Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004924.1

Orthogroup ID

OG0000661

Physical Location & Seq

Genomic Coordinates Forward (+)

89239 .. 90734

Gene Structure 1496 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004924.1_g000020.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 552 bp

atggcgctaagctcatcagaggaggaactgagactactagccagagagaatcgggagagaagagaaaggagggtcaagccccgacatgccgagtactcggaggagccccggagcctagagggtctatggaaggctgcctttcctgctgggacactgaggtctgttttggactcgccactccaccattctttcaagtgggatttcttgaatattgaagaagcactcgaaggaggaggaaagctgtacaagaagagcagcagagtttatcgattcggctccacggaggaggccatggttaaaagagaagtggttgctttgatccctgtgttggtggccgttgtttcggcttctccgccttccaatgagcttggacttgttttaagtgagggaaaagtggaagagataattccgatgaagagattgaagatagactgggctccatatattcctttggacaagagattagacaaagaaggtcctgaaatctttggtcttgagctgcaagcaaagaagggctgctctcaaacacaaaaatgtcaagggaagccgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005730 GO:0006950 GO:0007088 GO:0007346 GO:0008150 GO:0009266 GO:0009408 GO:0009628 GO:0009893 GO:0010286 GO:0010369 GO:0010468 GO:0010564 GO:0010604 GO:0010628 GO:0019222 GO:0031974 GO:0031981 GO:0033043 GO:0033044 GO:0033045 GO:0033047 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044464 GO:0048518 GO:0048519 GO:0048523 GO:0048583 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051726 GO:0051783 GO:0051983 GO:0060255 GO:0060968 GO:0060969 GO:0065007 GO:0070013 GO:0080134 GO:0080135 GO:0098687 GO:1900034 GO:1901651

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

183

Amino Acids

20.71

Weight (kDa)

8.81

Isoelectric Point (pI)

63.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000661)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G10010
fragaria_vesca	FvH4_6g03222 FvH4_6g03560 FvH4_6g03561 FvH4_6g03563 FvH4_6g03590 FvH4_6g03590 FvH4_6g09260
malus_domestica	MD04G1220200.v1.1 MD12G1240700.v1.1 MD15G1083500.v1.1
prunus_persica	Prupe.1G436000_v2.0.a1 Prupe.6G174800_v2.0.a1 Prupe.6G339200_v2.0.a1
pyrus_communis	pycom08g08260 pycom15g07800 pycom15g07810
rosa_chinensis	RchiOBHm_Chr3g0451551 RchiOBHm_Chr3g0451591 RchiOBHm_Chr3g0451621 RchiOBHm_Chr3g0452131 RchiOBHm_Chr3g0459621
rosa_laevigata	RLG00000025074 RLG00000025077 RLG00000025626 RLG00000029505 RLG00000035382 RLG00000035384
rosa_multiflora	Rmu_co8173672.1_g000001 Rmu_sc0000240.1_g000011 Rmu_sc0000240.1_g000014 Rmu_sc0004924.1_g000012 Rmu_sc0004924.1_g000020 Rmu_sc0004924.1_g000023 Rmu_sc0004924.1_g000025 Rmu_sc0004924.1_g000034 Rmu_sc0004924.1_g000035 Rmu_sc0009360.1_g000006 Rmu_sc0009360.1_g000008 Rmu_sc0009360.1_g000014 Rmu_sc0009360.1_g000047 Rmu_sc0011887.1_g000001 Rmu_sc0015119.1_g000001 Rmu_sc0023706.1_g000002
rosa_roxburghii	Rroxscaffold_164G00436050 Rroxscaffold_164G00436390 Rroxscaffold_164G00436450 Rroxscaffold_164G00436460 Rroxscaffold_4G00317080 Rroxscaffold_4G00317090 Rroxscaffold_6G00420140 Rroxscaffold_6G00428920
rosa_rugosa	Rorug02G0634200 Rorug02G0634500 Rorug02G0634700 Rorug02G0635400 Rorug02G0638500 Rorug03G0036600 Rorug03G0036700
rosa_samantha	Rh1BG103700 Rh1BG103800 Rh3AG040400 Rh3BG037900 Rh3BG038200 Rh3BG041900 Rh3BG097900 Rh3CG036600 Rh3CG040300 Rh3DG037300 Rh3DG037500 Rh3DG041200 Rh3DG099300
rosa_wichuraiana	Rw0G013830 Rw0G017580 Rw0G017600 Rw3G003070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	157
AciI	CCGC	1 cut(s)	353
AclWI	GGATC	1 cut(s)	313
AcoI	YGGCCR	1 cut(s)	333
AfaI	GTAC	2 cut(s)	95, 245
AfiI	CCNNNNNNNGG	1 cut(s)	328
AgsI	TTSAA	4 cut(s)	193, 208, 215, 424
AluBI	AGCT	4 cut(s)	12, 241, 367, 499
AluI	AGCT	4 cut(s)	12, 241, 367, 499
Alw26I	GTCTC	1 cut(s)	25
AlwI	GGATC	1 cut(s)	313
AoxI	GGCC	2 cut(s)	288, 333
ApeKI	GCWGC	4 cut(s)	134, 255, 499, 516
AspLEI	GCGC	1 cut(s)	7
AspS9I	GGNCC	1 cut(s)	476
AsuC2I	CCSGG	1 cut(s)	109
AvaII	GGWCC	1 cut(s)	476
BanII	GRGCYC	2 cut(s)	108, 439
BbvI	GCAGC	4 cut(s)	121, 267, 486, 503
BceAI	ACGGC	2 cut(s)	320, 532
BcnI	CCSGG	1 cut(s)	109
BcoDI	GTCTC	1 cut(s)	25
BfaI	CTAG	2 cut(s)	38, 116
BfoI	RGCGCY	1 cut(s)	8
BisI	GCNGC	4 cut(s)	135, 256, 500, 517
BlpI	GCTNAGC	1 cut(s)	8
BlsI	GCNGC	4 cut(s)	136, 257, 501, 518
BmcAI	AGTACT	1 cut(s)	95
Bme1390I	CCNGG	1 cut(s)	109
Bme18I	GGWCC	1 cut(s)	476
BmgT120I	GGNCC	1 cut(s)	476
BmiI	GGNNCC	4 cut(s)	105, 113, 277, 438
BmrFI	CCNGG	1 cut(s)	109
BmrI	ACTGGG	1 cut(s)	442
BmuI	ACTGGG	1 cut(s)	442
Bpu1102I	GCTNAGC	1 cut(s)	8
BpuEI	CTTGAG	1 cut(s)	515
BpuMI	CCSGG	1 cut(s)	109
Bsa29I	ATCGAT	1 cut(s)	268
BsaJI	CCNNGG	3 cut(s)	107, 279, 291
Bsc4I	CCNNNNNNNGG	1 cut(s)	328
Bse1I	ACTGG	1 cut(s)	437
BseCI	ATCGAT	1 cut(s)	268
BseDI	CCNNGG	3 cut(s)	107, 279, 291
BseLI	CCNNNNNNNGG	1 cut(s)	328
BseMII	CTCAG	2 cut(s)	20, 146
BseNI	ACTGG	1 cut(s)	437
BseRI	GAGGAG	4 cut(s)	35, 116, 246, 299
BseXI	GCAGC	4 cut(s)	121, 267, 486, 503
BseYI	CCCAGC	1 cut(s)	146
BshFI	GGCC	2 cut(s)	290, 335
BshVI	ATCGAT	1 cut(s)	268
BsiSI	CCGG	1 cut(s)	109
BslFI	GGGAC	1 cut(s)	163
BslI	CCNNNNNNNGG	1 cut(s)	328
BsmAI	GTCTC	1 cut(s)	25
BsmFI	GGGAC	1 cut(s)	163
BsnI	GGCC	2 cut(s)	290, 335
Bsp1286I	GDGCHC	2 cut(s)	108, 439
Bsp1407I	TGTACA	1 cut(s)	243
Bsp143I	GATC	1 cut(s)	318
Bsp1720I	GCTNAGC	1 cut(s)	8
Bsp19I	CCATGG	1 cut(s)	291
BspACI	CCGC	1 cut(s)	353
BspANI	GGCC	2 cut(s)	290, 335
BspCNI	CTCAG	2 cut(s)	21, 147
BspDI	ATCGAT	1 cut(s)	268
BspLI	GGNNCC	4 cut(s)	105, 113, 277, 438
BspPI	GGATC	1 cut(s)	313
BspQI	GCTCTTC	1 cut(s)	245
BsrGI	TGTACA	1 cut(s)	243
BsrI	ACTGG	1 cut(s)	437
BssECI	CCNNGG	3 cut(s)	107, 279, 291
BssMI	GATC	1 cut(s)	318
BssT1I	CCWWGG	1 cut(s)	291
Bst6I	CTCTTC	4 cut(s)	55, 245, 393, 410
BstAUI	TGTACA	1 cut(s)	243
BstC8I	GCNNGC	1 cut(s)	504
BstDEI	CTNAG	3 cut(s)	8, 29, 155
BstDSI	CCRYGG	2 cut(s)	279, 291
BstH2I	RGCGCY	1 cut(s)	8
BstHHI	GCGC	1 cut(s)	7
BstKTI	GATC	1 cut(s)	321
BstMAI	GTCTC	1 cut(s)	25
BstMBI	GATC	1 cut(s)	318
BstMWI	GCNNNNNNNGC	1 cut(s)	143
BstNSI	RCATGY	1 cut(s)	89
BstSCI	CCNGG	1 cut(s)	107
BstV1I	GCAGC	4 cut(s)	121, 267, 486, 503
Bsu15I	ATCGAT	1 cut(s)	268
BsuRI	GGCC	2 cut(s)	290, 335
BsuTUI	ATCGAT	1 cut(s)	268
BtgI	CCRYGG	2 cut(s)	279, 291
BtsIMutI	CAGTG	1 cut(s)	152
Cac8I	GCNNGC	1 cut(s)	504
CfoI	GCGC	1 cut(s)	7
Cfr13I	GGNCC	1 cut(s)	476
ClaI	ATCGAT	1 cut(s)	268
Csp6I	GTAC	2 cut(s)	94, 244
CviAII	CATG	2 cut(s)	86, 292
CviQI	GTAC	2 cut(s)	94, 244
DdeI	CTNAG	3 cut(s)	8, 29, 155
DpnI	GATC	1 cut(s)	320
DpnII	GATC	1 cut(s)	318
DrdI	GACNNNNNNGTC	1 cut(s)	157
DseDI	GACNNNNNNGTC	1 cut(s)	157
EaeI	YGGCCR	1 cut(s)	333
Eam1104I	CTCTTC	4 cut(s)	55, 245, 393, 410
EarI	CTCTTC	4 cut(s)	55, 245, 393, 410
EciI	GGCGGA	1 cut(s)	342
Eco130I	CCWWGG	1 cut(s)	291
Eco24I	GRGCYC	2 cut(s)	108, 439
Eco47I	GGWCC	1 cut(s)	476
EcoO109I	RGGNCCY	1 cut(s)	476
EcoT14I	CCWWGG	1 cut(s)	291
EcoT38I	GRGCYC	2 cut(s)	108, 439
ErhI	CCWWGG	1 cut(s)	291
FaeI	CATG	2 cut(s)	89, 295
FaiI	YATR	5 cut(s)	87, 127, 293, 442, 444
FalI	AAGNNNNNCTT	2 cut(s)	122, 154
FaqI	GGGAC	1 cut(s)	163
FatI	CATG	2 cut(s)	85, 291
Fnu4HI	GCNGC	4 cut(s)	135, 256, 500, 517
FriOI	GRGCYC	2 cut(s)	108, 439
Fsp4HI	GCNGC	4 cut(s)	135, 256, 500, 517
FspBI	CTAG	2 cut(s)	38, 116
GlaI	GCGC	1 cut(s)	6
GluI	GCNGC	4 cut(s)	135, 256, 500, 517
GsaI	CCCAGC	1 cut(s)	150
HaeII	RGCGCY	1 cut(s)	8
HaeIII	GGCC	2 cut(s)	290, 335
HapII	CCGG	1 cut(s)	109
HhaI	GCGC	1 cut(s)	7
Hin1II	CATG	2 cut(s)	89, 295
Hin6I	GCGC	1 cut(s)	5
HinP1I	GCGC	1 cut(s)	5
HinfI	GANTC	3 cut(s)	49, 170, 270
HpaII	CCGG	1 cut(s)	109
Hpy188I	TCNGA	3 cut(s)	19, 100, 411
Hpy188III	TCNNGA	4 cut(s)	53, 205, 479, 494
HpyAV	CCTTC	5 cut(s)	124, 221, 366, 467, 505
HpyCH4V	TGCA	1 cut(s)	502
HpyF10VI	GCNNNNNNNGC	1 cut(s)	143
HpyF3I	CTNAG	3 cut(s)	8, 29, 155
Hsp92II	CATG	2 cut(s)	89, 295
HspAI	GCGC	1 cut(s)	5
Kzo9I	GATC	1 cut(s)	318
LguI	GCTCTTC	1 cut(s)	245
LmnI	GCTCC	4 cut(s)	103, 111, 281, 442
LpnPI	CCDG	7 cut(s)	55, 122, 132, 156, 336, 418, 492
Lsp1109I	GCAGC	4 cut(s)	121, 267, 486, 503
MaeI	CTAG	2 cut(s)	38, 116
MalI	GATC	1 cut(s)	320
MboI	GATC	1 cut(s)	318
MboII	GAAGA	6 cut(s)	72, 227, 262, 410, 427, 436
MhlI	GDGCHC	2 cut(s)	108, 439
MluCI	AATT	1 cut(s)	405
MlyI	GAGTC	1 cut(s)	164
MseI	TTAA	2 cut(s)	297, 380
MslI	CAYNNNNRTG	1 cut(s)	532
MspI	CCGG	1 cut(s)	109
MspR9I	CCNGG	1 cut(s)	109
MwoI	GCNNNNNNNGC	1 cut(s)	143
NciI	CCSGG	1 cut(s)	109
NcoI	CCATGG	1 cut(s)	291
NdeII	GATC	1 cut(s)	318
NlaIII	CATG	2 cut(s)	89, 295
NlaIV	GGNNCC	4 cut(s)	105, 113, 277, 438
NmeAIII	GCCGAG	1 cut(s)	115
NspI	RCATGY	1 cut(s)	89
PciSI	GCTCTTC	1 cut(s)	245
PfeI	GAWTC	2 cut(s)	49, 270
PkrI	GCNGC	4 cut(s)	136, 257, 501, 518
PleI	GAGTC	1 cut(s)	164
PpsI	GAGTC	1 cut(s)	164
PpuMI	RGGWCCY	1 cut(s)	476
Psp5II	RGGWCCY	1 cut(s)	476
PspFI	CCCAGC	1 cut(s)	146
PspN4I	GGNNCC	4 cut(s)	105, 113, 277, 438
PspPI	GGNCC	1 cut(s)	476
PspPPI	RGGWCCY	1 cut(s)	476
PsrI	GAACNNNNNNTAC	2 cut(s)	18, 50
RsaI	GTAC	2 cut(s)	95, 245
RsaNI	GTAC	2 cut(s)	94, 244
RseI	CAYNNNNRTG	1 cut(s)	532
SapI	GCTCTTC	1 cut(s)	245
SaqAI	TTAA	2 cut(s)	297, 380
SatI	GCNGC	4 cut(s)	135, 256, 500, 517
Sau3AI	GATC	1 cut(s)	318
Sau96I	GGNCC	1 cut(s)	476
ScaI	AGTACT	1 cut(s)	95
SchI	GAGTC	1 cut(s)	164
ScrFI	CCNGG	1 cut(s)	109
SduI	GDGCHC	2 cut(s)	108, 439
SetI	ASST	6 cut(s)	14, 161, 243, 369, 478, 501
SinI	GGWCC	1 cut(s)	476
SmiMI	CAYNNNNRTG	1 cut(s)	532
SmlI	CTYRAG	1 cut(s)	494
SmoI	CTYRAG	1 cut(s)	494
Sse9I	AATT	1 cut(s)	405
SsiI	CCGC	1 cut(s)	353
SspI	AATATT	1 cut(s)	211
SspMI	CTAG	2 cut(s)	38, 116
StyD4I	CCNGG	1 cut(s)	107
StyI	CCWWGG	1 cut(s)	291
TaqI	TCGA	2 cut(s)	225, 268
TasI	AATT	1 cut(s)	405
TatI	WGTACW	2 cut(s)	93, 243
TfiI	GAWTC	2 cut(s)	49, 270
Tru1I	TTAA	2 cut(s)	297, 380
Tru9I	TTAA	2 cut(s)	297, 380
TscAI	CASTG	1 cut(s)	159
TseI	GCWGC	4 cut(s)	134, 255, 499, 516
TspDTI	ATGAA	1 cut(s)	428
TspGWI	ACGGA	1 cut(s)	296
TspRI	CASTG	1 cut(s)	159
VpaK11BI	GGWCC	1 cut(s)	476
XceI	RCATGY	1 cut(s)	89
XspI	CTAG	2 cut(s)	38, 116
ZrmI	AGTACT	1 cut(s)	95

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.