Rh1BG103700

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
Physical Location & Seq
Forward (+)
18109744 .. 18109980
237 bp
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UTR
Exon/CDS
Intron
Rh1BG103700.1

Sequence Viewer

Length: 237 bp
ATGAAGAGAAAGGCTTTGAGGGAACTAGAGGTTGAAATTGCAGCTCAGCCACTACGAAAGCGGGTCAAGTCCCGGTCCGCCGAGTACTTGGAGGAGCCCCAGAGCTTGGAGGGTCTACGGAAGGCTGCATTTCCGGTCGGGACACCGAGGTCTGTTTTGGACTCACCACTCTACCATTCTTTCAAGTGTGATTTCTCAAATCTTGAAGAAGCACTCGAAGAAGGGGGGAAGCTGTAG

Protein Analysis

78

Amino Acids

8.85

Weight (kDa)

7.87

Isoelectric Point (pI)

77.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000661)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G10010
fragaria_vesca FvH4_6g03222 FvH4_6g03560 FvH4_6g03561 FvH4_6g03563 FvH4_6g03590 FvH4_6g03590 FvH4_6g09260
malus_domestica MD04G1220200.v1.1 MD12G1240700.v1.1 MD15G1083500.v1.1
prunus_persica Prupe.1G436000_v2.0.a1 Prupe.6G174800_v2.0.a1 Prupe.6G339200_v2.0.a1
pyrus_communis pycom08g08260 pycom15g07800 pycom15g07810
rosa_chinensis RchiOBHm_Chr3g0451551 RchiOBHm_Chr3g0451591 RchiOBHm_Chr3g0451621 RchiOBHm_Chr3g0452131 RchiOBHm_Chr3g0459621
rosa_laevigata RLG00000025074 RLG00000025077 RLG00000025626 RLG00000029505 RLG00000035382 RLG00000035384
rosa_multiflora Rmu_co8173672.1_g000001 Rmu_sc0000240.1_g000011 Rmu_sc0000240.1_g000014 Rmu_sc0004924.1_g000012 Rmu_sc0004924.1_g000020 Rmu_sc0004924.1_g000023 Rmu_sc0004924.1_g000025 Rmu_sc0004924.1_g000034 Rmu_sc0004924.1_g000035 Rmu_sc0009360.1_g000006 Rmu_sc0009360.1_g000008 Rmu_sc0009360.1_g000014 Rmu_sc0009360.1_g000047 Rmu_sc0011887.1_g000001 Rmu_sc0015119.1_g000001 Rmu_sc0023706.1_g000002
rosa_roxburghii Rroxscaffold_164G00436050 Rroxscaffold_164G00436390 Rroxscaffold_164G00436450 Rroxscaffold_164G00436460 Rroxscaffold_4G00317080 Rroxscaffold_4G00317090 Rroxscaffold_6G00420140 Rroxscaffold_6G00428920
rosa_rugosa Rorug02G0634200 Rorug02G0634500 Rorug02G0634700 Rorug02G0635400 Rorug02G0638500 Rorug03G0036600 Rorug03G0036700
rosa_samantha Rh1BG103700 Rh1BG103800 Rh3AG040400 Rh3BG037900 Rh3BG038200 Rh3BG041900 Rh3BG097900 Rh3CG036600 Rh3CG040300 Rh3DG037300 Rh3DG037500 Rh3DG041200 Rh3DG099300
rosa_wichuraiana Rw0G013830 Rw0G017580 Rw0G017600 Rw3G003070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 148
AccB7I CCANNNNNTGG 1 cut(s) 106
AccI GTMKAC 1 cut(s) 115
AciI CCGC 2 cut(s) 61, 78
AfaI GTAC 1 cut(s) 86
AfiI CCNNNNNNNGG 1 cut(s) 106
AgsI TTSAA 3 cut(s) 35, 184, 206
AluBI AGCT 3 cut(s) 44, 105, 232
AluI AGCT 3 cut(s) 44, 105, 232
ApeKI GCWGC 2 cut(s) 41, 125
AspS9I GGNCC 1 cut(s) 75
AsuC2I CCSGG 1 cut(s) 73
AsuHPI GGTGA 1 cut(s) 156
AvaII GGWCC 1 cut(s) 75
BanII GRGCYC 1 cut(s) 99
BbvI GCAGC 2 cut(s) 53, 112
BcnI CCSGG 1 cut(s) 73
BfaI CTAG 1 cut(s) 26
BfmI CTRYAG 1 cut(s) 233
BisI GCNGC 2 cut(s) 42, 126
BlpI GCTNAGC 1 cut(s) 45
BlsI GCNGC 2 cut(s) 43, 127
BmcAI AGTACT 1 cut(s) 86
Bme1390I CCNGG 1 cut(s) 73
Bme18I GGWCC 1 cut(s) 75
BmgT120I GGNCC 1 cut(s) 75
BmiI GGNNCC 1 cut(s) 96
BmrFI CCNGG 1 cut(s) 73
Bpu1102I GCTNAGC 1 cut(s) 45
BpuMI CCSGG 1 cut(s) 73
BsaJI CCNNGG 1 cut(s) 146
BsaWI WCCGGW 1 cut(s) 133
Bsc4I CCNNNNNNNGG 1 cut(s) 106
BseDI CCNNGG 1 cut(s) 146
BseLI CCNNNNNNNGG 1 cut(s) 106
BseMII CTCAG 1 cut(s) 59
BseRI GAGGAG 1 cut(s) 107
BseXI GCAGC 2 cut(s) 53, 112
Bsh1285I CGRYCG 1 cut(s) 138
BsiEI CGRYCG 1 cut(s) 138
BsiSI CCGG 2 cut(s) 73, 134
BslFI GGGAC 2 cut(s) 55, 154
BslI CCNNNNNNNGG 1 cut(s) 106
BsmFI GGGAC 2 cut(s) 55, 154
Bsp1286I GDGCHC 1 cut(s) 99
Bsp1720I GCTNAGC 1 cut(s) 45
BspACI CCGC 2 cut(s) 61, 78
BspCNI CTCAG 1 cut(s) 58
BspLI GGNNCC 1 cut(s) 96
BssECI CCNNGG 1 cut(s) 146
BstDEI CTNAG 1 cut(s) 45
BstMCI CGRYCG 1 cut(s) 138
BstSCI CCNGG 1 cut(s) 71
BstSFI CTRYAG 1 cut(s) 233
BstV1I GCAGC 2 cut(s) 53, 112
Cfr13I GGNCC 1 cut(s) 75
CpoI CGGWCCG 1 cut(s) 75
Csp6I GTAC 1 cut(s) 85
CspI CGGWCCG 1 cut(s) 75
CviJI RGCY 7 cut(s) 14, 44, 49, 97, 105, 125, 232
CviKI_1 RGCY 7 cut(s) 14, 44, 49, 97, 105, 125, 232
CviQI GTAC 1 cut(s) 85
DdeI CTNAG 1 cut(s) 45
DrdI GACNNNNNNGTC 1 cut(s) 148
DseDI GACNNNNNNGTC 1 cut(s) 148
EciI GGCGGA 1 cut(s) 67
Eco24I GRGCYC 1 cut(s) 99
Eco47I GGWCC 1 cut(s) 75
EcoT38I GRGCYC 1 cut(s) 99
FaqI GGGAC 2 cut(s) 55, 154
FauI CCCGC 1 cut(s) 54
FblI GTMKAC 1 cut(s) 115
Fnu4HI GCNGC 2 cut(s) 42, 126
FriOI GRGCYC 1 cut(s) 99
Fsp4HI GCNGC 2 cut(s) 42, 126
FspBI CTAG 1 cut(s) 26
GluI GCNGC 2 cut(s) 42, 126
HapII CCGG 2 cut(s) 73, 134
HinfI GANTC 1 cut(s) 161
HpaII CCGG 2 cut(s) 73, 134
HphI GGTGA 1 cut(s) 156
Hpy166II GTNNAC 1 cut(s) 116
Hpy188III TCNNGA 2 cut(s) 139, 203
Hpy8I GTNNAC 1 cut(s) 116
HpyAV CCTTC 2 cut(s) 115, 215
HpyCH4V TGCA 2 cut(s) 41, 128
HpyF3I CTNAG 1 cut(s) 45
LmnI GCTCC 1 cut(s) 94
LpnPI CCDG 3 cut(s) 86, 113, 147
Lsp1109I GCAGC 2 cut(s) 53, 112
MaeI CTAG 1 cut(s) 26
MboII GAAGA 3 cut(s) 16, 218, 230
MhlI GDGCHC 1 cut(s) 99
MluCI AATT 1 cut(s) 36
MlyI GAGTC 1 cut(s) 155
MnlI CCTC 5 cut(s) 12, 22, 85, 103, 141
MspI CCGG 2 cut(s) 73, 134
MspR9I CCNGG 1 cut(s) 73
NciI CCSGG 1 cut(s) 73
NlaIV GGNNCC 1 cut(s) 96
NmeAIII GCCGAG 1 cut(s) 106
PflMI CCANNNNNTGG 1 cut(s) 106
PkrI GCNGC 2 cut(s) 43, 127
PleI GAGTC 1 cut(s) 155
PpsI GAGTC 1 cut(s) 155
PspN4I GGNNCC 1 cut(s) 96
PspPI GGNCC 1 cut(s) 75
RsaI GTAC 1 cut(s) 86
RsaNI GTAC 1 cut(s) 85
Rsr2I CGGWCCG 1 cut(s) 75
RsrII CGGWCCG 1 cut(s) 75
SatI GCNGC 2 cut(s) 42, 126
Sau96I GGNCC 1 cut(s) 75
ScaI AGTACT 1 cut(s) 86
SchI GAGTC 1 cut(s) 155
ScrFI CCNGG 1 cut(s) 73
SduI GDGCHC 1 cut(s) 99
SetI ASST 5 cut(s) 33, 46, 107, 152, 234
SfcI CTRYAG 1 cut(s) 233
SinI GGWCC 1 cut(s) 75
Sse9I AATT 1 cut(s) 36
SsiI CCGC 2 cut(s) 61, 78
SspMI CTAG 1 cut(s) 26
StyD4I CCNGG 1 cut(s) 71
TaqI TCGA 1 cut(s) 216
TasI AATT 1 cut(s) 36
TatI WGTACW 1 cut(s) 84
TseI GCWGC 2 cut(s) 41, 125
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 1 cut(s) 133
Van91I CCANNNNNTGG 1 cut(s) 106
VpaK11BI GGWCC 1 cut(s) 75
XmiI GTMKAC 1 cut(s) 115
XspI CTAG 1 cut(s) 26
ZrmI AGTACT 1 cut(s) 86
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.