Rorug02G0635400
NBS-LRR Family

Disease resistance protein (TIR-NBS-LRR class)

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
Physical Location & Seq
Reverse (-)
74892645 .. 74898197
5553 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0635400.1

Sequence Viewer

Length: 2094 bp
ATGACTATGGACAGAGAGAAGGAGAGAGAGATAGAGCTGGAGAGTGCAATGTACACTAACTGTTTGCTGTTAGGTTTGGATCCGGCCATTATCGGACTCGGAGCCTCCAACTCCACTCCTCGGGTCGGGTTCTTCCGCCACTCCAACCCCAAACTCGGCGAGCAGCTCCTCTACTTCATCCTCTCTTCCCTCCGTGGCCCAATTCAATCCGCCAAGGATTTCGATAAGGTCTGGCCAATCTTCGATTCTACGCAATCTCGCGATTTTCGTAAGGTTGTGCAAGGGATTATTAGCGAGCTTGAATCGCAAGGGGCGCTTCCCAGGAGCAATTCGAGGGTTTCATCACTTGCTACATGTTGTGGACCGAGGTTTGTAGAACTTCTGTGGCAACTTTCTTTGCATGCTTTGCGAGAGGTTCATAGGCGGACATTTGCAGCTGATGTAGCTTCTAACCCTCTTCCTGCGTCATTGACAGATGTGGCCTTTTCACATGCAGCCACTTTACTTCCTGTTACAAAGGCTAGAATAGCACTTGAAAGAAGGAAGTTTCTTAAGAATGCGGAAACAGCAGTACAGAGACAGGCCATGTGGTCAAATTTGGCTCATGAAATGACAGCAGAGTTTCGTGGTCTGTGTGCTGAAGAGGCTTATTTGCAGCAAGAGCTGGAAAAATTACATGATCTTAGGAACAAAGTCAAGTTGGAAGGGGAACATTGGGATGACCTTGTATCTAGTTCGAGTCAGAATTCTCATTTAGTATCCAAGGCTACTCGTTTGTGGGAGTCGATATTAGCCCGTAAAAGTCAACATGAAGTTCTTGCTTCGGGCCCTATTGAGGATTTAATTGCTCATCGGGAGCATAGGTACCGCATTTCTGGATCTTCTTTGCTTGCAGCTATGGATCAGAGCTCTCAGGTTCCTTATGCAGATGTCTTATCTGTCCAGTCTGGTGATTTTACTCCTACACATGTAGATGATAAAGAGCAGAGTGATGGTTCACGTGTCAATATTAACAGAGAAAAGATGAAGAATAATTTAGATTCATCCCATTCACAAGTAAATGATGAAACTCTTCATCGAGCAGATGAGAGAAGTGGAAGAGTCCACCCAACTGTTGACGTGGCAGAAATTATCAGGCGTTGGACGCATGCTTTACAGCGTATTCATAAACAGTCGCTTCATATGGCAAAAGCTAATGAGGGAGAGGGTCCAGAAATTCTAAGAAGTGCGCATGAAGGCAGTTCAAGTGGTCATGCCGAGTCATTAGCTGCAACACTAGCTGAACATCAGCAGCACTTGGTTAGCTTTCAGGTTCTCATTAATCAACTGAAGGAAGTTGCTCCAGCAATACAAAAGTCAATATCAGAATGTACAGATAAAGTAGATAGCATTTCCTCTAATCTGCCTCCAATGACTAAGCATCCTGGCCGCTCAACCTCACCTAGTCAAGCACAGAGCAGTGGAAGGACATTGGAGAGCACTGATGATGTGGCTGAAGTCACTTCGAAGTTGTCCACCTTTCAGCTCGAAAAGGTGTCAGCCAGTGCGCCTGCTCTAAAGCTCCCCCAGTTATTTAGCTTGACGCCTAATTCTCATAAGCGCCTTGCTTCAGCTACTCAAATAAGTCAAACAGAGAATTTTTCTGAAAGGAAACCTTTGGAGCAGCCTCTATCTAATAATCACATAGATAATCTGCCACAAGATAGTGATAGTAATTATGTCCAGAATTTAAAGAGATCTGTTAGAGAAGCTGCTTTGTCACGGAAGTCCTTCCATTCCAAATCATCACAAGGCAGTCATTCTGATGAAAGCTCAGAGCATTTCTTTATGCCTCTTTCATCATCTGGGTTTTCTCGTCTGGGTCCAGAATCTAAAGGGGGTTTGATAACTAGTTCGCTTCATGATTATGACCAAGTAAATGGGTTTCTTTCAGTTACGGGTTCAAACAGTGCTGCTTCTGATGCACAAAGATCGTTTTATGACTTTGAGGAAGCTCAGGAGCAGGTCTTCTCTCCTCCTTTGCTAATAGAAGATGCTTATGAAGACTTACTGGCACCGCTTTCAGAAACTGAAGCAGCATTAATGGAGCACTGA

Protein Analysis

697

Amino Acids

77.29

Weight (kDa)

5.93

Isoelectric Point (pI)

53.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HAUS6_N PF14661 17 - 261 7.7e-44 HAUS augmin-like complex subunit 6 N-terminus
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000020)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g26600 FvH4_2g27070 FvH4_2g27070 FvH4_2g27070 FvH4_2g27370 FvH4_2g27370 FvH4_2g27370 FvH4_2g27370 FvH4_2g27370 FvH4_2g27370 FvH4_2g27370 FvH4_2g27370 FvH4_2g27701 FvH4_2g27720 FvH4_3g05740 FvH4_3g05740 FvH4_3g05740 FvH4_3g05740 FvH4_3g15720 FvH4_5g35770 FvH4_5g35770 FvH4_5g35770 FvH4_5g35770 FvH4_5g35770 FvH4_6g34390 FvH4_6g34410 FvH4_6g34410
malus_domestica MD02G1278900.v1.1 MD03G1127300.v1.1 MD04G1027100.v1.1 MD04G1035000.v1.1 MD04G1035200.v1.1 MD04G1035600.v1.1 MD04G1036000.v1.1 MD04G1036100.v1.1 MD04G1036400.v1.1 MD05G1125400.v1.1 MD05G1125600.v1.1 MD05G1125700.v1.1 MD05G1126000.v1.1 MD05G1131900.v1.1 MD05G1132400.v1.1 MD05G1132600.v1.1 MD05G1132800.v1.1 MD05G1135700.v1.1 MD05G1135800.v1.1 MD05G1136700.v1.1 MD05G1137400.v1.1 MD05G1137900.v1.1 MD05G1138300.v1.1 MD05G1138400.v1.1 MD05G1138500.v1.1 MD05G1141700.v1.1 MD05G1142600.v1.1 MD05G1143300.v1.1 MD05G1145200.v1.1 MD05G1146500.v1.1 MD05G1146600.v1.1 MD05G1147100.v1.1 MD05G1147500.v1.1 MD05G1147600.v1.1 MD05G1148300.v1.1 MD05G1148600.v1.1 MD05G1149400.v1.1 MD05G1149500.v1.1 MD05G1150100.v1.1 MD05G1150200.v1.1 MD05G1150900.v1.1 MD05G1151200.v1.1 MD08G1168700.v1.1 MD10G1128400.v1.1 MD10G1128500.v1.1 MD10G1128600.v1.1 MD10G1134800.v1.1 MD10G1135300.v1.1 MD10G1135800.v1.1 MD10G1135900.v1.1 MD10G1136100.v1.1 MD10G1136200.v1.1 MD10G1136400.v1.1 MD10G1136500.v1.1 MD10G1136600.v1.1 MD10G1137100.v1.1 MD10G1137400.v1.1 MD10G1137500.v1.1 MD10G1137700.v1.1 MD10G1140900.v1.1 MD10G1141100.v1.1 MD10G1141400.v1.1 MD12G1073200.v1.1 MD12G1074900.v1.1 MD16G1140700.v1.1
prunus_persica Prupe.1G160400_v2.0.a1 Prupe.1G160500_v2.0.a1 Prupe.2G060400_v2.0.a1 Prupe.2G060400_v2.0.a1 Prupe.2G060400_v2.0.a1 Prupe.2G060400_v2.0.a1 Prupe.2G060400_v2.0.a1 Prupe.2G060400_v2.0.a1 Prupe.2G083200_v2.0.a1 Prupe.6G152300_v2.0.a1 Prupe.8G037000_v2.0.a1 Prupe.8G117300_v2.0.a1 Prupe.8G117700_v2.0.a1 Prupe.8G118900_v2.0.a1 Prupe.8G173600_v2.0.a1 Prupe.8G173700_v2.0.a1 Prupe.8G176400_v2.0.a1 Prupe.8G179400_v2.0.a1 Prupe.8G179500_v2.0.a1 Prupe.8G179500_v2.0.a1 Prupe.8G179500_v2.0.a1 Prupe.8G179500_v2.0.a1 Prupe.8G179500_v2.0.a1 Prupe.8G179500_v2.0.a1 Prupe.8G179500_v2.0.a1 Prupe.8G179500_v2.0.a1 Prupe.8G179500_v2.0.a1 Prupe.8G179500_v2.0.a1 Prupe.8G179500_v2.0.a1 Prupe.8G237200_v2.0.a1 Prupe.I001800_v2.0.a1 Prupe.I002000_v2.0.a1 Prupe.I002100_v2.0.a1 Prupe.I002200_v2.0.a1 Prupe.I002300_v2.0.a1 Prupe.I002300_v2.0.a1 Prupe.I002300_v2.0.a1
pyrus_communis pycom02g10490 pycom03g08410 pycom04g02350 pycom04g02370 pycom04g02890 pycom04g02920 pycom04g02930 pycom05g09430 pycom05g11970 pycom05g11980 pycom05g12000 pycom05g12010 pycom05g12040 pycom05g12080 pycom05g12100 pycom05g12110 pycom05g12160 pycom05g12910 pycom05g12920 pycom05g12940 pycom05g13220 pycom05g13230 pycom05g13260 pycom05g13300 pycom05g13320 pycom05g13330 pycom05g13350 pycom05g13680 pycom05g13710 pycom05g13720 pycom05g13730 pycom05g14120 pycom05g14130 pycom05g14160 pycom05g14210 pycom05g14250 pycom05g14280 pycom05g14290 pycom05g14340 pycom05g14390 pycom05g14430 pycom05g14460 pycom05g14530 pycom05g14560 pycom05g14570 pycom05g14580 pycom10g11010 pycom10g11020 pycom10g11030 pycom10g11250 pycom10g11640 pycom10g11670 pycom10g11680 pycom10g11720 pycom10g11730 pycom10g11950 pycom10g11960 pycom10g12000 pycom10g12050 pycom10g12070 pycom10g12310
rosa_chinensis RchiOBHm_Chr1g0314371 RchiOBHm_Chr1g0314461 RchiOBHm_Chr1g0314491 RchiOBHm_Chr1g0314661 RchiOBHm_Chr1g0314671 RchiOBHm_Chr1g0314701 RchiOBHm_Chr1g0314711 RchiOBHm_Chr1g0314741 RchiOBHm_Chr1g0327611 RchiOBHm_Chr1g0333931 RchiOBHm_Chr1g0334091 RchiOBHm_Chr1g0334101 RchiOBHm_Chr2g0144731 RchiOBHm_Chr2g0144751 RchiOBHm_Chr3g0451471 RchiOBHm_Chr3g0451481 RchiOBHm_Chr3g0451521 RchiOBHm_Chr3g0451541 RchiOBHm_Chr3g0451581 RchiOBHm_Chr3g0451641 RchiOBHm_Chr3g0451661 RchiOBHm_Chr3g0451671 RchiOBHm_Chr3g0484861 RchiOBHm_Chr5g0013861 RchiOBHm_Chr5g0013871 RchiOBHm_Chr5g0013881 RchiOBHm_Chr5g0013921 RchiOBHm_Chr5g0013931 RchiOBHm_Chr5g0026001 RchiOBHm_Chr5g0026101 RchiOBHm_Chr5g0026421 RchiOBHm_Chr5g0066271 RchiOBHm_Chr6g0287411 RchiOBHm_Chr6g0287421 RchiOBHm_Chr6g0287561 RchiOBHm_Chr6g0287581 RchiOBHm_Chr6g0287591 RchiOBHm_Chr6g0296221 RchiOBHm_Chr7g0237431
rosa_laevigata RLG00000001003 RLG00000011679 RLG00000011716 RLG00000012483 RLG00000012484 RLG00000013019 RLG00000015060 RLG00000020104 RLG00000020105 RLG00000020106 RLG00000020107 RLG00000020108 RLG00000020109 RLG00000023202 RLG00000024217 RLG00000025656 RLG00000025657 RLG00000026224 RLG00000029504 RLG00000029507 RLG00000029508 RLG00000029509 RLG00000029980 RLG00000030042 RLG00000032050 RLG00000032051 RLG00000032052 RLG00000032891 RLG00000032896 RLG00000032900 RLG00000032901 RLG00000032930 RLG00000032931 RLG00000035381 RLG00000035383 RLG00000035847
rosa_multiflora Rmu_co7983036.1_g000001 Rmu_co8026080.1_g000001 Rmu_co8242645.1_g000001 Rmu_co8396077.1_g000001 Rmu_co8406137.1_g000001 Rmu_co8420673.1_g000001 Rmu_co8458221.1_g000001 Rmu_sc0000026.1_g000007 Rmu_sc0000795.1_g000054 Rmu_sc0000997.1_g000011 Rmu_sc0001689.1_g000014 Rmu_sc0001802.1_g000009 Rmu_sc0002354.1_g000053 Rmu_sc0002354.1_g000055 Rmu_sc0002806.1_g000016 Rmu_sc0002833.1_g000022 Rmu_sc0002843.1_g000009 Rmu_sc0002923.1_g000021 Rmu_sc0003020.1_g000017 Rmu_sc0003598.1_g000012 Rmu_sc0003598.1_g000013 Rmu_sc0003598.1_g000014 Rmu_sc0003598.1_g000015 Rmu_sc0003690.1_g000001 Rmu_sc0004708.1_g000014 Rmu_sc0004924.1_g000009 Rmu_sc0004924.1_g000018 Rmu_sc0004924.1_g000022 Rmu_sc0004924.1_g000026 Rmu_sc0004924.1_g000032 Rmu_sc0004924.1_g000033 Rmu_sc0004924.1_g000037 Rmu_sc0004924.1_g000039 Rmu_sc0004974.1_g000006 Rmu_sc0005581.1_g000001 Rmu_sc0005581.1_g000010 Rmu_sc0005803.1_g000021 Rmu_sc0006653.1_g000009 Rmu_sc0007029.1_g000008 Rmu_sc0009360.1_g000007 Rmu_sc0009360.1_g000012 Rmu_sc0009360.1_g000013 Rmu_sc0009360.1_g000015 Rmu_sc0009360.1_g000021 Rmu_sc0009360.1_g000033 Rmu_sc0009360.1_g000048 Rmu_sc0009360.1_g000049 Rmu_sc0009360.1_g000051 Rmu_sc0011096.1_g000005 Rmu_sc0016584.1_g000002 Rmu_sc0020815.1_g000001 Rmu_sc0020815.1_g000002 Rmu_sc0025510.1_g000001 Rmu_sc0026263.1_g000003 Rmu_sc0029456.1_g000001 Rmu_sc0029457.1_g000001 Rmu_sc0029568.1_g000001 Rmu_sc0032214.1_g000001 Rmu_sc0041321.1_g000001 Rmu_sc0042928.1_g000001 Rmu_ssc0000042.1_g000010 Rmu_ssc0000042.1_g000019 Rmu_ssc0000042.1_g000020 Rmu_ssc0000126.1_g000058
rosa_roxburghii Rroxscaffold_164G00436360 Rroxscaffold_164G00436400 Rroxscaffold_164G00436430 Rroxscaffold_164G00436440 Rroxscaffold_164G00436470 Rroxscaffold_1G00052970 Rroxscaffold_1G00062790 Rroxscaffold_1G00062820 Rroxscaffold_2G00100990 Rroxscaffold_2G00101010 Rroxscaffold_3G00224210 Rroxscaffold_4G00297610 Rroxscaffold_4G00317070 Rroxscaffold_4G00317100 Rroxscaffold_4G00317110 Rroxscaffold_4G00317120 Rroxscaffold_4G00322520 Rroxscaffold_4G00322530 Rroxscaffold_4G00323280 Rroxscaffold_4G00331920 Rroxscaffold_6G00410350 Rroxscaffold_6G00428880 Rroxscaffold_6G00428910 Rroxscaffold_6G00428930 Rroxscaffold_7G00171360 Rroxscaffold_7G00171730 Rroxscaffold_7G00178330 Rroxscaffold_7G00178730 Rroxscaffold_7G00180960 Rroxscaffold_7G00181370
rosa_rugosa Rorug01G0001400 Rorug01G0001500 Rorug01G0001600 Rorug01G0001700 Rorug01G0068600 Rorug01G0068700 Rorug02G0389400 Rorug02G0389500 Rorug02G0634000 Rorug02G0634300 Rorug02G0634600 Rorug02G0634800 Rorug02G0634900 Rorug02G0634900 Rorug02G0635000 Rorug02G0635100 Rorug02G0635200 Rorug02G0635300 Rorug02G0635400 Rorug03G0213900 Rorug05G0012800 Rorug05G0012900 Rorug05G0013100 Rorug05G0013300 Rorug05G0090300 Rorug05G0090400 Rorug05G0092900 Rorug05G0093000 Rorug05G0093100 Rorug06G0189200 Rorug06G0189200 Rorug06G0189300 Rorug06G0189400 Rorug06G0259500 Rorug07G0303200 Rorug07G0303300.1
rosa_samantha Rh1AG010600 Rh1AG010900 Rh1AG011800 Rh1AG012100 Rh1AG012500 Rh1AG081000 Rh1AG085900 Rh1AG135300 Rh1AG135400 Rh1AG135500 Rh1AG135700 Rh1AG135800 Rh1AG136400 Rh1BG003400 Rh1BG003700 Rh1BG068500 Rh1BG103400 Rh1BG103500 Rh1BG103600 Rh1CG128600 Rh1CG128800 Rh1DG005800 Rh1DG090100 Rh1DG140800 Rh1DG140900 Rh1DG141100 Rh1DG141200 Rh1DG141500 Rh2AG441200 Rh2BG451500 Rh2BG451800 Rh2BG451900 Rh2CG428500 Rh2DG461500 Rh3AG037000 Rh3AG037100 Rh3AG037200 Rh3BG037600 Rh3BG037700 Rh3BG037800 Rh3BG038100 Rh3BG299500 Rh3BG299800 Rh3BG299900 Rh3CG036200 Rh3CG036400 Rh3CG036500 Rh3CG036800 Rh3CG297200 Rh3DG037100 Rh3DG037200 Rh3DG037400 Rh3DG293200 Rh5BG103800 Rh5BG104100 Rh5BG104200 Rh5BG180100 Rh5BG180200 Rh5BG183000 Rh5BG451600 Rh5CG115600 Rh5CG115700 Rh5CG115900 Rh5CG116100 Rh5CG198800 Rh5CG199300 Rh5CG202400 Rh5DG102100 Rh5DG102200 Rh5DG102300 Rh5DG102600 Rh5DG102800 Rh5DG181100 Rh5DG181300 Rh5DG181800 Rh5DG184900 Rh5DG185100 Rh6AG256000 Rh6AG299200 Rh6AG299300 Rh6AG300400 Rh6AG371800 Rh6BG383300 Rh6CG303400 Rh6CG314400 Rh6CG385000 Rh6DG297800 Rh6DG372300 Rh7BG046900 Rh7BG312300 Rh7BG312500 Rh7BG430400
rosa_wichuraiana Rw0G009620 Rw0G015730 Rw1G000490 Rw1G006410 Rw1G006700 Rw1G011270 Rw1G011280 Rw1G011310 Rw2G036080 Rw3G002740 Rw3G002750 Rw3G002760 Rw3G002770 Rw3G023580 Rw5G009360 Rw5G009370 Rw5G009380 Rw5G009390 Rw5G009400 Rw5G016550 Rw5G016890 Rw5G016910 Rw5G040760 Rw6G022190 Rw6G025910 Rw6G032400 Rw6G032690 Rw6G032790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 1230
Acc36I ACCTGC 1 cut(s) 1993
Acc65I GGTACC 1 cut(s) 864
AccB1I GGYRCC 2 cut(s) 864, 2053
AccBSI CCGCTC 1 cut(s) 1431
AccII CGCG 1 cut(s) 261
AciI CCGC 7 cut(s) 136, 210, 424, 560, 868, 1429, 2057
AclWI GGATC 4 cut(s) 74, 87, 886, 909
AcoI YGGCCR 3 cut(s) 84, 233, 1426
AcsI RAATTY 5 cut(s) 595, 745, 1215, 1636, 1726
AcuI CTGAAG 5 cut(s) 660, 1349, 1515, 1593, 2091
AcvI CACGTG 1 cut(s) 1001
AcyI GRCGYC 1 cut(s) 1583
AfaI GTAC 4 cut(s) 53, 573, 866, 1372
AfiI CCNNNNNNNGG 4 cut(s) 120, 125, 155, 835
AflII CTTAAG 1 cut(s) 551
AflIII ACRYGT 3 cut(s) 353, 967, 1000
AgsI TTSAA 5 cut(s) 206, 302, 536, 1245, 1944
AhlI ACTAGT 1 cut(s) 1889
AjiI CACGTC 1 cut(s) 1120
AjnI CCWGG 2 cut(s) 320, 1423
AjuI GAANNNNNNNTTGG 2 cut(s) 229, 261
Alw21I GWGCWC 3 cut(s) 911, 1481, 2091
Alw26I GTCTC 1 cut(s) 571
AlwI GGATC 4 cut(s) 74, 87, 886, 909
AlwNI CAGNNNCTG 1 cut(s) 2069
Ama87I CYCGRG 1 cut(s) 120
AoxI GGCC 7 cut(s) 84, 196, 233, 480, 582, 826, 1426
ApaI GGGCCC 1 cut(s) 830
ApoI RAATTY 5 cut(s) 595, 745, 1215, 1636, 1726
AseI ATTAAT 2 cut(s) 1320, 2081
Asp700I GAANNNNTTC 2 cut(s) 1071, 1769
Asp718I GGTACC 1 cut(s) 864
AspLEI GCGC 4 cut(s) 316, 1231, 1549, 1602
AspS9I GGNCC 6 cut(s) 197, 362, 826, 827, 1208, 1862
AsuHPI GGTGA 2 cut(s) 962, 1431
AsuII TTCGAA 1 cut(s) 1505
AvaI CYCGRG 1 cut(s) 120
AvaII GGWCC 3 cut(s) 362, 1208, 1862
BaeGI GKGCMC 1 cut(s) 830
BalI TGGCCA 1 cut(s) 235
BamHI GGATCC 1 cut(s) 79
BanI GGYRCC 2 cut(s) 864, 2053
BanII GRGCYC 2 cut(s) 830, 911
BbrPI CACGTG 1 cut(s) 1001
BbsI GAAGAC 2 cut(s) 1999, 2049
Bbv12I GWGCWC 3 cut(s) 911, 1481, 2091
BccI CCATC 1 cut(s) 986
BcgI CGANNNNNNTGC 2 cut(s) 1953, 1987
BciT130I CCWGG 2 cut(s) 322, 1425
BciVI GTATCC 1 cut(s) 769
BcoDI GTCTC 1 cut(s) 571
BcuI ACTAGT 1 cut(s) 1889
BfaI CTAG 5 cut(s) 522, 732, 1277, 1443, 1890
BfoI RGCGCY 2 cut(s) 317, 1603
BfrI CTTAAG 1 cut(s) 551
BfuAI ACCTGC 1 cut(s) 1993
BfuI GTATCC 1 cut(s) 769
BglII AGATCT 1 cut(s) 1736
Bme1390I CCNGG 2 cut(s) 322, 1425
Bme18I GGWCC 3 cut(s) 362, 1208, 1862
BmeT110I CYCGRG 1 cut(s) 120
BmgBI CACGTC 1 cut(s) 1120
BmgT120I GGNCC 6 cut(s) 197, 362, 826, 827, 1208, 1862
BmiI GGNNCC 8 cut(s) 81, 103, 828, 866, 918, 1209, 1863, 2055
BmrFI CCNGG 2 cut(s) 322, 1425
BmrI ACTGGG 1 cut(s) 1561
BmsI GCATC 3 cut(s) 1429, 1951, 2023
BmuI ACTGGG 1 cut(s) 1561
BpiI GAAGAC 2 cut(s) 1999, 2049
BpmI CTGGAG 2 cut(s) 59, 1326
Bpu10I CCTNAGC 1 cut(s) 1995
Bpu14I TTCGAA 1 cut(s) 1505
BsaAI YACGTR 1 cut(s) 1001
BsaHI GRCGYC 1 cut(s) 1583
BsaJI CCNNGG 6 cut(s) 119, 193, 213, 320, 365, 762
BsaXI ACNNNNNCTCC 2 cut(s) 848, 878
Bsc4I CCNNNNNNNGG 4 cut(s) 120, 125, 155, 835
Bse1I ACTGG 4 cut(s) 943, 1542, 1567, 2055
Bse3DI GCAATG 1 cut(s) 54
BseBI CCWGG 2 cut(s) 322, 1425
BseDI CCNNGG 6 cut(s) 119, 193, 213, 320, 365, 762
BseGI GGATG 4 cut(s) 177, 724, 1043, 1420
BseLI CCNNNNNNNGG 4 cut(s) 120, 125, 155, 835
BseMI GCAATG 1 cut(s) 54
BseMII CTCAG 3 cut(s) 926, 1827, 2009
BseNI ACTGG 4 cut(s) 943, 1542, 1567, 2055
BseRI GAGGAG 3 cut(s) 108, 158, 2004
BseSI GKGCMC 1 cut(s) 830
Bsh1236I CGCG 1 cut(s) 261
BshFI GGCC 7 cut(s) 86, 198, 235, 482, 584, 828, 1428
BshNI GGYRCC 2 cut(s) 864, 2053
BsiHKAI GWGCWC 3 cut(s) 911, 1481, 2091
BsiHKCI CYCGRG 1 cut(s) 120
BsiSI CCGG 1 cut(s) 83
BslI CCNNNNNNNGG 4 cut(s) 120, 125, 155, 835
BsmAI GTCTC 1 cut(s) 571
BsmI GAATGC 1 cut(s) 562
BsnI GGCC 7 cut(s) 86, 198, 235, 482, 584, 828, 1428
BsoBI CYCGRG 1 cut(s) 120
Bsp119I TTCGAA 1 cut(s) 1505
Bsp120I GGGCCC 1 cut(s) 826
Bsp1286I GDGCHC 4 cut(s) 830, 911, 1481, 2091
Bsp1407I TGTACA 2 cut(s) 51, 1370
Bsp143I GATC 6 cut(s) 79, 679, 878, 901, 1736, 1970
Bsp68I TCGCGA 1 cut(s) 261
BspACI CCGC 7 cut(s) 136, 210, 424, 560, 868, 1429, 2057
BspANI GGCC 7 cut(s) 86, 198, 235, 482, 584, 828, 1428
BspCNI CTCAG 3 cut(s) 925, 1826, 2008
BspFNI CGCG 1 cut(s) 261
BspHI TCATGA 2 cut(s) 604, 1900
BspLI GGNNCC 8 cut(s) 81, 103, 828, 866, 918, 1209, 1863, 2055
BspMI ACCTGC 1 cut(s) 1993
BspPI GGATC 4 cut(s) 74, 87, 886, 909
BspT104I TTCGAA 1 cut(s) 1505
BspT107I GGYRCC 2 cut(s) 864, 2053
BspTI CTTAAG 1 cut(s) 551
BsrBI CCGCTC 1 cut(s) 1431
BsrDI GCAATG 1 cut(s) 54
BsrGI TGTACA 2 cut(s) 51, 1370
BsrI ACTGG 4 cut(s) 943, 1542, 1567, 2055
BssECI CCNNGG 6 cut(s) 119, 193, 213, 320, 365, 762
BssMI GATC 6 cut(s) 79, 679, 878, 901, 1736, 1970
BssNI GRCGYC 1 cut(s) 1583
BssT1I CCWWGG 2 cut(s) 213, 762
Bst2UI CCWGG 2 cut(s) 322, 1425
Bst4CI ACNGT 4 cut(s) 62, 1114, 1173, 1949
Bst6I CTCTTC 5 cut(s) 190, 462, 636, 1077, 1093
BstACI GRCGYC 1 cut(s) 1583
BstAFI CTTAAG 1 cut(s) 551
BstAPI GCANNNNNTGC 1 cut(s) 406
BstAUI TGTACA 2 cut(s) 51, 1370
BstBAI YACGTR 1 cut(s) 1001
BstBI TTCGAA 1 cut(s) 1505
BstC8I GCNNGC 6 cut(s) 161, 296, 402, 891, 1149, 1551
BstDEI CTNAG 6 cut(s) 683, 912, 1220, 1416, 1813, 1995
BstDSI CCRYGG 1 cut(s) 193
BstF5I GGATG 4 cut(s) 177, 724, 1043, 1420
BstFNI CGCG 1 cut(s) 261
BstH2I RGCGCY 2 cut(s) 317, 1603
BstHHI GCGC 4 cut(s) 316, 1231, 1549, 1602
BstKTI GATC 6 cut(s) 82, 682, 881, 904, 1739, 1973
BstMAI GTCTC 1 cut(s) 571
BstMBI GATC 6 cut(s) 79, 679, 878, 901, 1736, 1970
BstNI CCWGG 2 cut(s) 322, 1425
BstNSI RCATGY 5 cut(s) 357, 404, 494, 971, 1151
BstSCI CCNGG 2 cut(s) 320, 1423
BstSLI GKGCMC 1 cut(s) 830
BstUI CGCG 1 cut(s) 261
BstV2I GAAGAC 2 cut(s) 1999, 2049
BstX2I RGATCY 3 cut(s) 79, 878, 1736
BstXI CCANNNNNNTGG 1 cut(s) 1919
BstYI RGATCY 3 cut(s) 79, 878, 1736
BsuI GTATCC 1 cut(s) 769
BsuRI GGCC 7 cut(s) 86, 198, 235, 482, 584, 828, 1428
BtgI CCRYGG 1 cut(s) 193
BtrI CACGTC 1 cut(s) 1120
BtsCI GGATG 4 cut(s) 177, 724, 1043, 1420
BtsI GCAGTG 1 cut(s) 1465
BtsIMutI CAGTG 5 cut(s) 1465, 1479, 1549, 1954, 2089
BtuMI TCGCGA 1 cut(s) 261
BveI ACCTGC 1 cut(s) 1993
Cac8I GCNNGC 6 cut(s) 161, 296, 402, 891, 1149, 1551
CaiI CAGNNNCTG 1 cut(s) 2069
CciI TCATGA 2 cut(s) 604, 1900
CfoI GCGC 4 cut(s) 316, 1231, 1549, 1602
Cfr13I GGNCC 6 cut(s) 197, 362, 826, 827, 1208, 1862
CseI GACGC 3 cut(s) 453, 1153, 1591
Csp6I GTAC 4 cut(s) 52, 572, 865, 1371
CviQI GTAC 4 cut(s) 52, 572, 865, 1371
DdeI CTNAG 6 cut(s) 683, 912, 1220, 1416, 1813, 1995
DpnI GATC 6 cut(s) 81, 681, 880, 903, 1738, 1972
DpnII GATC 6 cut(s) 79, 679, 878, 901, 1736, 1970
DraI TTTAAA 1 cut(s) 1731
EaeI YGGCCR 3 cut(s) 84, 233, 1426
Eam1104I CTCTTC 5 cut(s) 190, 462, 636, 1077, 1093
EarI CTCTTC 5 cut(s) 190, 462, 636, 1077, 1093
EciI GGCGGA 3 cut(s) 125, 199, 439
Ecl136II GAGCTC 1 cut(s) 909
Eco130I CCWWGG 2 cut(s) 213, 762
Eco24I GRGCYC 2 cut(s) 830, 911
Eco47I GGWCC 3 cut(s) 362, 1208, 1862
Eco53kI GAGCTC 1 cut(s) 909
Eco57I CTGAAG 5 cut(s) 660, 1349, 1515, 1593, 2091
Eco72I CACGTG 1 cut(s) 1001
Eco88I CYCGRG 1 cut(s) 120
EcoICRI GAGCTC 1 cut(s) 909
EcoO109I RGGNCCY 1 cut(s) 827
EcoRI GAATTC 1 cut(s) 745
EcoRII CCWGG 2 cut(s) 320, 1423
EcoT14I CCWWGG 2 cut(s) 213, 762
EcoT38I GRGCYC 2 cut(s) 830, 911
ErhI CCWWGG 2 cut(s) 213, 762
FalI AAGNNNNNCTT 4 cut(s) 300, 332, 1639, 1671
FauNDI CATATG 1 cut(s) 1182
FokI GGATG 4 cut(s) 164, 731, 1030, 1407
FriOI GRGCYC 2 cut(s) 830, 911
FspAI RTGCGCAY 1 cut(s) 1230
FspBI CTAG 5 cut(s) 522, 732, 1277, 1443, 1890
FspI TGCGCA 1 cut(s) 1230
GlaI GCGC 4 cut(s) 315, 1230, 1548, 1601
GsuI CTGGAG 2 cut(s) 59, 1326
HaeII RGCGCY 2 cut(s) 317, 1603
HaeIII GGCC 7 cut(s) 86, 198, 235, 482, 584, 828, 1428
HapII CCGG 1 cut(s) 83
HgaI GACGC 3 cut(s) 453, 1153, 1591
HhaI GCGC 4 cut(s) 316, 1231, 1549, 1602
Hin1I GRCGYC 1 cut(s) 1583
Hin6I GCGC 4 cut(s) 314, 1229, 1547, 1600
HinP1I GCGC 4 cut(s) 314, 1229, 1547, 1600
HincII GTYRAC 2 cut(s) 806, 1117
HindII GTYRAC 2 cut(s) 806, 1117
HinfI GANTC 9 cut(s) 96, 245, 302, 739, 782, 1040, 1101, 1259, 1868
HpaII CCGG 1 cut(s) 83
HphI GGTGA 2 cut(s) 962, 1431
Hpy166II GTNNAC 7 cut(s) 54, 362, 806, 998, 1105, 1117, 1515
Hpy188III TCNNGA 9 cut(s) 260, 605, 854, 876, 1211, 1723, 1865, 1901, 1997
Hpy8I GTNNAC 7 cut(s) 54, 362, 806, 998, 1105, 1117, 1515
HpyAV CCTTC 7 cut(s) 13, 534, 698, 1229, 1324, 1458, 1780
HpyCH4III ACNGT 4 cut(s) 62, 1114, 1173, 1949
HpyCH4IV ACGT 2 cut(s) 1000, 1119
HpyF3I CTNAG 6 cut(s) 683, 912, 1220, 1416, 1813, 1995
HpySE526I ACGT 2 cut(s) 1000, 1119
Hsp92I GRCGYC 1 cut(s) 1583
HspAI GCGC 4 cut(s) 314, 1229, 1547, 1600
KpnI GGTACC 1 cut(s) 868
Kzo9I GATC 6 cut(s) 79, 679, 878, 901, 1736, 1970
LmnI GCTCC 9 cut(s) 101, 171, 324, 856, 1345, 1566, 1660, 1999, 2086
LweI GCATC 3 cut(s) 1429, 1951, 2023
MaeI CTAG 5 cut(s) 522, 732, 1277, 1443, 1890
MaeII ACGT 2 cut(s) 1000, 1119
MaeIII GTNAC 4 cut(s) 511, 1498, 1758, 1933
MalI GATC 6 cut(s) 81, 681, 880, 903, 1738, 1972
MbiI CCGCTC 1 cut(s) 1431
MboI GATC 6 cut(s) 79, 679, 878, 901, 1736, 1970
MflI RGATCY 3 cut(s) 79, 878, 1736
MhlI GDGCHC 4 cut(s) 830, 911, 1481, 2091
MlsI TGGCCA 1 cut(s) 235
MluNI TGGCCA 1 cut(s) 235
MlyI GAGTC 5 cut(s) 90, 748, 791, 1110, 1268
MmeI TCCRAC 4 cut(s) 132, 168, 681, 1121
Mox20I TGGCCA 1 cut(s) 235
MroXI GAANNNNTTC 2 cut(s) 1071, 1769
MscI TGGCCA 1 cut(s) 235
MseI TTAA 6 cut(s) 552, 842, 1011, 1320, 1730, 2081
MslI CAYNNNNRTG 4 cut(s) 717, 972, 1803, 1905
Msp20I TGGCCA 1 cut(s) 235
MspA1I CMGCKG 1 cut(s) 437
MspCI CTTAAG 1 cut(s) 551
MspI CCGG 1 cut(s) 83
MspR9I CCNGG 2 cut(s) 322, 1425
Mva1269I GAATGC 1 cut(s) 562
MvaI CCWGG 2 cut(s) 322, 1425
MvnI CGCG 1 cut(s) 261
NdeI CATATG 1 cut(s) 1182
NdeII GATC 6 cut(s) 79, 679, 878, 901, 1736, 1970
NlaIV GGNNCC 8 cut(s) 81, 103, 828, 866, 918, 1209, 1863, 2055
NmeAIII GCCGAG 2 cut(s) 135, 1282
NmuCI GTSAC 2 cut(s) 1498, 1758
NruI TCGCGA 1 cut(s) 261
NsbI TGCGCA 1 cut(s) 1230
NspI RCATGY 5 cut(s) 357, 404, 494, 971, 1151
NspV TTCGAA 1 cut(s) 1505
PaeI GCATGC 2 cut(s) 404, 1151
PagI TCATGA 2 cut(s) 604, 1900
PciI ACATGT 2 cut(s) 353, 967
PcsI WCGNNNNNNNCGW 1 cut(s) 265
PctI GAATGC 1 cut(s) 562
PdmI GAANNNNTTC 2 cut(s) 1071, 1769
PfeI GAWTC 4 cut(s) 245, 302, 1040, 1868
PleI GAGTC 5 cut(s) 90, 747, 790, 1109, 1267
PmaCI CACGTG 1 cut(s) 1001
PmlI CACGTG 1 cut(s) 1001
PpsI GAGTC 5 cut(s) 90, 747, 790, 1109, 1267
Ppu21I YACGTR 1 cut(s) 1001
PscI ACATGT 2 cut(s) 353, 967
PshBI ATTAAT 2 cut(s) 1320, 2081
Psp124BI GAGCTC 1 cut(s) 911
Psp6I CCWGG 2 cut(s) 320, 1423
PspCI CACGTG 1 cut(s) 1001
PspGI CCWGG 2 cut(s) 320, 1423
PspN4I GGNNCC 8 cut(s) 81, 103, 828, 866, 918, 1209, 1863, 2055
PspOMI GGGCCC 1 cut(s) 826
PspPI GGNCC 6 cut(s) 197, 362, 826, 827, 1208, 1862
PstNI CAGNNNCTG 1 cut(s) 2069
PsuI RGATCY 3 cut(s) 79, 878, 1736
PvuII CAGCTG 1 cut(s) 437
RruI TCGCGA 1 cut(s) 261
RsaI GTAC 4 cut(s) 53, 573, 866, 1372
RsaNI GTAC 4 cut(s) 52, 572, 865, 1371
RseI CAYNNNNRTG 4 cut(s) 717, 972, 1803, 1905
SacI GAGCTC 1 cut(s) 911
SaqAI TTAA 6 cut(s) 552, 842, 1011, 1320, 1730, 2081
Sau3AI GATC 6 cut(s) 79, 679, 878, 901, 1736, 1970
Sau96I GGNCC 6 cut(s) 197, 362, 826, 827, 1208, 1862
SchI GAGTC 5 cut(s) 90, 748, 791, 1110, 1268
ScrFI CCNGG 2 cut(s) 322, 1425
SduI GDGCHC 4 cut(s) 830, 911, 1481, 2091
SfaNI GCATC 3 cut(s) 1429, 1951, 2023
SfuI TTCGAA 1 cut(s) 1505
SinI GGWCC 3 cut(s) 362, 1208, 1862
SmiMI CAYNNNNRTG 4 cut(s) 717, 972, 1803, 1905
SmlI CTYRAG 1 cut(s) 551
SmoI CTYRAG 1 cut(s) 551
SpeI ACTAGT 1 cut(s) 1889
SphI GCATGC 2 cut(s) 404, 1151
SsiI CCGC 7 cut(s) 136, 210, 424, 560, 868, 1429, 2057
SspI AATATT 1 cut(s) 1009
SspMI CTAG 5 cut(s) 522, 732, 1277, 1443, 1890
SstI GAGCTC 1 cut(s) 911
StyD4I CCNGG 2 cut(s) 320, 1423
StyI CCWWGG 2 cut(s) 213, 762
TaaI ACNGT 4 cut(s) 62, 1114, 1173, 1949
TaiI ACGT 2 cut(s) 1003, 1122
TaqI TCGA 8 cut(s) 222, 243, 332, 737, 785, 1078, 1505, 1527
TaqII GACCGA 1 cut(s) 379
TatI WGTACW 3 cut(s) 51, 571, 1370
TauI GCSGC 1 cut(s) 1431
TfiI GAWTC 4 cut(s) 245, 302, 1040, 1868
Tru1I TTAA 6 cut(s) 552, 842, 1011, 1320, 1730, 2081
Tru9I TTAA 6 cut(s) 552, 842, 1011, 1320, 1730, 2081
TscAI CASTG 4 cut(s) 1465, 1486, 1549, 1954
TseFI GTSAC 2 cut(s) 1498, 1758
Tsp45I GTSAC 2 cut(s) 1498, 1758
TspGWI ACGGA 2 cut(s) 182, 1777
TspRI CASTG 4 cut(s) 1465, 1486, 1549, 1954
Vha464I CTTAAG 1 cut(s) 551
VpaK11BI GGWCC 3 cut(s) 362, 1208, 1862
VspI ATTAAT 2 cut(s) 1320, 2081
XapI RAATTY 5 cut(s) 595, 745, 1215, 1636, 1726
XceI RCATGY 5 cut(s) 357, 404, 494, 971, 1151
XmnI GAANNNNTTC 2 cut(s) 1071, 1769
XspI CTAG 5 cut(s) 522, 732, 1277, 1443, 1890
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.