FvH4_6g03560

No description available

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
Physical Location & Seq
Forward (+)
1955914 .. 1957486
1573 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g03560.t1

Sequence Viewer

Length: 1026 bp
ATGAGGAAAGGAGCCAAGCAAAAGGCTCGCCCGGCGGCGATGGAGGCCAAGCCCAAAGCCACCGCCACACGCGCCAAGCGCGTCAAGGCCTCTCAGCCGCAGCCGCAGTCGGAACCGGAGTACGTGGAGGAGCAGCGAAACCTTCAAGATCTATGGAAGGCGGCGTTCCCGGTCGGCACCGAGTGGGATCGCTTGGACTCACTCTACAAATACGACTGGGATTTCTCGAATCTCGAGAAGGAATTCGAAGAAGAAGGAGGCAAATTCCACGGCATCGGAAACAACAAGGTCTACCTCTTCAGCCAGACCGAGACTTCTTCGCCGTCGGTGCCGGTGCTGATCCCGACGCTGGTCGCCGTCGTGGCGCCTCGGCCGCCGTCGATGGAGATTGGGATCAGGTCTGTGCAGAGAGAGGAGAAGGAGATAGTTCCGATGAGGCAGATGAAGATGGATTGGATCCCTTACATTCCTCTGGAGCAAAGAGAAGGCTGGAATTCCGAGAGAGGAGCCAAGTCCGGTTCGAATTTGCCGCAGATTTTCGTGCTGGGATGCACGCAGAGGAAGGCGAGCTTGAAGCAGATGAAGGAGGACCGTTGGATGAAGTTCCAGTACTGTATGCCGTATTTGATGAATCCGAATGAGGAGGAGAAGGAGCAGACTACTGTGGTGGATATACTCTTCCCGAGGGAGCCGCAAGCGCCGCTGTTTGTGCAGTTTGATTGGGAGTTGGATGAGGTTGAGGAGTACACTGATGAGCTGATCAAGGCCGAGGAGCTGACTGAGGACAAGAAGGAGGCGTTCATGGCGTTTGTGAAGGAGGAAGTGAAGAAAGTGAAGAAGAAGATTAGGGAAGAGAAGGAAGCGAAGAAGAAGCTAATGGAGGATCCAAAGTATCAAGAAGCGAAAAGCTATTATGAGAGTATGAGGCTTTACAAGATTTATACAGTACAGACACCAAACACTCCTGTGATTGAGATGAAGTCTAAGGGAGGTTCAAGGGAGGTTCTCGAGGGGAGAGGAGGTTGA

Protein Analysis

342

Amino Acids

39.74

Weight (kDa)

6.24

Isoelectric Point (pI)

55.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000661)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G10010
fragaria_vesca FvH4_6g03222 FvH4_6g03560 FvH4_6g03561 FvH4_6g03563 FvH4_6g03590 FvH4_6g03590 FvH4_6g09260
malus_domestica MD04G1220200.v1.1 MD12G1240700.v1.1 MD15G1083500.v1.1
prunus_persica Prupe.1G436000_v2.0.a1 Prupe.6G174800_v2.0.a1 Prupe.6G339200_v2.0.a1
pyrus_communis pycom08g08260 pycom15g07800 pycom15g07810
rosa_chinensis RchiOBHm_Chr3g0451551 RchiOBHm_Chr3g0451591 RchiOBHm_Chr3g0451621 RchiOBHm_Chr3g0452131 RchiOBHm_Chr3g0459621
rosa_laevigata RLG00000025074 RLG00000025077 RLG00000025626 RLG00000029505 RLG00000035382 RLG00000035384
rosa_multiflora Rmu_co8173672.1_g000001 Rmu_sc0000240.1_g000011 Rmu_sc0000240.1_g000014 Rmu_sc0004924.1_g000012 Rmu_sc0004924.1_g000020 Rmu_sc0004924.1_g000023 Rmu_sc0004924.1_g000025 Rmu_sc0004924.1_g000034 Rmu_sc0004924.1_g000035 Rmu_sc0009360.1_g000006 Rmu_sc0009360.1_g000008 Rmu_sc0009360.1_g000014 Rmu_sc0009360.1_g000047 Rmu_sc0011887.1_g000001 Rmu_sc0015119.1_g000001 Rmu_sc0023706.1_g000002
rosa_roxburghii Rroxscaffold_164G00436050 Rroxscaffold_164G00436390 Rroxscaffold_164G00436450 Rroxscaffold_164G00436460 Rroxscaffold_4G00317080 Rroxscaffold_4G00317090 Rroxscaffold_6G00420140 Rroxscaffold_6G00428920
rosa_rugosa Rorug02G0634200 Rorug02G0634500 Rorug02G0634700 Rorug02G0635400 Rorug02G0638500 Rorug03G0036600 Rorug03G0036700
rosa_samantha Rh1BG103700 Rh1BG103800 Rh3AG040400 Rh3BG037900 Rh3BG038200 Rh3BG041900 Rh3BG097900 Rh3CG036600 Rh3CG040300 Rh3DG037300 Rh3DG037500 Rh3DG041200 Rh3DG099300
rosa_wichuraiana Rw0G013830 Rw0G017580 Rw0G017600 Rw3G003070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 3 cut(s) 176, 328, 364
AccI GTMKAC 1 cut(s) 291
AccII CGCG 2 cut(s) 72, 81
AciI CCGC 9 cut(s) 35, 63, 98, 104, 161, 374, 530, 692, 701
AclWI GGATC 7 cut(s) 195, 334, 401, 451, 464, 878, 891
AcoI YGGCCR 1 cut(s) 371
AcsI RAATTY 4 cut(s) 242, 263, 493, 523
AcuI CTGAAG 1 cut(s) 283
AcyI GRCGYC 1 cut(s) 365
AdeI CACNNNGTG 1 cut(s) 183
AfaI GTAC 4 cut(s) 122, 611, 746, 948
AfiI CCNNNNNNNGG 1 cut(s) 349
AgsI TTSAA 3 cut(s) 146, 574, 996
AleI CACNNNNGTG 1 cut(s) 965
AluBI AGCT 5 cut(s) 570, 757, 775, 874, 909
AluI AGCT 5 cut(s) 570, 757, 775, 874, 909
Alw26I GTCTC 1 cut(s) 305
AlwI GGATC 7 cut(s) 195, 334, 401, 451, 464, 878, 891
Ama87I CYCGRG 3 cut(s) 233, 682, 1007
AoxI GGCC 4 cut(s) 45, 87, 371, 765
ApeKI GCWGC 2 cut(s) 100, 133
ApoI RAATTY 4 cut(s) 242, 263, 493, 523
Asp700I GAANNNNTTC 1 cut(s) 242
AspLEI GCGC 4 cut(s) 74, 81, 367, 700
AspS9I GGNCC 1 cut(s) 589
AsuC2I CCSGG 2 cut(s) 32, 170
AsuII TTCGAA 2 cut(s) 246, 521
AvaI CYCGRG 3 cut(s) 233, 682, 1007
AvaII GGWCC 1 cut(s) 589
BamHI GGATCC 2 cut(s) 456, 883
BanI GGYRCC 3 cut(s) 176, 328, 364
BarI GAAGNNNNNNTAC 2 cut(s) 593, 625
BbvI GCAGC 2 cut(s) 112, 145
BccI CCATC 3 cut(s) 34, 376, 442
BceAI ACGGC 5 cut(s) 286, 307, 341, 361, 604
BcgI CGANNNNNNTGC 2 cut(s) 8, 42
BclI TGATCA 1 cut(s) 759
BcnI CCSGG 2 cut(s) 32, 170
BcoDI GTCTC 1 cut(s) 305
BfoI RGCGCY 2 cut(s) 368, 701
BglI GCCNNNNNGGC 1 cut(s) 362
BglII AGATCT 1 cut(s) 148
BmcAI AGTACT 1 cut(s) 611
Bme1390I CCNGG 2 cut(s) 32, 170
Bme18I GGWCC 1 cut(s) 589
BmeT110I CYCGRG 3 cut(s) 233, 682, 1007
BmgT120I GGNCC 1 cut(s) 589
BmiI GGNNCC 9 cut(s) 13, 114, 178, 330, 366, 458, 508, 690, 885
BmrFI CCNGG 2 cut(s) 32, 170
BmrI ACTGGG 1 cut(s) 226
BmsI GCATC 2 cut(s) 282, 539
BmuI ACTGGG 1 cut(s) 226
BoxI GACNNNNGTC 1 cut(s) 350
BpmI CTGGAG 1 cut(s) 494
Bpu14I TTCGAA 2 cut(s) 246, 521
BpuMI CCSGG 2 cut(s) 32, 170
BsaAI YACGTR 1 cut(s) 124
BsaBI GATNNNNATC 1 cut(s) 392
BsaHI GRCGYC 1 cut(s) 365
BsaJI CCNNGG 4 cut(s) 268, 368, 683, 768
BsaWI WCCGGW 2 cut(s) 115, 515
BsaXI ACNNNNNCTCC 1 cut(s) 1006
Bsc4I CCNNNNNNNGG 1 cut(s) 349
Bse118I RCCGGY 1 cut(s) 331
Bse1I ACTGG 2 cut(s) 221, 607
Bse8I GATNNNNATC 1 cut(s) 392
BseDI CCNNGG 4 cut(s) 268, 368, 683, 768
BseGI GGATG 3 cut(s) 554, 603, 736
BseJI GATNNNNATC 1 cut(s) 392
BseLI CCNNNNNNNGG 1 cut(s) 349
BseMII CTCAG 2 cut(s) 107, 771
BseNI ACTGG 2 cut(s) 221, 607
BseRI GAGGAG 7 cut(s) 143, 428, 519, 656, 659, 755, 785
BseX3I CGGCCG 1 cut(s) 371
BseXI GCAGC 2 cut(s) 112, 145
BseYI CCCAGC 1 cut(s) 544
BsgI GTGCAG 2 cut(s) 425, 731
Bsh1236I CGCG 2 cut(s) 72, 81
Bsh1285I CGRYCG 2 cut(s) 174, 374
BshFI GGCC 4 cut(s) 47, 89, 373, 767
BshNI GGYRCC 3 cut(s) 176, 328, 364
BsiEI CGRYCG 2 cut(s) 174, 374
BsiHKCI CYCGRG 3 cut(s) 233, 682, 1007
BsiSI CCGG 5 cut(s) 32, 116, 170, 332, 516
BslI CCNNNNNNNGG 1 cut(s) 349
BsmAI GTCTC 1 cut(s) 305
BsnI GGCC 4 cut(s) 47, 89, 373, 767
BsoBI CYCGRG 3 cut(s) 233, 682, 1007
Bsp119I TTCGAA 2 cut(s) 246, 521
Bsp143I GATC 7 cut(s) 148, 187, 339, 393, 456, 759, 883
BspACI CCGC 9 cut(s) 35, 63, 98, 104, 161, 374, 530, 692, 701
BspANI GGCC 4 cut(s) 47, 89, 373, 767
BspCNI CTCAG 2 cut(s) 106, 772
BspFNI CGCG 2 cut(s) 72, 81
BspLI GGNNCC 9 cut(s) 13, 114, 178, 330, 366, 458, 508, 690, 885
BspPI GGATC 7 cut(s) 195, 334, 401, 451, 464, 878, 891
BspT104I TTCGAA 2 cut(s) 246, 521
BspT107I GGYRCC 3 cut(s) 176, 328, 364
BsrFI RCCGGY 1 cut(s) 331
BsrI ACTGG 2 cut(s) 221, 607
BssAI RCCGGY 1 cut(s) 331
BssECI CCNNGG 4 cut(s) 268, 368, 683, 768
BssMI GATC 7 cut(s) 148, 187, 339, 393, 456, 759, 883
BssNI GRCGYC 1 cut(s) 365
Bst4CI ACNGT 4 cut(s) 593, 614, 664, 946
Bst6I CTCTTC 3 cut(s) 302, 683, 846
BstACI GRCGYC 1 cut(s) 365
BstBAI YACGTR 1 cut(s) 124
BstBI TTCGAA 2 cut(s) 246, 521
BstC8I GCNNGC 4 cut(s) 28, 554, 568, 696
BstDEI CTNAG 3 cut(s) 93, 780, 984
BstDSI CCRYGG 1 cut(s) 268
BstF5I GGATG 3 cut(s) 554, 603, 736
BstFNI CGCG 2 cut(s) 72, 81
BstH2I RGCGCY 2 cut(s) 368, 701
BstHHI GCGC 4 cut(s) 74, 81, 367, 700
BstKTI GATC 7 cut(s) 151, 190, 342, 396, 459, 762, 886
BstMAI GTCTC 1 cut(s) 305
BstMBI GATC 7 cut(s) 148, 187, 339, 393, 456, 759, 883
BstMCI CGRYCG 2 cut(s) 174, 374
BstPAI GACNNNNGTC 1 cut(s) 350
BstSCI CCNGG 2 cut(s) 30, 168
BstUI CGCG 2 cut(s) 72, 81
BstV1I GCAGC 2 cut(s) 112, 145
BstX2I RGATCY 3 cut(s) 148, 456, 883
BstYI RGATCY 3 cut(s) 148, 456, 883
BstZI CGGCCG 1 cut(s) 371
BsuRI GGCC 4 cut(s) 47, 89, 373, 767
BtgI CCRYGG 1 cut(s) 268
BtgZI GCGATG 1 cut(s) 53
BtsCI GGATG 3 cut(s) 554, 603, 736
BtsIMutI CAGTG 1 cut(s) 747
Cac8I GCNNGC 4 cut(s) 28, 554, 568, 696
CfoI GCGC 4 cut(s) 74, 81, 367, 700
Cfr10I RCCGGY 1 cut(s) 331
Cfr13I GGNCC 1 cut(s) 589
CseI GACGC 2 cut(s) 70, 355
Csp6I GTAC 4 cut(s) 121, 610, 745, 947
CviAII CATG 1 cut(s) 802
CviQI GTAC 4 cut(s) 121, 610, 745, 947
DdeI CTNAG 3 cut(s) 93, 780, 984
DinI GGCGCC 1 cut(s) 366
DpnI GATC 7 cut(s) 150, 189, 341, 395, 458, 761, 885
DpnII GATC 7 cut(s) 148, 187, 339, 393, 456, 759, 883
DraIII CACNNNGTG 1 cut(s) 183
EaeI YGGCCR 1 cut(s) 371
EagI CGGCCG 1 cut(s) 371
Eam1104I CTCTTC 3 cut(s) 302, 683, 846
EarI CTCTTC 3 cut(s) 302, 683, 846
EclXI CGGCCG 1 cut(s) 371
Eco147I AGGCCT 1 cut(s) 89
Eco47I GGWCC 1 cut(s) 589
Eco52I CGGCCG 1 cut(s) 371
Eco57I CTGAAG 1 cut(s) 283
Eco88I CYCGRG 3 cut(s) 233, 682, 1007
EcoRI GAATTC 2 cut(s) 242, 493
EgeI GGCGCC 1 cut(s) 366
EheI GGCGCC 1 cut(s) 366
FaeI CATG 1 cut(s) 805
FaiI YATR 7 cut(s) 154, 617, 674, 803, 915, 923, 942
FalI AAGNNNNNCTT 2 cut(s) 554, 586
FatI CATG 1 cut(s) 801
FbaI TGATCA 1 cut(s) 759
FblI GTMKAC 1 cut(s) 291
FokI GGATG 3 cut(s) 561, 610, 743
GlaI GCGC 4 cut(s) 73, 80, 366, 699
GsaI CCCAGC 1 cut(s) 548
GsuI CTGGAG 1 cut(s) 494
HaeII RGCGCY 2 cut(s) 368, 701
HaeIII GGCC 4 cut(s) 47, 89, 373, 767
HapII CCGG 5 cut(s) 32, 116, 170, 332, 516
HgaI GACGC 2 cut(s) 70, 355
HhaI GCGC 4 cut(s) 74, 81, 367, 700
Hin1I GRCGYC 1 cut(s) 365
Hin1II CATG 1 cut(s) 805
Hin6I GCGC 4 cut(s) 72, 79, 365, 698
HinP1I GCGC 4 cut(s) 72, 79, 365, 698
HinfI GANTC 3 cut(s) 197, 229, 631
HpaII CCGG 5 cut(s) 32, 116, 170, 332, 516
Hpy166II GTNNAC 2 cut(s) 292, 747
Hpy188I TCNGA 5 cut(s) 112, 278, 432, 499, 636
Hpy188III TCNNGA 9 cut(s) 146, 226, 233, 235, 343, 473, 682, 896, 1007
Hpy8I GTNNAC 2 cut(s) 292, 747
Hpy99I CGWCG 4 cut(s) 328, 349, 362, 382
HpyCH4III ACNGT 4 cut(s) 593, 614, 664, 946
HpyCH4IV ACGT 1 cut(s) 123
HpyCH4V TGCA 3 cut(s) 406, 552, 712
HpyF3I CTNAG 3 cut(s) 93, 780, 984
HpySE526I ACGT 1 cut(s) 123
Hsp92I GRCGYC 1 cut(s) 365
Hsp92II CATG 1 cut(s) 805
HspAI GCGC 4 cut(s) 72, 79, 365, 698
KasI GGCGCC 1 cut(s) 364
Ksp22I TGATCA 1 cut(s) 759
Kzo9I GATC 7 cut(s) 148, 187, 339, 393, 456, 759, 883
LmnI GCTCC 7 cut(s) 11, 130, 475, 506, 652, 688, 772
Lsp1109I GCAGC 2 cut(s) 112, 145
LweI GCATC 2 cut(s) 282, 539
MaeII ACGT 1 cut(s) 123
MalI GATC 7 cut(s) 150, 189, 341, 395, 458, 761, 885
MboI GATC 7 cut(s) 148, 187, 339, 393, 456, 759, 883
MflI RGATCY 3 cut(s) 148, 456, 883
MluCI AATT 4 cut(s) 242, 263, 493, 523
Mly113I GGCGCC 1 cut(s) 365
MlyI GAGTC 1 cut(s) 191
MmeI TCCRAC 3 cut(s) 90, 575, 708
MroXI GAANNNNTTC 1 cut(s) 242
MslI CAYNNNNRTG 1 cut(s) 965
MspA1I CMGCKG 1 cut(s) 703
MspI CCGG 5 cut(s) 32, 116, 170, 332, 516
MspR9I CCNGG 2 cut(s) 32, 170
MvnI CGCG 2 cut(s) 72, 81
NarI GGCGCC 1 cut(s) 365
NciI CCSGG 2 cut(s) 32, 170
NdeII GATC 7 cut(s) 148, 187, 339, 393, 456, 759, 883
NlaIII CATG 1 cut(s) 805
NlaIV GGNNCC 9 cut(s) 13, 114, 178, 330, 366, 458, 508, 690, 885
NmeAIII GCCGAG 2 cut(s) 349, 793
NspV TTCGAA 2 cut(s) 246, 521
OliI CACNNNNGTG 1 cut(s) 965
PaeR7I CTCGAG 2 cut(s) 233, 1007
PceI AGGCCT 1 cut(s) 89
PdmI GAANNNNTTC 1 cut(s) 242
PfeI GAWTC 2 cut(s) 229, 631
PleI GAGTC 1 cut(s) 191
PluTI GGCGCC 1 cut(s) 368
PpsI GAGTC 1 cut(s) 191
Ppu21I YACGTR 1 cut(s) 124
PshAI GACNNNNGTC 1 cut(s) 350
PspFI CCCAGC 1 cut(s) 544
PspN4I GGNNCC 9 cut(s) 13, 114, 178, 330, 366, 458, 508, 690, 885
PspPI GGNCC 1 cut(s) 589
PsuI RGATCY 3 cut(s) 148, 456, 883
RsaI GTAC 4 cut(s) 122, 611, 746, 948
RsaNI GTAC 4 cut(s) 121, 610, 745, 947
RseI CAYNNNNRTG 1 cut(s) 965
Sau3AI GATC 7 cut(s) 148, 187, 339, 393, 456, 759, 883
Sau96I GGNCC 1 cut(s) 589
ScaI AGTACT 1 cut(s) 611
SchI GAGTC 1 cut(s) 191
ScrFI CCNGG 2 cut(s) 32, 170
SfaNI GCATC 2 cut(s) 282, 539
SfoI GGCGCC 1 cut(s) 366
Sfr274I CTCGAG 2 cut(s) 233, 1007
SfuI TTCGAA 2 cut(s) 246, 521
SinI GGWCC 1 cut(s) 589
SlaI CTCGAG 2 cut(s) 233, 1007
SmiMI CAYNNNNRTG 1 cut(s) 965
SmlI CTYRAG 2 cut(s) 233, 1007
SmoI CTYRAG 2 cut(s) 233, 1007
Sse9I AATT 4 cut(s) 242, 263, 493, 523
SseBI AGGCCT 1 cut(s) 89
SsiI CCGC 9 cut(s) 35, 63, 98, 104, 161, 374, 530, 692, 701
SspDI GGCGCC 1 cut(s) 364
StuI AGGCCT 1 cut(s) 89
StyD4I CCNGG 2 cut(s) 30, 168
TaaI ACNGT 4 cut(s) 593, 614, 664, 946
TaiI ACGT 1 cut(s) 126
TaqI TCGA 6 cut(s) 227, 234, 246, 380, 521, 1008
TaqII GACCGA 1 cut(s) 323
TasI AATT 4 cut(s) 242, 263, 493, 523
TatI WGTACW 3 cut(s) 609, 744, 946
TauI GCSGC 8 cut(s) 38, 100, 106, 164, 376, 532, 694, 703
TfiI GAWTC 2 cut(s) 229, 631
TscAI CASTG 1 cut(s) 754
TseI GCWGC 2 cut(s) 100, 133
TspDTI ATGAA 6 cut(s) 458, 596, 614, 644, 790, 992
TspRI CASTG 1 cut(s) 754
VpaK11BI GGWCC 1 cut(s) 589
XapI RAATTY 4 cut(s) 242, 263, 493, 523
XhoI CTCGAG 2 cut(s) 233, 1007
XmiI GTMKAC 1 cut(s) 291
XmnI GAANNNNTTC 1 cut(s) 242
ZrmI AGTACT 1 cut(s) 611
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.