FvH4_6g03561

No description available

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
Physical Location & Seq
Forward (+)
1958403 .. 1959226
824 bp
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UTR
Exon/CDS
Intron
FvH4_6g03561.t1

Sequence Viewer

Length: 522 bp
ATGAAACACACCGACTACGACATGGGGAAGACTTCAGACTTCAGAGTCAAGCCAACCACAATTCTCTTGAAGTCCTTCCCACATTTTCCGCTTCCAGTCCCTCCACTTTTCCACAAGCCATTATCTCAGACAACAAAGTTTCCTATTCTGTGCTTTATTGCTTTGGAGATTGCGTTCAGGTCTGTGCAGAGAGGAGAGAAGGAGATAGTTCCGATGAGTGAGATGAATATGGATTGGTTTCCCTGCATTCGTTTGAATTTGCCTCAGATATTCGTGCTGGTATGCACACAGATGAGGCAGGAACGTCGGATGCAATACCTGTTCTGTATGCCGTATTTGATGAATCCGAATAATCAAGATGAGAAGGAGCAGGAGGATCCAAAGTATCAGGAAGCGAAAGCCTATTATGAGAGCATGAGGCTTTACAAGATTTATCCACAACAAACACCAAACCCTCCTGTGATAGAGATCCAGTCTAAGTACATCAACTTCTACTATGGAGAAGCGCATGAGATTATTTGA

Protein Analysis

174

Amino Acids

20.71

Weight (kDa)

7.65

Isoelectric Point (pI)

59.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000661)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G10010
fragaria_vesca FvH4_6g03222 FvH4_6g03560 FvH4_6g03561 FvH4_6g03563 FvH4_6g03590 FvH4_6g03590 FvH4_6g09260
malus_domestica MD04G1220200.v1.1 MD12G1240700.v1.1 MD15G1083500.v1.1
prunus_persica Prupe.1G436000_v2.0.a1 Prupe.6G174800_v2.0.a1 Prupe.6G339200_v2.0.a1
pyrus_communis pycom08g08260 pycom15g07800 pycom15g07810
rosa_chinensis RchiOBHm_Chr3g0451551 RchiOBHm_Chr3g0451591 RchiOBHm_Chr3g0451621 RchiOBHm_Chr3g0452131 RchiOBHm_Chr3g0459621
rosa_laevigata RLG00000025074 RLG00000025077 RLG00000025626 RLG00000029505 RLG00000035382 RLG00000035384
rosa_multiflora Rmu_co8173672.1_g000001 Rmu_sc0000240.1_g000011 Rmu_sc0000240.1_g000014 Rmu_sc0004924.1_g000012 Rmu_sc0004924.1_g000020 Rmu_sc0004924.1_g000023 Rmu_sc0004924.1_g000025 Rmu_sc0004924.1_g000034 Rmu_sc0004924.1_g000035 Rmu_sc0009360.1_g000006 Rmu_sc0009360.1_g000008 Rmu_sc0009360.1_g000014 Rmu_sc0009360.1_g000047 Rmu_sc0011887.1_g000001 Rmu_sc0015119.1_g000001 Rmu_sc0023706.1_g000002
rosa_roxburghii Rroxscaffold_164G00436050 Rroxscaffold_164G00436390 Rroxscaffold_164G00436450 Rroxscaffold_164G00436460 Rroxscaffold_4G00317080 Rroxscaffold_4G00317090 Rroxscaffold_6G00420140 Rroxscaffold_6G00428920
rosa_rugosa Rorug02G0634200 Rorug02G0634500 Rorug02G0634700 Rorug02G0635400 Rorug02G0638500 Rorug03G0036600 Rorug03G0036700
rosa_samantha Rh1BG103700 Rh1BG103800 Rh3AG040400 Rh3BG037900 Rh3BG038200 Rh3BG041900 Rh3BG097900 Rh3CG036600 Rh3CG040300 Rh3DG037300 Rh3DG037500 Rh3DG041200 Rh3DG099300
rosa_wichuraiana Rw0G013830 Rw0G017580 Rw0G017600 Rw3G003070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 44
AciI CCGC 1 cut(s) 89
AclWI GGATC 3 cut(s) 371, 384, 463
AcsI RAATTY 1 cut(s) 256
AcuI CTGAAG 2 cut(s) 18, 25
AfaI GTAC 1 cut(s) 482
AgsI TTSAA 2 cut(s) 70, 256
AloI GAACNNNNNNTCC 2 cut(s) 158, 190
AlwI GGATC 3 cut(s) 371, 384, 463
ApoI RAATTY 1 cut(s) 256
Asp700I GAANNNNTTC 1 cut(s) 74
AspLEI GCGC 1 cut(s) 508
BamHI GGATCC 1 cut(s) 376
BarI GAAGNNNNNNTAC 2 cut(s) 473, 505
BbsI GAAGAC 1 cut(s) 35
BceAI ACGGC 1 cut(s) 316
BcgI CGANNNNNNTGC 2 cut(s) 287, 321
BmiI GGNNCC 1 cut(s) 378
BmsI GCATC 1 cut(s) 300
BpiI GAAGAC 1 cut(s) 35
BsaBI GATNNNNATC 1 cut(s) 467
BsaXI ACNNNNNCTCC 2 cut(s) 158, 188
Bse1I ACTGG 2 cut(s) 95, 472
Bse8I GATNNNNATC 1 cut(s) 467
BseGI GGATG 1 cut(s) 315
BseJI GATNNNNATC 1 cut(s) 467
BseMII CTCAG 2 cut(s) 140, 278
BseNI ACTGG 2 cut(s) 95, 472
BseRI GAGGAG 1 cut(s) 207
BsgI GTGCAG 1 cut(s) 206
BslFI GGGAC 1 cut(s) 83
BsmFI GGGAC 1 cut(s) 83
BsmI GAATGC 1 cut(s) 246
Bsp143I GATC 2 cut(s) 376, 468
BspACI CCGC 1 cut(s) 89
BspCNI CTCAG 2 cut(s) 139, 277
BspLI GGNNCC 1 cut(s) 378
BspPI GGATC 3 cut(s) 371, 384, 463
BsrI ACTGG 2 cut(s) 95, 472
BssMI GATC 2 cut(s) 376, 468
BstDEI CTNAG 3 cut(s) 126, 264, 477
BstF5I GGATG 1 cut(s) 315
BstHHI GCGC 1 cut(s) 508
BstKTI GATC 2 cut(s) 379, 471
BstMBI GATC 2 cut(s) 376, 468
BstV2I GAAGAC 1 cut(s) 35
BstX2I RGATCY 2 cut(s) 376, 468
BstYI RGATCY 2 cut(s) 376, 468
BtsCI GGATG 1 cut(s) 315
CfoI GCGC 1 cut(s) 508
Csp6I GTAC 1 cut(s) 481
CviAII CATG 3 cut(s) 22, 415, 509
CviJI RGCY 4 cut(s) 52, 118, 401, 421
CviKI_1 RGCY 4 cut(s) 52, 118, 401, 421
CviQI GTAC 1 cut(s) 481
DdeI CTNAG 3 cut(s) 126, 264, 477
DpnI GATC 2 cut(s) 378, 470
DpnII GATC 2 cut(s) 376, 468
DrdI GACNNNNNNGTC 1 cut(s) 44
DseDI GACNNNNNNGTC 1 cut(s) 44
Eco57I CTGAAG 2 cut(s) 18, 25
FaeI CATG 3 cut(s) 25, 418, 512
FaiI YATR 8 cut(s) 23, 230, 283, 329, 408, 416, 498, 510
FaqI GGGAC 1 cut(s) 83
FatI CATG 3 cut(s) 21, 414, 508
FokI GGATG 1 cut(s) 322
GlaI GCGC 1 cut(s) 507
HhaI GCGC 1 cut(s) 508
Hin1II CATG 3 cut(s) 25, 418, 512
Hin6I GCGC 1 cut(s) 506
HinP1I GCGC 1 cut(s) 506
HinfI GANTC 2 cut(s) 45, 343
Hpy188I TCNGA 7 cut(s) 37, 44, 129, 213, 267, 309, 348
Hpy188III TCNNGA 3 cut(s) 67, 356, 389
Hpy99I CGWCG 1 cut(s) 309
HpyAV CCTTC 3 cut(s) 85, 193, 358
HpyCH4IV ACGT 1 cut(s) 304
HpyCH4V TGCA 4 cut(s) 187, 246, 285, 313
HpyF3I CTNAG 3 cut(s) 126, 264, 477
HpySE526I ACGT 1 cut(s) 304
Hsp92II CATG 3 cut(s) 25, 418, 512
HspAI GCGC 1 cut(s) 506
Kzo9I GATC 2 cut(s) 376, 468
LmnI GCTCC 1 cut(s) 367
LweI GCATC 1 cut(s) 300
MaeII ACGT 1 cut(s) 304
MalI GATC 2 cut(s) 378, 470
MboI GATC 2 cut(s) 376, 468
MboII GAAGA 1 cut(s) 40
MflI RGATCY 2 cut(s) 376, 468
MluCI AATT 2 cut(s) 60, 256
MlyI GAGTC 1 cut(s) 54
MmeI TCCRAC 1 cut(s) 287
MnlI CCTC 7 cut(s) 111, 185, 273, 288, 367, 411, 465
MroXI GAANNNNTTC 1 cut(s) 74
MslI CAYNNNNRTG 1 cut(s) 290
Mva1269I GAATGC 1 cut(s) 246
NdeII GATC 2 cut(s) 376, 468
NlaIII CATG 3 cut(s) 25, 418, 512
NlaIV GGNNCC 1 cut(s) 378
PctI GAATGC 1 cut(s) 246
PdmI GAANNNNTTC 1 cut(s) 74
PfeI GAWTC 1 cut(s) 343
PleI GAGTC 1 cut(s) 53
PpsI GAGTC 1 cut(s) 53
PspN4I GGNNCC 1 cut(s) 378
PsuI RGATCY 2 cut(s) 376, 468
RsaI GTAC 1 cut(s) 482
RsaNI GTAC 1 cut(s) 481
RseI CAYNNNNRTG 1 cut(s) 290
Sau3AI GATC 2 cut(s) 376, 468
SchI GAGTC 1 cut(s) 54
SetI ASST 3 cut(s) 182, 307, 321
SfaNI GCATC 1 cut(s) 300
SmiMI CAYNNNNRTG 1 cut(s) 290
Sse9I AATT 2 cut(s) 60, 256
SsiI CCGC 1 cut(s) 89
TaiI ACGT 1 cut(s) 307
TasI AATT 2 cut(s) 60, 256
TatI WGTACW 1 cut(s) 480
TfiI GAWTC 1 cut(s) 343
TspDTI ATGAA 3 cut(s) 17, 239, 356
XapI RAATTY 1 cut(s) 256
XmnI GAANNNNTTC 1 cut(s) 74
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.