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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 909 |
| AccII | CGCG | 1 cut(s) | 699 |
| AccIII | TCCGGA | 1 cut(s) | 514 |
| AciI | CCGC | 2 cut(s) | 85, 984 |
| AclWI | GGATC | 1 cut(s) | 669 |
| AcoI | YGGCCR | 1 cut(s) | 387 |
| AcsI | RAATTY | 3 cut(s) | 224, 833, 965 |
| AcuI | CTGAAG | 1 cut(s) | 378 |
| AcyI | GRCGYC | 1 cut(s) | 531 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 154, 382 |
| AgsI | TTSAA | 6 cut(s) | 229, 607, 616, 641, 781, 893 |
| AjnI | CCWGG | 1 cut(s) | 792 |
| AluBI | AGCT | 5 cut(s) | 163, 277, 354, 542, 866 |
| AluI | AGCT | 5 cut(s) | 163, 277, 354, 542, 866 |
| Alw21I | GWGCWC | 1 cut(s) | 219 |
| Alw26I | GTCTC | 1 cut(s) | 522 |
| Alw44I | GTGCAC | 1 cut(s) | 215 |
| AlwI | GGATC | 1 cut(s) | 669 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 377 |
| Ama87I | CYCGRG | 2 cut(s) | 104, 110 |
| Aor13HI | TCCGGA | 1 cut(s) | 514 |
| AoxI | GGCC | 3 cut(s) | 45, 387, 407 |
| ApaLI | GTGCAC | 1 cut(s) | 215 |
| ApeKI | GCWGC | 3 cut(s) | 173, 599, 863 |
| ApoI | RAATTY | 3 cut(s) | 224, 833, 965 |
| AspLEI | GCGC | 1 cut(s) | 699 |
| AspS9I | GGNCC | 1 cut(s) | 1000 |
| AsuC2I | CCSGG | 2 cut(s) | 137, 406 |
| AsuHPI | GGTGA | 3 cut(s) | 232, 390, 467 |
| AvaI | CYCGRG | 2 cut(s) | 104, 110 |
| AvaII | GGWCC | 1 cut(s) | 1000 |
| BaeGI | GKGCMC | 1 cut(s) | 219 |
| BalI | TGGCCA | 1 cut(s) | 389 |
| BanII | GRGCYC | 4 cut(s) | 105, 111, 117, 147 |
| Bbv12I | GWGCWC | 1 cut(s) | 219 |
| BbvI | GCAGC | 3 cut(s) | 160, 586, 875 |
| BccI | CCATC | 4 cut(s) | 28, 288, 701, 731 |
| BciT130I | CCWGG | 1 cut(s) | 794 |
| BcnI | CCSGG | 2 cut(s) | 137, 406 |
| BcoDI | GTCTC | 1 cut(s) | 522 |
| BfmI | CTRYAG | 1 cut(s) | 60 |
| BisI | GCNGC | 3 cut(s) | 174, 600, 864 |
| BlsI | GCNGC | 3 cut(s) | 175, 601, 865 |
| Bme1390I | CCNGG | 3 cut(s) | 137, 406, 794 |
| Bme18I | GGWCC | 1 cut(s) | 1000 |
| BmeT110I | CYCGRG | 2 cut(s) | 104, 110 |
| BmgT120I | GGNCC | 1 cut(s) | 1000 |
| BmiI | GGNNCC | 3 cut(s) | 144, 501, 628 |
| BmrFI | CCNGG | 3 cut(s) | 137, 406, 794 |
| BmsI | GCATC | 2 cut(s) | 435, 832 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 261, 293 |
| BpmI | CTGGAG | 3 cut(s) | 744, 852, 915 |
| BpuEI | CTTGAG | 1 cut(s) | 549 |
| BpuMI | CCSGG | 2 cut(s) | 137, 406 |
| BsaHI | GRCGYC | 1 cut(s) | 531 |
| BsaJI | CCNNGG | 2 cut(s) | 135, 445 |
| BsaWI | WCCGGW | 1 cut(s) | 514 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 154, 382 |
| Bse1I | ACTGG | 1 cut(s) | 761 |
| Bse3DI | GCAATG | 1 cut(s) | 74 |
| BseAI | TCCGGA | 1 cut(s) | 514 |
| BseBI | CCWGG | 1 cut(s) | 794 |
| BseDI | CCNNGG | 2 cut(s) | 135, 445 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 154, 382 |
| BseMI | GCAATG | 1 cut(s) | 74 |
| BseMII | CTCAG | 5 cut(s) | 83, 120, 413, 534, 602 |
| BseNI | ACTGG | 1 cut(s) | 761 |
| BseRI | GAGGAG | 3 cut(s) | 155, 893, 896 |
| BseSI | GKGCMC | 1 cut(s) | 219 |
| BseXI | GCAGC | 3 cut(s) | 160, 586, 875 |
| BseYI | CCCAGC | 2 cut(s) | 116, 687 |
| Bsh1236I | CGCG | 1 cut(s) | 699 |
| BshFI | GGCC | 3 cut(s) | 47, 389, 409 |
| BsiHKAI | GWGCWC | 1 cut(s) | 219 |
| BsiHKCI | CYCGRG | 2 cut(s) | 104, 110 |
| BsiSI | CCGG | 3 cut(s) | 137, 406, 515 |
| BslFI | GGGAC | 4 cut(s) | 118, 202, 212, 359 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 154, 382 |
| BsmAI | GTCTC | 1 cut(s) | 522 |
| BsmBI | CGTCTC | 1 cut(s) | 522 |
| BsmFI | GGGAC | 4 cut(s) | 118, 202, 212, 359 |
| BsmI | GAATGC | 1 cut(s) | 341 |
| BsnI | GGCC | 3 cut(s) | 47, 389, 409 |
| BsoBI | CYCGRG | 2 cut(s) | 104, 110 |
| Bsp1286I | GDGCHC | 5 cut(s) | 105, 111, 117, 147, 219 |
| Bsp13I | TCCGGA | 1 cut(s) | 514 |
| Bsp143I | GATC | 2 cut(s) | 661, 676 |
| BspACI | CCGC | 2 cut(s) | 85, 984 |
| BspANI | GGCC | 3 cut(s) | 47, 389, 409 |
| BspCNI | CTCAG | 5 cut(s) | 82, 121, 414, 535, 601 |
| BspEI | TCCGGA | 1 cut(s) | 514 |
| BspFNI | CGCG | 1 cut(s) | 699 |
| BspHI | TCATGA | 1 cut(s) | 994 |
| BspLI | GGNNCC | 3 cut(s) | 144, 501, 628 |
| BspMAI | CTGCAG | 1 cut(s) | 64 |
| BspPI | GGATC | 1 cut(s) | 669 |
| BspQI | GCTCTTC | 1 cut(s) | 153 |
| BsrDI | GCAATG | 1 cut(s) | 74 |
| BsrI | ACTGG | 1 cut(s) | 761 |
| BssECI | CCNNGG | 2 cut(s) | 135, 445 |
| BssMI | GATC | 2 cut(s) | 661, 676 |
| BssNI | GRCGYC | 1 cut(s) | 531 |
| BssT1I | CCWWGG | 1 cut(s) | 445 |
| Bst2UI | CCWGG | 1 cut(s) | 794 |
| Bst4CI | ACNGT | 2 cut(s) | 373, 483 |
| Bst6I | CTCTTC | 3 cut(s) | 153, 258, 518 |
| BstACI | GRCGYC | 1 cut(s) | 531 |
| BstC8I | GCNNGC | 4 cut(s) | 49, 60, 411, 775 |
| BstDEI | CTNAG | 5 cut(s) | 69, 129, 422, 543, 588 |
| BstFNI | CGCG | 1 cut(s) | 699 |
| BstHHI | GCGC | 1 cut(s) | 699 |
| BstKTI | GATC | 2 cut(s) | 664, 679 |
| BstMAI | GTCTC | 1 cut(s) | 522 |
| BstMBI | GATC | 2 cut(s) | 661, 676 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 303, 539, 872 |
| BstNI | CCWGG | 1 cut(s) | 794 |
| BstNSI | RCATGY | 1 cut(s) | 652 |
| BstSCI | CCNGG | 3 cut(s) | 135, 404, 792 |
| BstSFI | CTRYAG | 1 cut(s) | 60 |
| BstSLI | GKGCMC | 1 cut(s) | 219 |
| BstUI | CGCG | 1 cut(s) | 699 |
| BstV1I | GCAGC | 3 cut(s) | 160, 586, 875 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 452 |
| BsuRI | GGCC | 3 cut(s) | 47, 389, 409 |
| Cac8I | GCNNGC | 4 cut(s) | 49, 60, 411, 775 |
| CaiI | CAGNNNCTG | 1 cut(s) | 377 |
| CciI | TCATGA | 1 cut(s) | 994 |
| CfoI | GCGC | 1 cut(s) | 699 |
| Cfr13I | GGNCC | 1 cut(s) | 1000 |
| CseI | GACGC | 1 cut(s) | 539 |
| CviAII | CATG | 6 cut(s) | 490, 631, 649, 847, 922, 995 |
| DdeI | CTNAG | 5 cut(s) | 69, 129, 422, 543, 588 |
| DpnI | GATC | 2 cut(s) | 663, 678 |
| DpnII | GATC | 2 cut(s) | 661, 676 |
| EaeI | YGGCCR | 1 cut(s) | 387 |
| Eam1104I | CTCTTC | 3 cut(s) | 153, 258, 518 |
| EarI | CTCTTC | 3 cut(s) | 153, 258, 518 |
| Eco130I | CCWWGG | 1 cut(s) | 445 |
| Eco24I | GRGCYC | 4 cut(s) | 105, 111, 117, 147 |
| Eco47I | GGWCC | 1 cut(s) | 1000 |
| Eco57I | CTGAAG | 1 cut(s) | 378 |
| Eco88I | CYCGRG | 2 cut(s) | 104, 110 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1000 |
| EcoRII | CCWGG | 1 cut(s) | 792 |
| EcoT14I | CCWWGG | 1 cut(s) | 445 |
| EcoT38I | GRGCYC | 4 cut(s) | 105, 111, 117, 147 |
| ErhI | CCWWGG | 1 cut(s) | 445 |
| Esp3I | CGTCTC | 1 cut(s) | 522 |
| FaeI | CATG | 6 cut(s) | 493, 634, 652, 850, 925, 998 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 761, 793 |
| FaqI | GGGAC | 4 cut(s) | 118, 202, 212, 359 |
| FatI | CATG | 6 cut(s) | 489, 630, 648, 846, 921, 994 |
| FauI | CCCGC | 2 cut(s) | 78, 977 |
| Fnu4HI | GCNGC | 3 cut(s) | 174, 600, 864 |
| FriOI | GRGCYC | 4 cut(s) | 105, 111, 117, 147 |
| Fsp4HI | GCNGC | 3 cut(s) | 174, 600, 864 |
| GlaI | GCGC | 1 cut(s) | 698 |
| GluI | GCNGC | 3 cut(s) | 174, 600, 864 |
| GsaI | CCCAGC | 2 cut(s) | 120, 691 |
| GsuI | CTGGAG | 3 cut(s) | 744, 852, 915 |
| HaeIII | GGCC | 3 cut(s) | 47, 389, 409 |
| HapII | CCGG | 3 cut(s) | 137, 406, 515 |
| HgaI | GACGC | 1 cut(s) | 539 |
| HhaI | GCGC | 1 cut(s) | 699 |
| Hin1I | GRCGYC | 1 cut(s) | 531 |
| Hin1II | CATG | 6 cut(s) | 493, 634, 652, 850, 925, 998 |
| Hin6I | GCGC | 1 cut(s) | 697 |
| HinP1I | GCGC | 1 cut(s) | 697 |
| HinfI | GANTC | 1 cut(s) | 131 |
| HpaII | CCGG | 3 cut(s) | 137, 406, 515 |
| HphI | GGTGA | 3 cut(s) | 232, 390, 467 |
| Hpy166II | GTNNAC | 1 cut(s) | 217 |
| Hpy188I | TCNGA | 2 cut(s) | 358, 591 |
| Hpy188III | TCNNGA | 6 cut(s) | 284, 515, 869, 932, 941, 995 |
| Hpy8I | GTNNAC | 1 cut(s) | 217 |
| HpyAV | CCTTC | 7 cut(s) | 16, 163, 411, 610, 617, 775, 982 |
| HpyCH4III | ACNGT | 2 cut(s) | 373, 483 |
| HpyCH4V | TGCA | 5 cut(s) | 62, 217, 250, 487, 925 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 303, 539, 872 |
| HpyF3I | CTNAG | 5 cut(s) | 69, 129, 422, 543, 588 |
| Hsp92I | GRCGYC | 1 cut(s) | 531 |
| Hsp92II | CATG | 6 cut(s) | 493, 634, 652, 850, 925, 998 |
| HspAI | GCGC | 1 cut(s) | 697 |
| Kpn2I | TCCGGA | 1 cut(s) | 514 |
| Kzo9I | GATC | 2 cut(s) | 661, 676 |
| LguI | GCTCTTC | 1 cut(s) | 153 |
| LmnI | GCTCC | 4 cut(s) | 11, 142, 282, 871 |
| Lsp1109I | GCAGC | 3 cut(s) | 160, 586, 875 |
| LweI | GCATC | 2 cut(s) | 435, 832 |
| MalI | GATC | 2 cut(s) | 663, 678 |
| MboI | GATC | 2 cut(s) | 661, 676 |
| MboII | GAAGA | 9 cut(s) | 170, 275, 371, 374, 470, 535, 632, 683, 686 |
| MhlI | GDGCHC | 5 cut(s) | 105, 111, 117, 147, 219 |
| MlsI | TGGCCA | 1 cut(s) | 389 |
| MluCI | AATT | 5 cut(s) | 224, 366, 752, 833, 965 |
| MluNI | TGGCCA | 1 cut(s) | 389 |
| MlyI | GAGTC | 1 cut(s) | 140 |
| Mox20I | TGGCCA | 1 cut(s) | 389 |
| MroI | TCCGGA | 1 cut(s) | 514 |
| MscI | TGGCCA | 1 cut(s) | 389 |
| MseI | TTAA | 2 cut(s) | 737, 768 |
| Msp20I | TGGCCA | 1 cut(s) | 389 |
| MspI | CCGG | 3 cut(s) | 137, 406, 515 |
| MspR9I | CCNGG | 3 cut(s) | 137, 406, 794 |
| Mva1269I | GAATGC | 1 cut(s) | 341 |
| MvaI | CCWGG | 1 cut(s) | 794 |
| MvnI | CGCG | 1 cut(s) | 699 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 303, 539, 872 |
| NciI | CCSGG | 2 cut(s) | 137, 406 |
| NdeII | GATC | 2 cut(s) | 661, 676 |
| NlaIII | CATG | 6 cut(s) | 493, 634, 652, 850, 925, 998 |
| NlaIV | GGNNCC | 3 cut(s) | 144, 501, 628 |
| NspI | RCATGY | 1 cut(s) | 652 |
| PagI | TCATGA | 1 cut(s) | 994 |
| PciSI | GCTCTTC | 1 cut(s) | 153 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 330 |
| PctI | GAATGC | 1 cut(s) | 341 |
| PfoI | TCCNGGA | 1 cut(s) | 792 |
| PkrI | GCNGC | 3 cut(s) | 175, 601, 865 |
| PleI | GAGTC | 1 cut(s) | 139 |
| PpsI | GAGTC | 1 cut(s) | 139 |
| PpuMI | RGGWCCY | 1 cut(s) | 1000 |
| PsiI | TTATAA | 1 cut(s) | 909 |
| Psp5II | RGGWCCY | 1 cut(s) | 1000 |
| Psp6I | CCWGG | 1 cut(s) | 792 |
| PspFI | CCCAGC | 2 cut(s) | 116, 687 |
| PspGI | CCWGG | 1 cut(s) | 792 |
| PspN4I | GGNNCC | 3 cut(s) | 144, 501, 628 |
| PspPI | GGNCC | 1 cut(s) | 1000 |
| PspPPI | RGGWCCY | 1 cut(s) | 1000 |
| PstI | CTGCAG | 1 cut(s) | 64 |
| PstNI | CAGNNNCTG | 1 cut(s) | 377 |
| SapI | GCTCTTC | 1 cut(s) | 153 |
| SaqAI | TTAA | 2 cut(s) | 737, 768 |
| SatI | GCNGC | 3 cut(s) | 174, 600, 864 |
| Sau3AI | GATC | 2 cut(s) | 661, 676 |
| Sau96I | GGNCC | 1 cut(s) | 1000 |
| SchI | GAGTC | 1 cut(s) | 140 |
| ScrFI | CCNGG | 3 cut(s) | 137, 406, 794 |
| SduI | GDGCHC | 5 cut(s) | 105, 111, 117, 147, 219 |
| SfaNI | GCATC | 2 cut(s) | 435, 832 |
| SfcI | CTRYAG | 1 cut(s) | 60 |
| SinI | GGWCC | 1 cut(s) | 1000 |
| SmlI | CTYRAG | 1 cut(s) | 564 |
| SmoI | CTYRAG | 1 cut(s) | 564 |
| Sse9I | AATT | 5 cut(s) | 224, 366, 752, 833, 965 |
| SsiI | CCGC | 2 cut(s) | 85, 984 |
| StyD4I | CCNGG | 3 cut(s) | 135, 404, 792 |
| StyI | CCWWGG | 1 cut(s) | 445 |
| TaaI | ACNGT | 2 cut(s) | 373, 483 |
| TaqI | TCGA | 4 cut(s) | 99, 333, 429, 859 |
| TasI | AATT | 5 cut(s) | 224, 366, 752, 833, 965 |
| Tru1I | TTAA | 2 cut(s) | 737, 768 |
| Tru9I | TTAA | 2 cut(s) | 737, 768 |
| TseI | GCWGC | 3 cut(s) | 173, 599, 863 |
| TspDTI | ATGAA | 6 cut(s) | 432, 491, 569, 647, 822, 958 |
| VneI | GTGCAC | 1 cut(s) | 215 |
| VpaK11BI | GGWCC | 1 cut(s) | 1000 |
| XapI | RAATTY | 3 cut(s) | 224, 833, 965 |
| XceI | RCATGY | 1 cut(s) | 652 |