTC 1 cut(s) 212
MroXI GAANNNNTTC 1 cut(s) 248
MslI CAYNNNNRTG 1 cut(s) 971
MspA1I CMGCKG 1 cut(s) 35
MspI CCGG 7 cut(s) 28, 116, 122, 176, 338, 522, 950
MspR9I CCNGG 3 cut(s) 28, 176, 950
MvnI CGCG 3 cut(s) 84, 93, 693
MwoI GCNNNNNNNGC 9 cut(s) 32, 83, 90, 112, 334, 340, 368, 379, 442
NarI GGCGCC 1 cut(s) 371
NciI CCSGG 3 cut(s) 28, 176, 950
NdeII GATC 4 cut(s) 154, 193, 345, 462
NlaIII CATG 4 cut(s) 278, 811, 886, 1025
NlaIV GGNNCC 6 cut(s) 13, 120, 184, 372, 464, 891
NmeAIII GCCGAG 1 cut(s) 355
NruI TCGCGA 1 cut(s) 693
NspV TTCGAA 2 cut(s) 252, 527
OliI CACNNNNGTG 1 cut(s) 971
PceI AGGCCT 1 cut(s) 101
PciSI GCTCTTC 1 cut(s) 129
PcsI WCGNNNNNNNCGW 2 cut(s) 320, 363
PdmI GAANNNNTTC 1 cut(s) 248
PfeI GAWTC 5 cut(s) 235, 279, 400, 637, 850
PflFI GACNNNGTC 1 cut(s) 322
PinAI ACCGGT 1 cut(s) 521
PleI GAGTC 1 cut(s) 211
PluTI GGCGCC 1 cut(s) 374
PpsI GAGTC 1 cut(s) 211
Ppu21I YACGTR 1 cut(s) 130
PpuMI RGGWCCY 1 cut(s) 889
PsiI TTATAA 1 cut(s) 939
Psp5II RGGWCCY 1 cut(s) 889
PspFI CCCAGC 2 cut(s) 550, 572
PspN4I GGNNCC 6 cut(s) 13, 120, 184, 372, 464, 891
PspPI GGNCC 3 cut(s) 25, 405, 889
PspPPI RGGWCCY 1 cut(s) 889
PsuI RGATCY 2 cut(s) 154, 462
PsyI GACNNNGTC 1 cut(s) 322
RruI TCGCGA 1 cut(s) 693
RsaI GTAC 6 cut(s) 128, 559, 667, 717, 752, 917
RsaNI GTAC 6 cut(s) 127, 558, 666, 716, 751, 916
RseI CAYNNNNRTG 1 cut(s) 971
Rsr2I CGGWCCG 1 cut(s) 405
RsrII CGGWCCG 1 cut(s) 405
SapI GCTCTTC 1 cut(s) 129
Sau3AI GATC 4 cut(s) 154, 193, 345, 462
Sau96I GGNCC 3 cut(s) 25, 405, 889
ScaI AGTACT 1 cut(s) 667
SchI GAGTC 1 cut(s) 212
ScrFI CCNGG 3 cut(s) 28, 176, 950
SetI ASST 8 cut(s) 132, 150, 303, 323, 744, 765, 831, 882
SfoI GGCGCC 1 cut(s) 372
SfuI TTCGAA 2 cut(s) 252, 527
SinI GGWCC 2 cut(s) 405, 889
SmiMI CAYNNNNRTG 1 cut(s) 971
SnaBI TACGTA 1 cut(s) 130
Sse9I AATT 4 cut(s) 207, 499, 529, 719
SseBI AGGCCT 1 cut(s) 101
SspDI GGCGCC 1 cut(s) 370
StuI AGGCCT 1 cut(s) 101
StyD4I CCNGG 3 cut(s) 26, 174, 948
TaaI ACNGT 2 cut(s) 670, 711
TaiI ACGT 1 cut(s) 132
TaqI TCGA 7 cut(s) 233, 252, 386, 527, 723, 744, 853
TaqII GACCGA 1 cut(s) 393
TasI AATT 4 cut(s) 207, 499, 529, 719
TatI WGTACW 5 cut(s) 557, 665, 715, 750, 915
TauI GCSGC 8 cut(s) 38, 41, 56, 112, 170, 382, 538, 700
TfiI GAWTC 5 cut(s) 235, 279, 400, 637, 850
TscAI CASTG 1 cut(s) 714
TseI GCWGC 4 cut(s) 106, 112, 139, 334
TspDTI ATGAA 7 cut(s) 263, 464, 602, 620, 650, 796, 998
TspGWI ACGGA 4 cut(s) 59, 329, 397, 1026
TspRI CASTG 1 cut(s) 714
Tth111I GACNNNGTC 1 cut(s) 322
VpaK11BI GGWCC 2 cut(s) 405, 889
XapI RAATTY 2 cut(s) 499, 529
XmiI GTMKAC 1 cut(s) 297
XmnI GAANNNNTTC 1 cut(s) 248
ZrmI AGTACT 1 cut(s) 667
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.