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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 3 cut(s) | 176, 328, 364 |
| AccI | GTMKAC | 1 cut(s) | 291 |
| AccII | CGCG | 2 cut(s) | 72, 81 |
| AciI | CCGC | 9 cut(s) | 35, 63, 98, 104, 161, 374, 530, 692, 701 |
| AclWI | GGATC | 7 cut(s) | 195, 334, 401, 451, 464, 878, 891 |
| AcoI | YGGCCR | 1 cut(s) | 371 |
| AcsI | RAATTY | 4 cut(s) | 242, 263, 493, 523 |
| AcuI | CTGAAG | 1 cut(s) | 283 |
| AcyI | GRCGYC | 1 cut(s) | 365 |
| AdeI | CACNNNGTG | 1 cut(s) | 183 |
| AfaI | GTAC | 4 cut(s) | 122, 611, 746, 948 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 349 |
| AgsI | TTSAA | 3 cut(s) | 146, 574, 996 |
| AleI | CACNNNNGTG | 1 cut(s) | 965 |
| AluBI | AGCT | 5 cut(s) | 570, 757, 775, 874, 909 |
| AluI | AGCT | 5 cut(s) | 570, 757, 775, 874, 909 |
| Alw26I | GTCTC | 1 cut(s) | 305 |
| AlwI | GGATC | 7 cut(s) | 195, 334, 401, 451, 464, 878, 891 |
| Ama87I | CYCGRG | 3 cut(s) | 233, 682, 1007 |
| AoxI | GGCC | 4 cut(s) | 45, 87, 371, 765 |
| ApeKI | GCWGC | 2 cut(s) | 100, 133 |
| ApoI | RAATTY | 4 cut(s) | 242, 263, 493, 523 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 242 |
| AspLEI | GCGC | 4 cut(s) | 74, 81, 367, 700 |
| AspS9I | GGNCC | 1 cut(s) | 589 |
| AsuC2I | CCSGG | 2 cut(s) | 32, 170 |
| AsuII | TTCGAA | 2 cut(s) | 246, 521 |
| AvaI | CYCGRG | 3 cut(s) | 233, 682, 1007 |
| AvaII | GGWCC | 1 cut(s) | 589 |
| BamHI | GGATCC | 2 cut(s) | 456, 883 |
| BanI | GGYRCC | 3 cut(s) | 176, 328, 364 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 593, 625 |
| BbvI | GCAGC | 2 cut(s) | 112, 145 |
| BccI | CCATC | 3 cut(s) | 34, 376, 442 |
| BceAI | ACGGC | 5 cut(s) | 286, 307, 341, 361, 604 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 8, 42 |
| BclI | TGATCA | 1 cut(s) | 759 |
| BcnI | CCSGG | 2 cut(s) | 32, 170 |
| BcoDI | GTCTC | 1 cut(s) | 305 |
| BfoI | RGCGCY | 2 cut(s) | 368, 701 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 362 |
| BglII | AGATCT | 1 cut(s) | 148 |
| BmcAI | AGTACT | 1 cut(s) | 611 |
| Bme1390I | CCNGG | 2 cut(s) | 32, 170 |
| Bme18I | GGWCC | 1 cut(s) | 589 |
| BmeT110I | CYCGRG | 3 cut(s) | 233, 682, 1007 |
| BmgT120I | GGNCC | 1 cut(s) | 589 |
| BmiI | GGNNCC | 9 cut(s) | 13, 114, 178, 330, 366, 458, 508, 690, 885 |
| BmrFI | CCNGG | 2 cut(s) | 32, 170 |
| BmrI | ACTGGG | 1 cut(s) | 226 |
| BmsI | GCATC | 2 cut(s) | 282, 539 |
| BmuI | ACTGGG | 1 cut(s) | 226 |
| BoxI | GACNNNNGTC | 1 cut(s) | 350 |
| BpmI | CTGGAG | 1 cut(s) | 494 |
| Bpu14I | TTCGAA | 2 cut(s) | 246, 521 |
| BpuMI | CCSGG | 2 cut(s) | 32, 170 |
| BsaAI | YACGTR | 1 cut(s) | 124 |
| BsaBI | GATNNNNATC | 1 cut(s) | 392 |
| BsaHI | GRCGYC | 1 cut(s) | 365 |
| BsaJI | CCNNGG | 4 cut(s) | 268, 368, 683, 768 |
| BsaWI | WCCGGW | 2 cut(s) | 115, 515 |
| BsaXI | ACNNNNNCTCC | 1 cut(s) | 1006 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 349 |
| Bse118I | RCCGGY | 1 cut(s) | 331 |
| Bse1I | ACTGG | 2 cut(s) | 221, 607 |
| Bse8I | GATNNNNATC | 1 cut(s) | 392 |
| BseDI | CCNNGG | 4 cut(s) | 268, 368, 683, 768 |
| BseGI | GGATG | 3 cut(s) | 554, 603, 736 |
| BseJI | GATNNNNATC | 1 cut(s) | 392 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 349 |
| BseMII | CTCAG | 2 cut(s) | 107, 771 |
| BseNI | ACTGG | 2 cut(s) | 221, 607 |
| BseRI | GAGGAG | 7 cut(s) | 143, 428, 519, 656, 659, 755, 785 |
| BseX3I | CGGCCG | 1 cut(s) | 371 |
| BseXI | GCAGC | 2 cut(s) | 112, 145 |
| BseYI | CCCAGC | 1 cut(s) | 544 |
| BsgI | GTGCAG | 2 cut(s) | 425, 731 |
| Bsh1236I | CGCG | 2 cut(s) | 72, 81 |
| Bsh1285I | CGRYCG | 2 cut(s) | 174, 374 |
| BshFI | GGCC | 4 cut(s) | 47, 89, 373, 767 |
| BshNI | GGYRCC | 3 cut(s) | 176, 328, 364 |
| BsiEI | CGRYCG | 2 cut(s) | 174, 374 |
| BsiHKCI | CYCGRG | 3 cut(s) | 233, 682, 1007 |
| BsiSI | CCGG | 5 cut(s) | 32, 116, 170, 332, 516 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 349 |
| BsmAI | GTCTC | 1 cut(s) | 305 |
| BsnI | GGCC | 4 cut(s) | 47, 89, 373, 767 |
| BsoBI | CYCGRG | 3 cut(s) | 233, 682, 1007 |
| Bsp119I | TTCGAA | 2 cut(s) | 246, 521 |
| Bsp143I | GATC | 7 cut(s) | 148, 187, 339, 393, 456, 759, 883 |
| BspACI | CCGC | 9 cut(s) | 35, 63, 98, 104, 161, 374, 530, 692, 701 |
| BspANI | GGCC | 4 cut(s) | 47, 89, 373, 767 |
| BspCNI | CTCAG | 2 cut(s) | 106, 772 |
| BspFNI | CGCG | 2 cut(s) | 72, 81 |
| BspLI | GGNNCC | 9 cut(s) | 13, 114, 178, 330, 366, 458, 508, 690, 885 |
| BspPI | GGATC | 7 cut(s) | 195, 334, 401, 451, 464, 878, 891 |
| BspT104I | TTCGAA | 2 cut(s) | 246, 521 |
| BspT107I | GGYRCC | 3 cut(s) | 176, 328, 364 |
| BsrFI | RCCGGY | 1 cut(s) | 331 |
| BsrI | ACTGG | 2 cut(s) | 221, 607 |
| BssAI | RCCGGY | 1 cut(s) | 331 |
| BssECI | CCNNGG | 4 cut(s) | 268, 368, 683, 768 |
| BssMI | GATC | 7 cut(s) | 148, 187, 339, 393, 456, 759, 883 |
| BssNI | GRCGYC | 1 cut(s) | 365 |
| Bst4CI | ACNGT | 4 cut(s) | 593, 614, 664, 946 |
| Bst6I | CTCTTC | 3 cut(s) | 302, 683, 846 |
| BstACI | GRCGYC | 1 cut(s) | 365 |
| BstBAI | YACGTR | 1 cut(s) | 124 |
| BstBI | TTCGAA | 2 cut(s) | 246, 521 |
| BstC8I | GCNNGC | 4 cut(s) | 28, 554, 568, 696 |
| BstDEI | CTNAG | 3 cut(s) | 93, 780, 984 |
| BstDSI | CCRYGG | 1 cut(s) | 268 |
| BstF5I | GGATG | 3 cut(s) | 554, 603, 736 |
| BstFNI | CGCG | 2 cut(s) | 72, 81 |
| BstH2I | RGCGCY | 2 cut(s) | 368, 701 |
| BstHHI | GCGC | 4 cut(s) | 74, 81, 367, 700 |
| BstKTI | GATC | 7 cut(s) | 151, 190, 342, 396, 459, 762, 886 |
| BstMAI | GTCTC | 1 cut(s) | 305 |
| BstMBI | GATC | 7 cut(s) | 148, 187, 339, 393, 456, 759, 883 |
| BstMCI | CGRYCG | 2 cut(s) | 174, 374 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 350 |
| BstSCI | CCNGG | 2 cut(s) | 30, 168 |
| BstUI | CGCG | 2 cut(s) | 72, 81 |
| BstV1I | GCAGC | 2 cut(s) | 112, 145 |
| BstX2I | RGATCY | 3 cut(s) | 148, 456, 883 |
| BstYI | RGATCY | 3 cut(s) | 148, 456, 883 |
| BstZI | CGGCCG | 1 cut(s) | 371 |
| BsuRI | GGCC | 4 cut(s) | 47, 89, 373, 767 |
| BtgI | CCRYGG | 1 cut(s) | 268 |
| BtgZI | GCGATG | 1 cut(s) | 53 |
| BtsCI | GGATG | 3 cut(s) | 554, 603, 736 |
| BtsIMutI | CAGTG | 1 cut(s) | 747 |
| Cac8I | GCNNGC | 4 cut(s) | 28, 554, 568, 696 |
| CfoI | GCGC | 4 cut(s) | 74, 81, 367, 700 |
| Cfr10I | RCCGGY | 1 cut(s) | 331 |
| Cfr13I | GGNCC | 1 cut(s) | 589 |
| CseI | GACGC | 2 cut(s) | 70, 355 |
| Csp6I | GTAC | 4 cut(s) | 121, 610, 745, 947 |
| CviAII | CATG | 1 cut(s) | 802 |
| CviQI | GTAC | 4 cut(s) | 121, 610, 745, 947 |
| DdeI | CTNAG | 3 cut(s) | 93, 780, 984 |
| DinI | GGCGCC | 1 cut(s) | 366 |
| DpnI | GATC | 7 cut(s) | 150, 189, 341, 395, 458, 761, 885 |
| DpnII | GATC | 7 cut(s) | 148, 187, 339, 393, 456, 759, 883 |
| DraIII | CACNNNGTG | 1 cut(s) | 183 |
| EaeI | YGGCCR | 1 cut(s) | 371 |
| EagI | CGGCCG | 1 cut(s) | 371 |
| Eam1104I | CTCTTC | 3 cut(s) | 302, 683, 846 |
| EarI | CTCTTC | 3 cut(s) | 302, 683, 846 |
| EclXI | CGGCCG | 1 cut(s) | 371 |
| Eco147I | AGGCCT | 1 cut(s) | 89 |
| Eco47I | GGWCC | 1 cut(s) | 589 |
| Eco52I | CGGCCG | 1 cut(s) | 371 |
| Eco57I | CTGAAG | 1 cut(s) | 283 |
| Eco88I | CYCGRG | 3 cut(s) | 233, 682, 1007 |
| EcoRI | GAATTC | 2 cut(s) | 242, 493 |
| EgeI | GGCGCC | 1 cut(s) | 366 |
| EheI | GGCGCC | 1 cut(s) | 366 |
| FaeI | CATG | 1 cut(s) | 805 |
| FaiI | YATR | 7 cut(s) | 154, 617, 674, 803, 915, 923, 942 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 554, 586 |
| FatI | CATG | 1 cut(s) | 801 |
| FbaI | TGATCA | 1 cut(s) | 759 |
| FblI | GTMKAC | 1 cut(s) | 291 |
| FokI | GGATG | 3 cut(s) | 561, 610, 743 |
| GlaI | GCGC | 4 cut(s) | 73, 80, 366, 699 |
| GsaI | CCCAGC | 1 cut(s) | 548 |
| GsuI | CTGGAG | 1 cut(s) | 494 |
| HaeII | RGCGCY | 2 cut(s) | 368, 701 |
| HaeIII | GGCC | 4 cut(s) | 47, 89, 373, 767 |
| HapII | CCGG | 5 cut(s) | 32, 116, 170, 332, 516 |
| HgaI | GACGC | 2 cut(s) | 70, 355 |
| HhaI | GCGC | 4 cut(s) | 74, 81, 367, 700 |
| Hin1I | GRCGYC | 1 cut(s) | 365 |
| Hin1II | CATG | 1 cut(s) | 805 |
| Hin6I | GCGC | 4 cut(s) | 72, 79, 365, 698 |
| HinP1I | GCGC | 4 cut(s) | 72, 79, 365, 698 |
| HinfI | GANTC | 3 cut(s) | 197, 229, 631 |
| HpaII | CCGG | 5 cut(s) | 32, 116, 170, 332, 516 |
| Hpy166II | GTNNAC | 2 cut(s) | 292, 747 |
| Hpy188I | TCNGA | 5 cut(s) | 112, 278, 432, 499, 636 |
| Hpy188III | TCNNGA | 9 cut(s) | 146, 226, 233, 235, 343, 473, 682, 896, 1007 |
| Hpy8I | GTNNAC | 2 cut(s) | 292, 747 |
| Hpy99I | CGWCG | 4 cut(s) | 328, 349, 362, 382 |
| HpyCH4III | ACNGT | 4 cut(s) | 593, 614, 664, 946 |
| HpyCH4IV | ACGT | 1 cut(s) | 123 |
| HpyCH4V | TGCA | 3 cut(s) | 406, 552, 712 |
| HpyF3I | CTNAG | 3 cut(s) | 93, 780, 984 |
| HpySE526I | ACGT | 1 cut(s) | 123 |
| Hsp92I | GRCGYC | 1 cut(s) | 365 |
| Hsp92II | CATG | 1 cut(s) | 805 |
| HspAI | GCGC | 4 cut(s) | 72, 79, 365, 698 |
| KasI | GGCGCC | 1 cut(s) | 364 |
| Ksp22I | TGATCA | 1 cut(s) | 759 |
| Kzo9I | GATC | 7 cut(s) | 148, 187, 339, 393, 456, 759, 883 |
| LmnI | GCTCC | 7 cut(s) | 11, 130, 475, 506, 652, 688, 772 |
| Lsp1109I | GCAGC | 2 cut(s) | 112, 145 |
| LweI | GCATC | 2 cut(s) | 282, 539 |
| MaeII | ACGT | 1 cut(s) | 123 |
| MalI | GATC | 7 cut(s) | 150, 189, 341, 395, 458, 761, 885 |
| MboI | GATC | 7 cut(s) | 148, 187, 339, 393, 456, 759, 883 |
| MflI | RGATCY | 3 cut(s) | 148, 456, 883 |
| MluCI | AATT | 4 cut(s) | 242, 263, 493, 523 |
| Mly113I | GGCGCC | 1 cut(s) | 365 |
| MlyI | GAGTC | 1 cut(s) | 191 |
| MmeI | TCCRAC | 3 cut(s) | 90, 575, 708 |
| MroXI | GAANNNNTTC | 1 cut(s) | 242 |
| MslI | CAYNNNNRTG | 1 cut(s) | 965 |
| MspA1I | CMGCKG | 1 cut(s) | 703 |
| MspI | CCGG | 5 cut(s) | 32, 116, 170, 332, 516 |
| MspR9I | CCNGG | 2 cut(s) | 32, 170 |
| MvnI | CGCG | 2 cut(s) | 72, 81 |
| NarI | GGCGCC | 1 cut(s) | 365 |
| NciI | CCSGG | 2 cut(s) | 32, 170 |
| NdeII | GATC | 7 cut(s) | 148, 187, 339, 393, 456, 759, 883 |
| NlaIII | CATG | 1 cut(s) | 805 |
| NlaIV | GGNNCC | 9 cut(s) | 13, 114, 178, 330, 366, 458, 508, 690, 885 |
| NmeAIII | GCCGAG | 2 cut(s) | 349, 793 |
| NspV | TTCGAA | 2 cut(s) | 246, 521 |
| OliI | CACNNNNGTG | 1 cut(s) | 965 |
| PaeR7I | CTCGAG | 2 cut(s) | 233, 1007 |
| PceI | AGGCCT | 1 cut(s) | 89 |
| PdmI | GAANNNNTTC | 1 cut(s) | 242 |
| PfeI | GAWTC | 2 cut(s) | 229, 631 |
| PleI | GAGTC | 1 cut(s) | 191 |
| PluTI | GGCGCC | 1 cut(s) | 368 |
| PpsI | GAGTC | 1 cut(s) | 191 |
| Ppu21I | YACGTR | 1 cut(s) | 124 |
| PshAI | GACNNNNGTC | 1 cut(s) | 350 |
| PspFI | CCCAGC | 1 cut(s) | 544 |
| PspN4I | GGNNCC | 9 cut(s) | 13, 114, 178, 330, 366, 458, 508, 690, 885 |
| PspPI | GGNCC | 1 cut(s) | 589 |
| PsuI | RGATCY | 3 cut(s) | 148, 456, 883 |
| RsaI | GTAC | 4 cut(s) | 122, 611, 746, 948 |
| RsaNI | GTAC | 4 cut(s) | 121, 610, 745, 947 |
| RseI | CAYNNNNRTG | 1 cut(s) | 965 |
| Sau3AI | GATC | 7 cut(s) | 148, 187, 339, 393, 456, 759, 883 |
| Sau96I | GGNCC | 1 cut(s) | 589 |
| ScaI | AGTACT | 1 cut(s) | 611 |
| SchI | GAGTC | 1 cut(s) | 191 |
| ScrFI | CCNGG | 2 cut(s) | 32, 170 |
| SfaNI | GCATC | 2 cut(s) | 282, 539 |
| SfoI | GGCGCC | 1 cut(s) | 366 |
| Sfr274I | CTCGAG | 2 cut(s) | 233, 1007 |
| SfuI | TTCGAA | 2 cut(s) | 246, 521 |
| SinI | GGWCC | 1 cut(s) | 589 |
| SlaI | CTCGAG | 2 cut(s) | 233, 1007 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 965 |
| SmlI | CTYRAG | 2 cut(s) | 233, 1007 |
| SmoI | CTYRAG | 2 cut(s) | 233, 1007 |
| Sse9I | AATT | 4 cut(s) | 242, 263, 493, 523 |
| SseBI | AGGCCT | 1 cut(s) | 89 |
| SsiI | CCGC | 9 cut(s) | 35, 63, 98, 104, 161, 374, 530, 692, 701 |
| SspDI | GGCGCC | 1 cut(s) | 364 |
| StuI | AGGCCT | 1 cut(s) | 89 |
| StyD4I | CCNGG | 2 cut(s) | 30, 168 |
| TaaI | ACNGT | 4 cut(s) | 593, 614, 664, 946 |
| TaiI | ACGT | 1 cut(s) | 126 |
| TaqI | TCGA | 6 cut(s) | 227, 234, 246, 380, 521, 1008 |
| TaqII | GACCGA | 1 cut(s) | 323 |
| TasI | AATT | 4 cut(s) | 242, 263, 493, 523 |
| TatI | WGTACW | 3 cut(s) | 609, 744, 946 |
| TauI | GCSGC | 8 cut(s) | 38, 100, 106, 164, 376, 532, 694, 703 |
| TfiI | GAWTC | 2 cut(s) | 229, 631 |
| TscAI | CASTG | 1 cut(s) | 754 |
| TseI | GCWGC | 2 cut(s) | 100, 133 |
| TspDTI | ATGAA | 6 cut(s) | 458, 596, 614, 644, 790, 992 |
| TspRI | CASTG | 1 cut(s) | 754 |
| VpaK11BI | GGWCC | 1 cut(s) | 589 |
| XapI | RAATTY | 4 cut(s) | 242, 263, 493, 523 |
| XhoI | CTCGAG | 2 cut(s) | 233, 1007 |
| XmiI | GTMKAC | 1 cut(s) | 291 |
| XmnI | GAANNNNTTC | 1 cut(s) | 242 |
| ZrmI | AGTACT | 1 cut(s) | 611 |