Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0009360.1

Orthogroup ID

OG0000661

Physical Location & Seq

Genomic Coordinates Forward (+)

16751 .. 17212

Gene Structure 462 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0009360.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 462 bp

atgtacttggaagagccccggagcctacagggtccatggaaggctgcctttcctgttgggacaccaaggtcacttttggactcgccattctaccattctttcaagtggtatttctcgaatcttgaaggagcactcgaagattggggaaagctgtacaagaatagcaacagagtctatctattcggctccacggaggaggccatggttaaaagagaagtggttgctttgatccccgtggtggtggcagttgtttgggcttctccgccttccaatgagcttggacttgttttaagtgagggaagagtggaagagataattccgatgaagagattgaagacagactgggctccgtatgttcctttggacaagagagttgacaaagaaggtcctgaaatctttgtcttgagctgcaagcaaagaacggctgctcacaaacacaaaaaatgtcaagggaagctgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005730 GO:0006950 GO:0007088 GO:0007346 GO:0008150 GO:0009266 GO:0009408 GO:0009628 GO:0009893 GO:0010286 GO:0010369 GO:0010468 GO:0010564 GO:0010604 GO:0010628 GO:0019222 GO:0031974 GO:0031981 GO:0033043 GO:0033044 GO:0033045 GO:0033047 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044464 GO:0048518 GO:0048519 GO:0048523 GO:0048583 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051726 GO:0051783 GO:0051983 GO:0060255 GO:0060968 GO:0060969 GO:0065007 GO:0070013 GO:0080134 GO:0080135 GO:0098687 GO:1900034 GO:1901651

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

153

Amino Acids

17.46

Weight (kDa)

9.04

Isoelectric Point (pI)

53.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000661)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G10010
fragaria_vesca	FvH4_6g03222 FvH4_6g03560 FvH4_6g03561 FvH4_6g03563 FvH4_6g03590 FvH4_6g03590 FvH4_6g09260
malus_domestica	MD04G1220200.v1.1 MD12G1240700.v1.1 MD15G1083500.v1.1
prunus_persica	Prupe.1G436000_v2.0.a1 Prupe.6G174800_v2.0.a1 Prupe.6G339200_v2.0.a1
pyrus_communis	pycom08g08260 pycom15g07800 pycom15g07810
rosa_chinensis	RchiOBHm_Chr3g0451551 RchiOBHm_Chr3g0451591 RchiOBHm_Chr3g0451621 RchiOBHm_Chr3g0452131 RchiOBHm_Chr3g0459621
rosa_laevigata	RLG00000025074 RLG00000025077 RLG00000025626 RLG00000029505 RLG00000035382 RLG00000035384
rosa_multiflora	Rmu_co8173672.1_g000001 Rmu_sc0000240.1_g000011 Rmu_sc0000240.1_g000014 Rmu_sc0004924.1_g000012 Rmu_sc0004924.1_g000020 Rmu_sc0004924.1_g000023 Rmu_sc0004924.1_g000025 Rmu_sc0004924.1_g000034 Rmu_sc0004924.1_g000035 Rmu_sc0009360.1_g000006 Rmu_sc0009360.1_g000008 Rmu_sc0009360.1_g000014 Rmu_sc0009360.1_g000047 Rmu_sc0011887.1_g000001 Rmu_sc0015119.1_g000001 Rmu_sc0023706.1_g000002
rosa_roxburghii	Rroxscaffold_164G00436050 Rroxscaffold_164G00436390 Rroxscaffold_164G00436450 Rroxscaffold_164G00436460 Rroxscaffold_4G00317080 Rroxscaffold_4G00317090 Rroxscaffold_6G00420140 Rroxscaffold_6G00428920
rosa_rugosa	Rorug02G0634200 Rorug02G0634500 Rorug02G0634700 Rorug02G0635400 Rorug02G0638500 Rorug03G0036600 Rorug03G0036700
rosa_samantha	Rh1BG103700 Rh1BG103800 Rh3AG040400 Rh3BG037900 Rh3BG038200 Rh3BG041900 Rh3BG097900 Rh3CG036600 Rh3CG040300 Rh3DG037300 Rh3DG037500 Rh3DG041200 Rh3DG099300
rosa_wichuraiana	Rw0G013830 Rw0G017580 Rw0G017600 Rw3G003070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	67
AciI	CCGC	1 cut(s)	263
AclWI	GGATC	1 cut(s)	223
AfaI	GTAC	2 cut(s)	5, 155
AfiI	CCNNNNNNNGG	1 cut(s)	238
AgsI	TTSAA	3 cut(s)	103, 125, 334
AluBI	AGCT	4 cut(s)	151, 277, 408, 457
AluI	AGCT	4 cut(s)	151, 277, 408, 457
Alw21I	GWGCWC	1 cut(s)	133
AlwI	GGATC	1 cut(s)	223
AoxI	GGCC	1 cut(s)	198
ApeKI	GCWGC	3 cut(s)	44, 408, 425
AspS9I	GGNCC	2 cut(s)	32, 386
AsuC2I	CCSGG	1 cut(s)	19
AvaII	GGWCC	2 cut(s)	32, 386
BanII	GRGCYC	2 cut(s)	18, 349
BbsI	GAAGAC	1 cut(s)	341
Bbv12I	GWGCWC	1 cut(s)	133
BbvI	GCAGC	3 cut(s)	31, 395, 412
BceAI	ACGGC	1 cut(s)	438
BcnI	CCSGG	1 cut(s)	19
BfmI	CTRYAG	1 cut(s)	26
BisI	GCNGC	3 cut(s)	45, 409, 426
BlsI	GCNGC	3 cut(s)	46, 410, 427
Bme1390I	CCNGG	1 cut(s)	19
Bme18I	GGWCC	2 cut(s)	32, 386
BmgT120I	GGNCC	2 cut(s)	32, 386
BmiI	GGNNCC	4 cut(s)	23, 33, 187, 348
BmrFI	CCNGG	1 cut(s)	19
BmrI	ACTGGG	1 cut(s)	352
BmuI	ACTGGG	1 cut(s)	352
BpiI	GAAGAC	1 cut(s)	341
BpuEI	CTTGAG	1 cut(s)	424
BpuMI	CCSGG	1 cut(s)	19
BsaJI	CCNNGG	6 cut(s)	17, 35, 65, 189, 201, 234
Bsc4I	CCNNNNNNNGG	1 cut(s)	238
Bse1I	ACTGG	1 cut(s)	347
BseDI	CCNNGG	6 cut(s)	17, 35, 65, 189, 201, 234
BseLI	CCNNNNNNNGG	1 cut(s)	238
BseNI	ACTGG	1 cut(s)	347
BseRI	GAGGAG	1 cut(s)	209
BseXI	GCAGC	3 cut(s)	31, 395, 412
BshFI	GGCC	1 cut(s)	200
BsiHKAI	GWGCWC	1 cut(s)	133
BsiSI	CCGG	1 cut(s)	19
BslFI	GGGAC	1 cut(s)	73
BslI	CCNNNNNNNGG	1 cut(s)	238
BsmFI	GGGAC	1 cut(s)	73
BsnI	GGCC	1 cut(s)	200
Bsp1286I	GDGCHC	3 cut(s)	18, 133, 349
Bsp1407I	TGTACA	1 cut(s)	153
Bsp143I	GATC	1 cut(s)	228
Bsp19I	CCATGG	2 cut(s)	35, 201
BspACI	CCGC	1 cut(s)	263
BspANI	GGCC	1 cut(s)	200
BspLI	GGNNCC	4 cut(s)	23, 33, 187, 348
BspPI	GGATC	1 cut(s)	223
BspQI	GCTCTTC	1 cut(s)	6
BsrGI	TGTACA	1 cut(s)	153
BsrI	ACTGG	1 cut(s)	347
BssECI	CCNNGG	6 cut(s)	17, 35, 65, 189, 201, 234
BssMI	GATC	1 cut(s)	228
BssT1I	CCWWGG	3 cut(s)	35, 65, 201
Bst6I	CTCTTC	4 cut(s)	6, 295, 303, 320
BstAUI	TGTACA	1 cut(s)	153
BstC8I	GCNNGC	1 cut(s)	413
BstDSI	CCRYGG	4 cut(s)	35, 189, 201, 234
BstKTI	GATC	1 cut(s)	231
BstMBI	GATC	1 cut(s)	228
BstSCI	CCNGG	1 cut(s)	17
BstSFI	CTRYAG	1 cut(s)	26
BstV1I	GCAGC	3 cut(s)	31, 395, 412
BstV2I	GAAGAC	1 cut(s)	341
BsuRI	GGCC	1 cut(s)	200
BtgI	CCRYGG	4 cut(s)	35, 189, 201, 234
Cac8I	GCNNGC	1 cut(s)	413
Cfr13I	GGNCC	2 cut(s)	32, 386
Csp6I	GTAC	2 cut(s)	4, 154
CviAII	CATG	2 cut(s)	36, 202
CviQI	GTAC	2 cut(s)	4, 154
DpnI	GATC	1 cut(s)	230
DpnII	GATC	1 cut(s)	228
DrdI	GACNNNNNNGTC	1 cut(s)	67
DseDI	GACNNNNNNGTC	1 cut(s)	67
Eam1104I	CTCTTC	4 cut(s)	6, 295, 303, 320
EarI	CTCTTC	4 cut(s)	6, 295, 303, 320
EciI	GGCGGA	1 cut(s)	252
Eco130I	CCWWGG	3 cut(s)	35, 65, 201
Eco24I	GRGCYC	2 cut(s)	18, 349
Eco47I	GGWCC	2 cut(s)	32, 386
EcoO109I	RGGNCCY	1 cut(s)	386
EcoT14I	CCWWGG	3 cut(s)	35, 65, 201
EcoT38I	GRGCYC	2 cut(s)	18, 349
ErhI	CCWWGG	3 cut(s)	35, 65, 201
FaeI	CATG	2 cut(s)	39, 205
FaiI	YATR	3 cut(s)	37, 203, 354
FalI	AAGNNNNNCTT	2 cut(s)	32, 64
FaqI	GGGAC	1 cut(s)	73
FatI	CATG	2 cut(s)	35, 201
Fnu4HI	GCNGC	3 cut(s)	45, 409, 426
FriOI	GRGCYC	2 cut(s)	18, 349
Fsp4HI	GCNGC	3 cut(s)	45, 409, 426
GluI	GCNGC	3 cut(s)	45, 409, 426
HaeIII	GGCC	1 cut(s)	200
HapII	CCGG	1 cut(s)	19
Hin1II	CATG	2 cut(s)	39, 205
HincII	GTYRAC	1 cut(s)	376
HindII	GTYRAC	1 cut(s)	376
HinfI	GANTC	3 cut(s)	80, 118, 171
HpaII	CCGG	1 cut(s)	19
Hpy166II	GTNNAC	1 cut(s)	376
Hpy188I	TCNGA	1 cut(s)	321
Hpy188III	TCNNGA	4 cut(s)	115, 122, 389, 403
Hpy8I	GTNNAC	1 cut(s)	376
HpyAV	CCTTC	4 cut(s)	34, 119, 276, 377
HpyCH4V	TGCA	1 cut(s)	411
Hsp92II	CATG	2 cut(s)	39, 205
Kzo9I	GATC	1 cut(s)	228
LguI	GCTCTTC	1 cut(s)	6
LmnI	GCTCC	4 cut(s)	21, 128, 191, 352
LpnPI	CCDG	5 cut(s)	14, 32, 66, 328, 402
Lsp1109I	GCAGC	3 cut(s)	31, 395, 412
MaeIII	GTNAC	1 cut(s)	69
MalI	GATC	1 cut(s)	230
MboI	GATC	1 cut(s)	228
MboII	GAAGA	6 cut(s)	23, 149, 312, 320, 337, 346
MhlI	GDGCHC	3 cut(s)	18, 133, 349
MluCI	AATT	1 cut(s)	315
MlyI	GAGTC	2 cut(s)	74, 180
MnlI	CCTC	3 cut(s)	187, 190, 289
MseI	TTAA	2 cut(s)	207, 290
MspI	CCGG	1 cut(s)	19
MspR9I	CCNGG	1 cut(s)	19
NciI	CCSGG	1 cut(s)	19
NcoI	CCATGG	2 cut(s)	35, 201
NdeII	GATC	1 cut(s)	228
NlaIII	CATG	2 cut(s)	39, 205
NlaIV	GGNNCC	4 cut(s)	23, 33, 187, 348
NmuCI	GTSAC	1 cut(s)	69
PciSI	GCTCTTC	1 cut(s)	6
PfeI	GAWTC	1 cut(s)	118
PkrI	GCNGC	3 cut(s)	46, 410, 427
PleI	GAGTC	2 cut(s)	74, 179
PpsI	GAGTC	2 cut(s)	74, 179
PpuMI	RGGWCCY	1 cut(s)	386
Psp5II	RGGWCCY	1 cut(s)	386
PspN4I	GGNNCC	4 cut(s)	23, 33, 187, 348
PspPI	GGNCC	2 cut(s)	32, 386
PspPPI	RGGWCCY	1 cut(s)	386
RsaI	GTAC	2 cut(s)	5, 155
RsaNI	GTAC	2 cut(s)	4, 154
SapI	GCTCTTC	1 cut(s)	6
SaqAI	TTAA	2 cut(s)	207, 290
SatI	GCNGC	3 cut(s)	45, 409, 426
Sau3AI	GATC	1 cut(s)	228
Sau96I	GGNCC	2 cut(s)	32, 386
SchI	GAGTC	2 cut(s)	74, 180
ScrFI	CCNGG	1 cut(s)	19
SduI	GDGCHC	3 cut(s)	18, 133, 349
SetI	ASST	6 cut(s)	71, 153, 279, 388, 410, 459
SfcI	CTRYAG	1 cut(s)	26
SinI	GGWCC	2 cut(s)	32, 386
SmlI	CTYRAG	1 cut(s)	403
SmoI	CTYRAG	1 cut(s)	403
Sse9I	AATT	1 cut(s)	315
SsiI	CCGC	1 cut(s)	263
StyD4I	CCNGG	1 cut(s)	17
StyI	CCWWGG	3 cut(s)	35, 65, 201
TaqI	TCGA	2 cut(s)	116, 135
TasI	AATT	1 cut(s)	315
TatI	WGTACW	2 cut(s)	3, 153
TfiI	GAWTC	1 cut(s)	118
Tru1I	TTAA	2 cut(s)	207, 290
Tru9I	TTAA	2 cut(s)	207, 290
TseFI	GTSAC	1 cut(s)	69
TseI	GCWGC	3 cut(s)	44, 408, 425
Tsp45I	GTSAC	1 cut(s)	69
TspDTI	ATGAA	1 cut(s)	338
TspGWI	ACGGA	2 cut(s)	206, 339
VpaK11BI	GGWCC	2 cut(s)	32, 386

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.