Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000661

Physical Location & Seq

Genomic Coordinates Reverse (-)

2626270 .. 2626563

Gene Structure 294 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ41886

Sequence Viewer

CDS Protein Promoter (2k)

Length: 294 bp

ATGCAGAGAAAGGCGTTGAGGGAACTAGAGGTTGAAACCGCCGTTCAGCCACCACGAAAGCGGCACAAGCCCCGACCTGCTGAGTACTTGGAGAAGCCCCGGAGCCTAGAGGGTCTATGGAAGGCTGCCTTTCTTGCTGGGACATCGAGGTCCCTTTTGGACTCGCCACTCTACCATTCTTTCAAGTGGGATTTCTCGAATCTTGAAGGAGCACTCGAAGAAGGGGGAAAGCTGTACAAGAAGAGCAAAAGAGTCTATCTATTCGGCTCCACGCGCGGAGGAGGCCATGGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005730 GO:0006950 GO:0007088 GO:0007346 GO:0008150 GO:0009266 GO:0009408 GO:0009628 GO:0009893 GO:0010286 GO:0010369 GO:0010468 GO:0010564 GO:0010604 GO:0010628 GO:0019222 GO:0031974 GO:0031981 GO:0033043 GO:0033044 GO:0033045 GO:0033047 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044464 GO:0048518 GO:0048519 GO:0048523 GO:0048583 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051726 GO:0051783 GO:0051983 GO:0060255 GO:0060968 GO:0060969 GO:0065007 GO:0070013 GO:0080134 GO:0080135 GO:0098687 GO:1900034 GO:1901651

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

97

Amino Acids

11.04

Weight (kDa)

9.99

Isoelectric Point (pI)

46.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000661)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G10010
fragaria_vesca	FvH4_6g03222 FvH4_6g03560 FvH4_6g03561 FvH4_6g03563 FvH4_6g03590 FvH4_6g03590 FvH4_6g09260
malus_domestica	MD04G1220200.v1.1 MD12G1240700.v1.1 MD15G1083500.v1.1
prunus_persica	Prupe.1G436000_v2.0.a1 Prupe.6G174800_v2.0.a1 Prupe.6G339200_v2.0.a1
pyrus_communis	pycom08g08260 pycom15g07800 pycom15g07810
rosa_chinensis	RchiOBHm_Chr3g0451551 RchiOBHm_Chr3g0451591 RchiOBHm_Chr3g0451621 RchiOBHm_Chr3g0452131 RchiOBHm_Chr3g0459621
rosa_laevigata	RLG00000025074 RLG00000025077 RLG00000025626 RLG00000029505 RLG00000035382 RLG00000035384
rosa_multiflora	Rmu_co8173672.1_g000001 Rmu_sc0000240.1_g000011 Rmu_sc0000240.1_g000014 Rmu_sc0004924.1_g000012 Rmu_sc0004924.1_g000020 Rmu_sc0004924.1_g000023 Rmu_sc0004924.1_g000025 Rmu_sc0004924.1_g000034 Rmu_sc0004924.1_g000035 Rmu_sc0009360.1_g000006 Rmu_sc0009360.1_g000008 Rmu_sc0009360.1_g000014 Rmu_sc0009360.1_g000047 Rmu_sc0011887.1_g000001 Rmu_sc0015119.1_g000001 Rmu_sc0023706.1_g000002
rosa_roxburghii	Rroxscaffold_164G00436050 Rroxscaffold_164G00436390 Rroxscaffold_164G00436450 Rroxscaffold_164G00436460 Rroxscaffold_4G00317080 Rroxscaffold_4G00317090 Rroxscaffold_6G00420140 Rroxscaffold_6G00428920
rosa_rugosa	Rorug02G0634200 Rorug02G0634500 Rorug02G0634700 Rorug02G0635400 Rorug02G0638500 Rorug03G0036600 Rorug03G0036700
rosa_samantha	Rh1BG103700 Rh1BG103800 Rh3AG040400 Rh3BG037900 Rh3BG038200 Rh3BG041900 Rh3BG097900 Rh3CG036600 Rh3CG040300 Rh3DG037300 Rh3DG037500 Rh3DG041200 Rh3DG099300
rosa_wichuraiana	Rw0G013830 Rw0G017580 Rw0G017600 Rw3G003070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	148
Acc36I	ACCTGC	1 cut(s)	85
AccII	CGCG	2 cut(s)	274, 276
AciI	CCGC	3 cut(s)	39, 61, 276
AfaI	GTAC	2 cut(s)	86, 236
AgsI	TTSAA	3 cut(s)	35, 184, 206
AluBI	AGCT	1 cut(s)	232
AluI	AGCT	1 cut(s)	232
Alw21I	GWGCWC	1 cut(s)	214
AoxI	GGCC	1 cut(s)	283
ApeKI	GCWGC	1 cut(s)	125
AspLEI	GCGC	1 cut(s)	276
AspS9I	GGNCC	1 cut(s)	150
AsuC2I	CCSGG	1 cut(s)	100
AvaII	GGWCC	1 cut(s)	150
Bbv12I	GWGCWC	1 cut(s)	214
BbvI	GCAGC	1 cut(s)	112
BceAI	ACGGC	1 cut(s)	26
BcnI	CCSGG	1 cut(s)	100
BfaI	CTAG	2 cut(s)	26, 107
BfuAI	ACCTGC	1 cut(s)	85
BisI	GCNGC	2 cut(s)	62, 126
BlsI	GCNGC	2 cut(s)	63, 127
BmcAI	AGTACT	1 cut(s)	86
Bme1390I	CCNGG	1 cut(s)	100
Bme18I	GGWCC	1 cut(s)	150
BmgT120I	GGNCC	1 cut(s)	150
BmiI	GGNNCC	3 cut(s)	104, 152, 268
BmrFI	CCNGG	1 cut(s)	100
BpuMI	CCSGG	1 cut(s)	100
BsaJI	CCNNGG	2 cut(s)	98, 286
BseDI	CCNNGG	2 cut(s)	98, 286
BseMII	CTCAG	1 cut(s)	72
BseRI	GAGGAG	1 cut(s)	294
BseXI	GCAGC	1 cut(s)	112
BseYI	CCCAGC	1 cut(s)	137
Bsh1236I	CGCG	2 cut(s)	274, 276
BshFI	GGCC	1 cut(s)	285
BsiHKAI	GWGCWC	1 cut(s)	214
BsiSI	CCGG	1 cut(s)	100
BslFI	GGGAC	2 cut(s)	136, 154
BsmFI	GGGAC	2 cut(s)	136, 154
BsnI	GGCC	1 cut(s)	285
Bsp1286I	GDGCHC	1 cut(s)	214
Bsp1407I	TGTACA	1 cut(s)	234
Bsp19I	CCATGG	1 cut(s)	286
BspACI	CCGC	3 cut(s)	39, 61, 276
BspANI	GGCC	1 cut(s)	285
BspCNI	CTCAG	1 cut(s)	73
BspFNI	CGCG	2 cut(s)	274, 276
BspLI	GGNNCC	3 cut(s)	104, 152, 268
BspMI	ACCTGC	1 cut(s)	85
BspQI	GCTCTTC	1 cut(s)	236
BsrGI	TGTACA	1 cut(s)	234
BssECI	CCNNGG	2 cut(s)	98, 286
BssT1I	CCWWGG	1 cut(s)	286
Bst6I	CTCTTC	1 cut(s)	236
BstAUI	TGTACA	1 cut(s)	234
BstDEI	CTNAG	1 cut(s)	81
BstDSI	CCRYGG	1 cut(s)	286
BstFNI	CGCG	2 cut(s)	274, 276
BstHHI	GCGC	1 cut(s)	276
BstMWI	GCNNNNNNNGC	4 cut(s)	67, 134, 273, 282
BstSCI	CCNGG	1 cut(s)	98
BstUI	CGCG	2 cut(s)	274, 276
BstV1I	GCAGC	1 cut(s)	112
BsuRI	GGCC	1 cut(s)	285
BtgI	CCRYGG	1 cut(s)	286
BveI	ACCTGC	1 cut(s)	85
CfoI	GCGC	1 cut(s)	276
Cfr13I	GGNCC	1 cut(s)	150
Csp6I	GTAC	2 cut(s)	85, 235
CviAII	CATG	1 cut(s)	287
CviJI	RGCY	8 cut(s)	49, 70, 97, 105, 125, 232, 267, 285
CviKI_1	RGCY	8 cut(s)	49, 70, 97, 105, 125, 232, 267, 285
CviQI	GTAC	2 cut(s)	85, 235
DdeI	CTNAG	1 cut(s)	81
DrdI	GACNNNNNNGTC	1 cut(s)	148
DseDI	GACNNNNNNGTC	1 cut(s)	148
Eam1104I	CTCTTC	1 cut(s)	236
EarI	CTCTTC	1 cut(s)	236
Eco130I	CCWWGG	1 cut(s)	286
Eco47I	GGWCC	1 cut(s)	150
EcoO109I	RGGNCCY	1 cut(s)	150
EcoT14I	CCWWGG	1 cut(s)	286
ErhI	CCWWGG	1 cut(s)	286
FaeI	CATG	1 cut(s)	290
FaiI	YATR	2 cut(s)	118, 288
FalI	AAGNNNNNCTT	2 cut(s)	113, 145
FaqI	GGGAC	2 cut(s)	136, 154
FatI	CATG	1 cut(s)	286
Fnu4HI	GCNGC	2 cut(s)	62, 126
Fsp4HI	GCNGC	2 cut(s)	62, 126
FspBI	CTAG	2 cut(s)	26, 107
GlaI	GCGC	1 cut(s)	275
GluI	GCNGC	2 cut(s)	62, 126
GsaI	CCCAGC	1 cut(s)	141
HaeIII	GGCC	1 cut(s)	285
HapII	CCGG	1 cut(s)	100
HhaI	GCGC	1 cut(s)	276
Hin1II	CATG	1 cut(s)	290
Hin6I	GCGC	1 cut(s)	274
HinP1I	GCGC	1 cut(s)	274
HinfI	GANTC	3 cut(s)	161, 199, 252
HpaII	CCGG	1 cut(s)	100
Hpy188III	TCNNGA	2 cut(s)	196, 203
HpyAV	CCTTC	3 cut(s)	115, 200, 215
HpyCH4V	TGCA	1 cut(s)	4
HpyF10VI	GCNNNNNNNGC	4 cut(s)	67, 134, 273, 282
HpyF3I	CTNAG	1 cut(s)	81
Hsp92II	CATG	1 cut(s)	290
HspAI	GCGC	1 cut(s)	274
LguI	GCTCTTC	1 cut(s)	236
LmnI	GCTCC	3 cut(s)	102, 209, 272
LpnPI	CCDG	3 cut(s)	90, 113, 123
Lsp1109I	GCAGC	1 cut(s)	112
MaeI	CTAG	2 cut(s)	26, 107
MboII	GAAGA	2 cut(s)	230, 253
MhlI	GDGCHC	1 cut(s)	214
MlyI	GAGTC	2 cut(s)	155, 261
MnlI	CCTC	6 cut(s)	12, 22, 103, 141, 272, 275
MspI	CCGG	1 cut(s)	100
MspR9I	CCNGG	1 cut(s)	100
MvnI	CGCG	2 cut(s)	274, 276
MwoI	GCNNNNNNNGC	4 cut(s)	67, 134, 273, 282
NciI	CCSGG	1 cut(s)	100
NcoI	CCATGG	1 cut(s)	286
NlaIII	CATG	1 cut(s)	290
NlaIV	GGNNCC	3 cut(s)	104, 152, 268
PciSI	GCTCTTC	1 cut(s)	236
PfeI	GAWTC	1 cut(s)	199
PkrI	GCNGC	2 cut(s)	63, 127
PleI	GAGTC	2 cut(s)	155, 260
PpsI	GAGTC	2 cut(s)	155, 260
PpuMI	RGGWCCY	1 cut(s)	150
Psp5II	RGGWCCY	1 cut(s)	150
PspFI	CCCAGC	1 cut(s)	137
PspN4I	GGNNCC	3 cut(s)	104, 152, 268
PspPI	GGNCC	1 cut(s)	150
PspPPI	RGGWCCY	1 cut(s)	150
RsaI	GTAC	2 cut(s)	86, 236
RsaNI	GTAC	2 cut(s)	85, 235
SapI	GCTCTTC	1 cut(s)	236
SatI	GCNGC	2 cut(s)	62, 126
Sau96I	GGNCC	1 cut(s)	150
ScaI	AGTACT	1 cut(s)	86
SchI	GAGTC	2 cut(s)	155, 261
ScrFI	CCNGG	1 cut(s)	100
SduI	GDGCHC	1 cut(s)	214
SetI	ASST	4 cut(s)	33, 79, 152, 234
SinI	GGWCC	1 cut(s)	150
SsiI	CCGC	3 cut(s)	39, 61, 276
SspMI	CTAG	2 cut(s)	26, 107
StyD4I	CCNGG	1 cut(s)	98
StyI	CCWWGG	1 cut(s)	286
TaqI	TCGA	3 cut(s)	146, 197, 216
TatI	WGTACW	2 cut(s)	84, 234
TauI	GCSGC	1 cut(s)	64
TfiI	GAWTC	1 cut(s)	199
TseI	GCWGC	1 cut(s)	125
VpaK11BI	GGWCC	1 cut(s)	150
XspI	CTAG	2 cut(s)	26, 107
ZrmI	AGTACT	1 cut(s)	86

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.