RchiOBHm_Chr6g0287561

TMV resistance protein N-like

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
Physical Location & Seq
Forward (+)
50951345 .. 50954745
3401 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ25797

Sequence Viewer

Length: 2193 bp
ATGTCGATATCCTTCAACAAAACCTACATAGATAACAGACTCGAGAGAGGAGACGAAATCGGTCCCGCACTTGTCAAAGCAATAGAGGAATCAGAGCTCTCGGTAATCATTTTCTCGGAGAATTATGCCTCTTCTACATGGTGCTTGGATGAGCTTGTGCATATACTCGAATGCAAGAAGAAATATGGATTCTCTGTTATACCTGTTTTCTACCACGTAGATCCATCACATGTGCGGAGACAGGAGGAGAGTTATGCAGCTGCGTTTGCTCAACTTGAACAACGTTTCGAGGATAAGGTGGAGATGGTGCGCCGGTGGAGGGATGCTTTGACAACTGCTGCAAATCTGTCTGGGTTTGATTCTCACAAAATAAGGCCTGAGTCCAAGTTAGTTGAGGATATTGTTAAAGCTATTTTAGTGAAATTGAATCGTGGATCATCCAGTGTTTTGAAGGGCCTGGTAGGGATGAAAAGCCGCGTTCGGGAAGTTGAAAGGTTGATGTGTTTGGACTCTCTAGATGTCAGGACTGTAGGCATATGGGGTATGGGTGGTGTAGGTAAGACCACCCTTGCTCGTGCTGTATTTGACCATCTCTCTTTGGAATTTGAAGCTTGTTGCTTTATTGGAGATATTAGGGAAGCATCAGAGACTAGTCATGGACTTAATCAGTTGCAAAAGGAGCTTCTTCGTATTTTGTTAGACGAAGAAAATCTGAATATGGGCACTATATCTGCAAGTTCAACTCTTGATAGACGGAGGCTCCGCCGTAAAAAGGTCCTCATTGTTCTTGATGATGTGAATGATCCAAGGCAACTGAATGTTTTAGTTGGAGATGATGCTCAGTTTGGTCCTGGAAGTAGAATCCTTATAACAACCAGATATATGCAACCACTTAAGACTGGAGGAGCAGATGAGATATACAAAGTTGAGCAATTAAATGAAGATGAAGCCCTTCAGCTTTTTCATGTAAATGCTTTCAAAGATATGTGTCCTACATCTGAATATACAGATTTGCCAAGAATGGTGATAAGTTATGCTGATGGCATTCCGTTGGCTCTTAAGGTTTTGGGTTCCCTATTGCACTCCAAGAGAAAAAGAGAATGGGAGAGTGAATTGATTAAACTGAAAAAGATTCCCAACAAAGGAATTCAGGATGTGTTGAGAGTAAGTTATGATGGATTAGACGAGGATCAGAAAGGGATATTTCTTGAGATTGCATGTTTTTATAAAGGGGAGAAGATAGATTATGCAAAAAGAATGTTAGATACTTGTAACTTCTGTGCTGATGCGGGAATTGAAGTTCTGACTGATATGTCTCTCATATCAATCAAGAATAACTACCTGTGGATGCATGATTTGATACAAGAAATGGGTCGTGCAATTGTCCGTGAACCTAAGGAGCGTGGAAAACGCAGTAGGTTGTGGATTGCTGAGGATATCCGTCAAGTATTCAAAAATAATACAGGAACCGGAACAATTGAAGCTATATTCCTTGATGTGTCTAAGATTACAAAGCTGCATGTGAGAGGTGCAGCCTTCAAAGACATGCATAATCTAAGATTGCTCAAAATTTATAATTCTGGTGATGAACTTCCTGAGAAGCGCAGCAAAATGTATCTTCCCGAAGGCCTTTCGTCTCTCCCTGATGCCCTTAGATATCTCTACTGGGATGGATACCCTTTGAAATCATTGCCATCAGAATTTTGTCGGGACAGTCTTGTTGAGCTTCATATGCCCAATAGCCAAGTTGAGCAACTTTGGACTGAAGACCAGAATTTTGGGAAGTTGAGAAGGATAAATCTTAGTCATTCCAAGAACCTAACTAAAGTTCCGGATCTCTCTGAGAGTCCGATTGAGAATATAGAACTTCAGAACTGCACAAGTTTAGTTCAAGTTCCTACGTATTTTCAAACTCTTGACAAGCTTACCTCTCTGAATCTTAGCGGCTGCTCAAGTCTTAAACATCTTCCAGATATGCCAGTGAATATGACAACCTTATCTTTACATGGAACTGCAATAGAAGAGTTGCCTGCATCAATTTGGTCCCACAAGAAGCTTGTATCATTAGACCTGATGTACTGTCAAGACCTTAAGAATCTTCCGAGCAGCACTTGCAATCTGGATTCTCTCCAATTCTTGGTCTTCTTGGCTGCTCAACTCTTGGCAGATTTTCAGAACTTCCCAGGAATATAA

Protein Analysis

730

Amino Acids

82.97

Weight (kDa)

6.05

Isoelectric Point (pI)

51.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TIR PF01582 7 - 153 3.6e-42 TIR domain
TIR_2 PF13676 8 - 76 3.1e-07 TIR domain
NB-ARC PF00931 164 - 327 3.8e-19 NB-ARC domain
WHD_ROQ1 PF23282 396 - 464 1.2e-21 Disease resistance protein Roq1-like, winged-helix domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000020)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g26600 FvH4_2g27070 FvH4_2g27070 FvH4_2g27070 FvH4_2g27370 FvH4_2g27370 FvH4_2g27370 FvH4_2g27370 FvH4_2g27370 FvH4_2g27370 FvH4_2g27370 FvH4_2g27370 FvH4_2g27701 FvH4_2g27720 FvH4_3g05740 FvH4_3g05740 FvH4_3g05740 FvH4_3g05740 FvH4_3g15720 FvH4_5g35770 FvH4_5g35770 FvH4_5g35770 FvH4_5g35770 FvH4_5g35770 FvH4_6g34390 FvH4_6g34410 FvH4_6g34410
malus_domestica MD02G1278900.v1.1 MD03G1127300.v1.1 MD04G1027100.v1.1 MD04G1035000.v1.1 MD04G1035200.v1.1 MD04G1035600.v1.1 MD04G1036000.v1.1 MD04G1036100.v1.1 MD04G1036400.v1.1 MD05G1125400.v1.1 MD05G1125600.v1.1 MD05G1125700.v1.1 MD05G1126000.v1.1 MD05G1131900.v1.1 MD05G1132400.v1.1 MD05G1132600.v1.1 MD05G1132800.v1.1 MD05G1135700.v1.1 MD05G1135800.v1.1 MD05G1136700.v1.1 MD05G1137400.v1.1 MD05G1137900.v1.1 MD05G1138300.v1.1 MD05G1138400.v1.1 MD05G1138500.v1.1 MD05G1141700.v1.1 MD05G1142600.v1.1 MD05G1143300.v1.1 MD05G1145200.v1.1 MD05G1146500.v1.1 MD05G1146600.v1.1 MD05G1147100.v1.1 MD05G1147500.v1.1 MD05G1147600.v1.1 MD05G1148300.v1.1 MD05G1148600.v1.1 MD05G1149400.v1.1 MD05G1149500.v1.1 MD05G1150100.v1.1 MD05G1150200.v1.1 MD05G1150900.v1.1 MD05G1151200.v1.1 MD08G1168700.v1.1 MD10G1128400.v1.1 MD10G1128500.v1.1 MD10G1128600.v1.1 MD10G1134800.v1.1 MD10G1135300.v1.1 MD10G1135800.v1.1 MD10G1135900.v1.1 MD10G1136100.v1.1 MD10G1136200.v1.1 MD10G1136400.v1.1 MD10G1136500.v1.1 MD10G1136600.v1.1 MD10G1137100.v1.1 MD10G1137400.v1.1 MD10G1137500.v1.1 MD10G1137700.v1.1 MD10G1140900.v1.1 MD10G1141100.v1.1 MD10G1141400.v1.1 MD12G1073200.v1.1 MD12G1074900.v1.1 MD16G1140700.v1.1
prunus_persica Prupe.1G160400_v2.0.a1 Prupe.1G160500_v2.0.a1 Prupe.2G060400_v2.0.a1 Prupe.2G060400_v2.0.a1 Prupe.2G060400_v2.0.a1 Prupe.2G060400_v2.0.a1 Prupe.2G060400_v2.0.a1 Prupe.2G060400_v2.0.a1 Prupe.2G083200_v2.0.a1 Prupe.6G152300_v2.0.a1 Prupe.8G037000_v2.0.a1 Prupe.8G117300_v2.0.a1 Prupe.8G117700_v2.0.a1 Prupe.8G118900_v2.0.a1 Prupe.8G173600_v2.0.a1 Prupe.8G173700_v2.0.a1 Prupe.8G176400_v2.0.a1 Prupe.8G179400_v2.0.a1 Prupe.8G179500_v2.0.a1 Prupe.8G179500_v2.0.a1 Prupe.8G179500_v2.0.a1 Prupe.8G179500_v2.0.a1 Prupe.8G179500_v2.0.a1 Prupe.8G179500_v2.0.a1 Prupe.8G179500_v2.0.a1 Prupe.8G179500_v2.0.a1 Prupe.8G179500_v2.0.a1 Prupe.8G179500_v2.0.a1 Prupe.8G179500_v2.0.a1 Prupe.8G237200_v2.0.a1 Prupe.I001800_v2.0.a1 Prupe.I002000_v2.0.a1 Prupe.I002100_v2.0.a1 Prupe.I002200_v2.0.a1 Prupe.I002300_v2.0.a1 Prupe.I002300_v2.0.a1 Prupe.I002300_v2.0.a1
pyrus_communis pycom02g10490 pycom03g08410 pycom04g02350 pycom04g02370 pycom04g02890 pycom04g02920 pycom04g02930 pycom05g09430 pycom05g11970 pycom05g11980 pycom05g12000 pycom05g12010 pycom05g12040 pycom05g12080 pycom05g12100 pycom05g12110 pycom05g12160 pycom05g12910 pycom05g12920 pycom05g12940 pycom05g13220 pycom05g13230 pycom05g13260 pycom05g13300 pycom05g13320 pycom05g13330 pycom05g13350 pycom05g13680 pycom05g13710 pycom05g13720 pycom05g13730 pycom05g14120 pycom05g14130 pycom05g14160 pycom05g14210 pycom05g14250 pycom05g14280 pycom05g14290 pycom05g14340 pycom05g14390 pycom05g14430 pycom05g14460 pycom05g14530 pycom05g14560 pycom05g14570 pycom05g14580 pycom10g11010 pycom10g11020 pycom10g11030 pycom10g11250 pycom10g11640 pycom10g11670 pycom10g11680 pycom10g11720 pycom10g11730 pycom10g11950 pycom10g11960 pycom10g12000 pycom10g12050 pycom10g12070 pycom10g12310
rosa_chinensis RchiOBHm_Chr1g0314371 RchiOBHm_Chr1g0314461 RchiOBHm_Chr1g0314491 RchiOBHm_Chr1g0314661 RchiOBHm_Chr1g0314671 RchiOBHm_Chr1g0314701 RchiOBHm_Chr1g0314711 RchiOBHm_Chr1g0314741 RchiOBHm_Chr1g0327611 RchiOBHm_Chr1g0333931 RchiOBHm_Chr1g0334091 RchiOBHm_Chr1g0334101 RchiOBHm_Chr2g0144731 RchiOBHm_Chr2g0144751 RchiOBHm_Chr3g0451471 RchiOBHm_Chr3g0451481 RchiOBHm_Chr3g0451521 RchiOBHm_Chr3g0451541 RchiOBHm_Chr3g0451581 RchiOBHm_Chr3g0451641 RchiOBHm_Chr3g0451661 RchiOBHm_Chr3g0451671 RchiOBHm_Chr3g0484861 RchiOBHm_Chr5g0013861 RchiOBHm_Chr5g0013871 RchiOBHm_Chr5g0013881 RchiOBHm_Chr5g0013921 RchiOBHm_Chr5g0013931 RchiOBHm_Chr5g0026001 RchiOBHm_Chr5g0026101 RchiOBHm_Chr5g0026421 RchiOBHm_Chr5g0066271 RchiOBHm_Chr6g0287411 RchiOBHm_Chr6g0287421 RchiOBHm_Chr6g0287561 RchiOBHm_Chr6g0287581 RchiOBHm_Chr6g0287591 RchiOBHm_Chr6g0296221 RchiOBHm_Chr7g0237431
rosa_laevigata RLG00000001003 RLG00000011679 RLG00000011716 RLG00000012483 RLG00000012484 RLG00000013019 RLG00000015060 RLG00000020104 RLG00000020105 RLG00000020106 RLG00000020107 RLG00000020108 RLG00000020109 RLG00000023202 RLG00000024217 RLG00000025656 RLG00000025657 RLG00000026224 RLG00000029504 RLG00000029507 RLG00000029508 RLG00000029509 RLG00000029980 RLG00000030042 RLG00000032050 RLG00000032051 RLG00000032052 RLG00000032891 RLG00000032896 RLG00000032900 RLG00000032901 RLG00000032930 RLG00000032931 RLG00000035381 RLG00000035383 RLG00000035847
rosa_multiflora Rmu_co7983036.1_g000001 Rmu_co8026080.1_g000001 Rmu_co8242645.1_g000001 Rmu_co8396077.1_g000001 Rmu_co8406137.1_g000001 Rmu_co8420673.1_g000001 Rmu_co8458221.1_g000001 Rmu_sc0000026.1_g000007 Rmu_sc0000795.1_g000054 Rmu_sc0000997.1_g000011 Rmu_sc0001689.1_g000014 Rmu_sc0001802.1_g000009 Rmu_sc0002354.1_g000053 Rmu_sc0002354.1_g000055 Rmu_sc0002806.1_g000016 Rmu_sc0002833.1_g000022 Rmu_sc0002843.1_g000009 Rmu_sc0002923.1_g000021 Rmu_sc0003020.1_g000017 Rmu_sc0003598.1_g000012 Rmu_sc0003598.1_g000013 Rmu_sc0003598.1_g000014 Rmu_sc0003598.1_g000015 Rmu_sc0003690.1_g000001 Rmu_sc0004708.1_g000014 Rmu_sc0004924.1_g000009 Rmu_sc0004924.1_g000018 Rmu_sc0004924.1_g000022 Rmu_sc0004924.1_g000026 Rmu_sc0004924.1_g000032 Rmu_sc0004924.1_g000033 Rmu_sc0004924.1_g000037 Rmu_sc0004924.1_g000039 Rmu_sc0004974.1_g000006 Rmu_sc0005581.1_g000001 Rmu_sc0005581.1_g000010 Rmu_sc0005803.1_g000021 Rmu_sc0006653.1_g000009 Rmu_sc0007029.1_g000008 Rmu_sc0009360.1_g000007 Rmu_sc0009360.1_g000012 Rmu_sc0009360.1_g000013 Rmu_sc0009360.1_g000015 Rmu_sc0009360.1_g000021 Rmu_sc0009360.1_g000033 Rmu_sc0009360.1_g000048 Rmu_sc0009360.1_g000049 Rmu_sc0009360.1_g000051 Rmu_sc0011096.1_g000005 Rmu_sc0016584.1_g000002 Rmu_sc0020815.1_g000001 Rmu_sc0020815.1_g000002 Rmu_sc0025510.1_g000001 Rmu_sc0026263.1_g000003 Rmu_sc0029456.1_g000001 Rmu_sc0029457.1_g000001 Rmu_sc0029568.1_g000001 Rmu_sc0032214.1_g000001 Rmu_sc0041321.1_g000001 Rmu_sc0042928.1_g000001 Rmu_ssc0000042.1_g000010 Rmu_ssc0000042.1_g000019 Rmu_ssc0000042.1_g000020 Rmu_ssc0000126.1_g000058
rosa_roxburghii Rroxscaffold_164G00436360 Rroxscaffold_164G00436400 Rroxscaffold_164G00436430 Rroxscaffold_164G00436440 Rroxscaffold_164G00436470 Rroxscaffold_1G00052970 Rroxscaffold_1G00062790 Rroxscaffold_1G00062820 Rroxscaffold_2G00100990 Rroxscaffold_2G00101010 Rroxscaffold_3G00224210 Rroxscaffold_4G00297610 Rroxscaffold_4G00317070 Rroxscaffold_4G00317100 Rroxscaffold_4G00317110 Rroxscaffold_4G00317120 Rroxscaffold_4G00322520 Rroxscaffold_4G00322530 Rroxscaffold_4G00323280 Rroxscaffold_4G00331920 Rroxscaffold_6G00410350 Rroxscaffold_6G00428880 Rroxscaffold_6G00428910 Rroxscaffold_6G00428930 Rroxscaffold_7G00171360 Rroxscaffold_7G00171730 Rroxscaffold_7G00178330 Rroxscaffold_7G00178730 Rroxscaffold_7G00180960 Rroxscaffold_7G00181370
rosa_rugosa Rorug01G0001400 Rorug01G0001500 Rorug01G0001600 Rorug01G0001700 Rorug01G0068600 Rorug01G0068700 Rorug02G0389400 Rorug02G0389500 Rorug02G0634000 Rorug02G0634300 Rorug02G0634600 Rorug02G0634800 Rorug02G0634900 Rorug02G0634900 Rorug02G0635000 Rorug02G0635100 Rorug02G0635200 Rorug02G0635300 Rorug02G0635400 Rorug03G0213900 Rorug05G0012800 Rorug05G0012900 Rorug05G0013100 Rorug05G0013300 Rorug05G0090300 Rorug05G0090400 Rorug05G0092900 Rorug05G0093000 Rorug05G0093100 Rorug06G0189200 Rorug06G0189200 Rorug06G0189300 Rorug06G0189400 Rorug06G0259500 Rorug07G0303200 Rorug07G0303300.1
rosa_samantha Rh1AG010600 Rh1AG010900 Rh1AG011800 Rh1AG012100 Rh1AG012500 Rh1AG081000 Rh1AG085900 Rh1AG135300 Rh1AG135400 Rh1AG135500 Rh1AG135700 Rh1AG135800 Rh1AG136400 Rh1BG003400 Rh1BG003700 Rh1BG068500 Rh1BG103400 Rh1BG103500 Rh1BG103600 Rh1CG128600 Rh1CG128800 Rh1DG005800 Rh1DG090100 Rh1DG140800 Rh1DG140900 Rh1DG141100 Rh1DG141200 Rh1DG141500 Rh2AG441200 Rh2BG451500 Rh2BG451800 Rh2BG451900 Rh2CG428500 Rh2DG461500 Rh3AG037000 Rh3AG037100 Rh3AG037200 Rh3BG037600 Rh3BG037700 Rh3BG037800 Rh3BG038100 Rh3BG299500 Rh3BG299800 Rh3BG299900 Rh3CG036200 Rh3CG036400 Rh3CG036500 Rh3CG036800 Rh3CG297200 Rh3DG037100 Rh3DG037200 Rh3DG037400 Rh3DG293200 Rh5BG103800 Rh5BG104100 Rh5BG104200 Rh5BG180100 Rh5BG180200 Rh5BG183000 Rh5BG451600 Rh5CG115600 Rh5CG115700 Rh5CG115900 Rh5CG116100 Rh5CG198800 Rh5CG199300 Rh5CG202400 Rh5DG102100 Rh5DG102200 Rh5DG102300 Rh5DG102600 Rh5DG102800 Rh5DG181100 Rh5DG181300 Rh5DG181800 Rh5DG184900 Rh5DG185100 Rh6AG256000 Rh6AG299200 Rh6AG299300 Rh6AG300400 Rh6AG371800 Rh6BG383300 Rh6CG303400 Rh6CG314400 Rh6CG385000 Rh6DG297800 Rh6DG372300 Rh7BG046900 Rh7BG312300 Rh7BG312500 Rh7BG430400
rosa_wichuraiana Rw0G009620 Rw0G015730 Rw1G000490 Rw1G006410 Rw1G006700 Rw1G011270 Rw1G011280 Rw1G011310 Rw2G036080 Rw3G002740 Rw3G002750 Rw3G002760 Rw3G002770 Rw3G023580 Rw5G009360 Rw5G009370 Rw5G009380 Rw5G009390 Rw5G009400 Rw5G016550 Rw5G016890 Rw5G016910 Rw5G040760 Rw6G022190 Rw6G025910 Rw6G032400 Rw6G032690 Rw6G032790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 3 cut(s) 869, 1227, 1575
AasI GACNNNNNNGTC 1 cut(s) 1312
AccB7I CCANNNNNTGG 1 cut(s) 2137
AccII CGCG 1 cut(s) 477
AccIII TCCGGA 1 cut(s) 1831
AciI CCGC 6 cut(s) 66, 235, 475, 763, 1289, 1944
AclI AACGTT 1 cut(s) 283
AclWI GGATC 5 cut(s) 215, 442, 797, 1197, 1842
AcsI RAATTY 5 cut(s) 602, 1146, 1569, 1700, 1774
AcuI CTGAAG 3 cut(s) 938, 1785, 1853
AfaI GTAC 1 cut(s) 2078
AfiI CCNNNNNNNGG 5 cut(s) 319, 481, 772, 1142, 2137
AflII CTTAAG 3 cut(s) 893, 1058, 2090
AflIII ACRYGT 1 cut(s) 229
AhlI ACTAGT 1 cut(s) 650
AjnI CCWGG 3 cut(s) 456, 850, 2182
AloI GAACNNNNNNTCC 2 cut(s) 1284, 1316
Alw21I GWGCWC 1 cut(s) 99
Alw26I GTCTC 5 cut(s) 45, 232, 641, 1320, 1641
AlwI GGATC 5 cut(s) 215, 442, 797, 1197, 1842
Ama87I CYCGRG 1 cut(s) 41
Aor13HI TCCGGA 1 cut(s) 1831
AoxI GGCC 3 cut(s) 374, 454, 1627
ApeKI GCWGC 9 cut(s) 257, 260, 338, 1516, 1532, 1605, 1947, 2106, 2150
ApoI RAATTY 5 cut(s) 602, 1146, 1569, 1700, 1774
ArsI GACNNNNNNTTYG 2 cut(s) 1760, 1792
Asp700I GAANNNNTTC 1 cut(s) 951
AspLEI GCGC 2 cut(s) 312, 1605
AspS9I GGNCC 5 cut(s) 62, 454, 775, 848, 2043
AsuHPI GGTGA 2 cut(s) 1036, 1595
AvaI CYCGRG 1 cut(s) 41
AvaII GGWCC 4 cut(s) 62, 775, 848, 2043
AxyI CCTNAGG 1 cut(s) 1395
BaeGI GKGCMC 1 cut(s) 725
BanII GRGCYC 1 cut(s) 99
BauI CACGAG 1 cut(s) 573
BbsI GAAGAC 2 cut(s) 1773, 2134
Bbv12I GWGCWC 1 cut(s) 99
BbvCI CCTCAGC 1 cut(s) 1431
BbvI GCAGC 9 cut(s) 247, 269, 325, 1503, 1544, 1617, 1934, 2118, 2137
BccI CCATC 7 cut(s) 232, 298, 597, 1034, 1169, 1664, 1702
BceAI ACGGC 1 cut(s) 750
BciT130I CCWGG 3 cut(s) 458, 852, 2184
BciVI GTATCC 1 cut(s) 1667
BcoDI GTCTC 5 cut(s) 45, 232, 641, 1320, 1641
BcuI ACTAGT 1 cut(s) 650
BfaI CTAG 2 cut(s) 515, 651
BfmI CTRYAG 1 cut(s) 528
BfrI CTTAAG 3 cut(s) 893, 1058, 2090
BfuI GTATCC 1 cut(s) 1667
Bme1390I CCNGG 3 cut(s) 458, 852, 2184
Bme18I GGWCC 4 cut(s) 62, 775, 848, 2043
BmeT110I CYCGRG 1 cut(s) 41
BmgT120I GGNCC 5 cut(s) 62, 454, 775, 848, 2043
BmiI GGNNCC 5 cut(s) 64, 761, 1072, 1468, 2045
BmrFI CCNGG 3 cut(s) 458, 852, 2184
BmrI ACTGGG 1 cut(s) 1675
BmsI GCATC 7 cut(s) 313, 650, 826, 1276, 1338, 1636, 2042
BmuI ACTGGG 1 cut(s) 1675
BpiI GAAGAC 2 cut(s) 1773, 2134
BpmI CTGGAG 1 cut(s) 921
Bpu10I CCTNAGC 1 cut(s) 1431
BpuEI CTTGAG 2 cut(s) 1229, 1936
BsaAI YACGTR 2 cut(s) 217, 1902
BsaJI CCNNGG 2 cut(s) 806, 2182
BsaWI WCCGGW 2 cut(s) 1469, 1831
BsaXI ACNNNNNCTCC 2 cut(s) 744, 774
Bsc4I CCNNNNNNNGG 5 cut(s) 319, 481, 772, 1142, 2137
Bse118I RCCGGY 1 cut(s) 312
Bse1I ACTGG 4 cut(s) 441, 904, 1670, 1979
Bse21I CCTNAGG 1 cut(s) 1395
Bse3DI GCAATG 1 cut(s) 1688
BseAI TCCGGA 1 cut(s) 1831
BseBI CCWGG 3 cut(s) 458, 852, 2184
BseDI CCNNGG 2 cut(s) 806, 2182
BseGI GGATG 7 cut(s) 154, 328, 437, 471, 1159, 1353, 1675
BseLI CCNNNNNNNGG 5 cut(s) 319, 481, 772, 1142, 2137
BseMI GCAATG 1 cut(s) 1688
BseMII CTCAG 5 cut(s) 369, 854, 1422, 1587, 1833
BseNI ACTGG 4 cut(s) 441, 904, 1670, 1979
BseRI GAGGAG 3 cut(s) 63, 260, 918
BseSI GKGCMC 1 cut(s) 725
BseXI GCAGC 9 cut(s) 247, 269, 325, 1503, 1544, 1617, 1934, 2118, 2137
BsgI GTGCAG 2 cut(s) 1551, 1861
Bsh1236I CGCG 1 cut(s) 477
BshFI GGCC 3 cut(s) 376, 456, 1629
BsiHKAI GWGCWC 1 cut(s) 99
BsiHKCI CYCGRG 1 cut(s) 41
BsiSI CCGG 3 cut(s) 313, 1470, 1832
BslFI GGGAC 3 cut(s) 48, 1724, 2029
BslI CCNNNNNNNGG 5 cut(s) 319, 481, 772, 1142, 2137
BsmAI GTCTC 5 cut(s) 45, 232, 641, 1320, 1641
BsmBI CGTCTC 2 cut(s) 45, 1641
BsmFI GGGAC 3 cut(s) 48, 1724, 2029
BsmI GAATGC 2 cut(s) 176, 1044
BsnI GGCC 3 cut(s) 376, 456, 1629
BsoBI CYCGRG 1 cut(s) 41
Bsp1286I GDGCHC 2 cut(s) 99, 725
Bsp13I TCCGGA 1 cut(s) 1831
Bsp143I GATC 5 cut(s) 220, 434, 802, 1189, 1834
BspACI CCGC 6 cut(s) 66, 235, 475, 763, 1289, 1944
BspANI GGCC 3 cut(s) 376, 456, 1629
BspCNI CTCAG 5 cut(s) 370, 853, 1423, 1588, 1834
BspEI TCCGGA 1 cut(s) 1831
BspFNI CGCG 1 cut(s) 477
BspLI GGNNCC 5 cut(s) 64, 761, 1072, 1468, 2045
BspPI GGATC 5 cut(s) 215, 442, 797, 1197, 1842
BspTI CTTAAG 3 cut(s) 893, 1058, 2090
BsrDI GCAATG 1 cut(s) 1688
BsrFI RCCGGY 1 cut(s) 312
BsrI ACTGG 4 cut(s) 441, 904, 1670, 1979
BssAI RCCGGY 1 cut(s) 312
BssECI CCNNGG 2 cut(s) 806, 2182
BssMI GATC 5 cut(s) 220, 434, 802, 1189, 1834
BssSI CACGAG 1 cut(s) 573
BssT1I CCWWGG 1 cut(s) 806
Bst2BI CACGAG 1 cut(s) 573
Bst2UI CCWGG 3 cut(s) 458, 852, 2184
Bst4CI ACNGT 3 cut(s) 529, 1715, 2081
Bst6I CTCTTC 2 cut(s) 136, 2016
BstAFI CTTAAG 3 cut(s) 893, 1058, 2090
BstAPI GCANNNNNTGC 1 cut(s) 2112
BstBAI YACGTR 2 cut(s) 217, 1902
BstC8I GCNNGC 1 cut(s) 2031
BstF5I GGATG 7 cut(s) 154, 328, 437, 471, 1159, 1353, 1675
BstFNI CGCG 1 cut(s) 477
BstHHI GCGC 2 cut(s) 312, 1605
BstKTI GATC 5 cut(s) 223, 437, 805, 1192, 1837
BstMAI GTCTC 5 cut(s) 45, 232, 641, 1320, 1641
BstMBI GATC 5 cut(s) 220, 434, 802, 1189, 1834
BstMWI GCNNNNNNNGC 4 cut(s) 266, 679, 1732, 2112
BstNI CCWGG 3 cut(s) 458, 852, 2184
BstNSI RCATGY 4 cut(s) 233, 1221, 1523, 1549
BstSCI CCNGG 3 cut(s) 456, 850, 2182
BstSFI CTRYAG 1 cut(s) 528
BstSLI GKGCMC 1 cut(s) 725
BstSNI TACGTA 1 cut(s) 1902
BstUI CGCG 1 cut(s) 477
BstV1I GCAGC 9 cut(s) 247, 269, 325, 1503, 1544, 1617, 1934, 2118, 2137
BstV2I GAAGAC 2 cut(s) 1773, 2134
BstX2I RGATCY 2 cut(s) 220, 1834
BstXI CCANNNNNNTGG 1 cut(s) 1778
BstYI RGATCY 2 cut(s) 220, 1834
Bsu36I CCTNAGG 1 cut(s) 1395
BsuI GTATCC 1 cut(s) 1667
BsuRI GGCC 3 cut(s) 376, 456, 1629
BtsCI GGATG 7 cut(s) 154, 328, 437, 471, 1159, 1353, 1675
BtsIMutI CAGTG 2 cut(s) 448, 1986
Cac8I GCNNGC 1 cut(s) 2031
CfoI GCGC 2 cut(s) 312, 1605
Cfr10I RCCGGY 1 cut(s) 312
Cfr13I GGNCC 5 cut(s) 62, 454, 775, 848, 2043
Csp6I GTAC 1 cut(s) 2077
CviAII CATG 9 cut(s) 138, 230, 656, 965, 1218, 1352, 1520, 1546, 2006
CviQI GTAC 1 cut(s) 2077
DpnI GATC 5 cut(s) 222, 436, 804, 1191, 1836
DpnII GATC 5 cut(s) 220, 434, 802, 1189, 1834
DrdI GACNNNNNNGTC 1 cut(s) 1312
DseDI GACNNNNNNGTC 1 cut(s) 1312
Eam1104I CTCTTC 2 cut(s) 136, 2016
EarI CTCTTC 2 cut(s) 136, 2016
EciI GGCGGA 1 cut(s) 752
Ecl136II GAGCTC 1 cut(s) 97
Eco105I TACGTA 1 cut(s) 1902
Eco130I CCWWGG 1 cut(s) 806
Eco147I AGGCCT 2 cut(s) 376, 1629
Eco24I GRGCYC 1 cut(s) 99
Eco32I GATATC 3 cut(s) 9, 1438, 1658
Eco47I GGWCC 4 cut(s) 62, 775, 848, 2043
Eco53kI GAGCTC 1 cut(s) 97
Eco57I CTGAAG 3 cut(s) 938, 1785, 1853
Eco81I CCTNAGG 1 cut(s) 1395
Eco88I CYCGRG 1 cut(s) 41
EcoICRI GAGCTC 1 cut(s) 97
EcoO109I RGGNCCY 2 cut(s) 454, 775
EcoRI GAATTC 1 cut(s) 1146
EcoRII CCWGG 3 cut(s) 456, 850, 2182
EcoRV GATATC 3 cut(s) 9, 1438, 1658
EcoT14I CCWWGG 1 cut(s) 806
EcoT22I ATGCAT 2 cut(s) 1353, 1551
EcoT38I GRGCYC 1 cut(s) 99
ErhI CCWWGG 1 cut(s) 806
Esp3I CGTCTC 2 cut(s) 45, 1641
FaeI CATG 9 cut(s) 141, 233, 659, 968, 1221, 1355, 1523, 1549, 2009
FaqI GGGAC 3 cut(s) 48, 1724, 2029
FatI CATG 9 cut(s) 137, 229, 655, 964, 1217, 1351, 1519, 1545, 2005
FauI CCCGC 2 cut(s) 73, 1282
FauNDI CATATG 2 cut(s) 536, 1731
FokI GGATG 7 cut(s) 161, 335, 424, 478, 1166, 1360, 1682
FriOI GRGCYC 1 cut(s) 99
FspBI CTAG 2 cut(s) 515, 651
GlaI GCGC 2 cut(s) 311, 1604
GsuI CTGGAG 1 cut(s) 921
HaeIII GGCC 3 cut(s) 376, 456, 1629
HapII CCGG 3 cut(s) 313, 1470, 1832
HhaI GCGC 2 cut(s) 312, 1605
Hin1II CATG 9 cut(s) 141, 233, 659, 968, 1221, 1355, 1523, 1549, 2009
Hin6I GCGC 2 cut(s) 310, 1603
HinP1I GCGC 2 cut(s) 310, 1603
HindIII AAGCTT 3 cut(s) 609, 1922, 2054
HpaII CCGG 3 cut(s) 313, 1470, 1832
HphI GGTGA 2 cut(s) 1036, 1595
Hpy166II GTNNAC 1 cut(s) 1391
Hpy8I GTNNAC 1 cut(s) 1391
HpyAV CCTTC 6 cut(s) 22, 445, 962, 1546, 1619, 1785
HpyCH4III ACNGT 3 cut(s) 529, 1715, 2081
HpyCH4IV ACGT 3 cut(s) 216, 283, 1901
HpyF10VI GCNNNNNNNGC 4 cut(s) 266, 679, 1732, 2112
HpySE526I ACGT 3 cut(s) 216, 283, 1901
Hsp92II CATG 9 cut(s) 141, 233, 659, 968, 1221, 1355, 1523, 1549, 2009
HspAI GCGC 2 cut(s) 310, 1603
Kpn2I TCCGGA 1 cut(s) 1831
Kzo9I GATC 5 cut(s) 220, 434, 802, 1189, 1834
LmnI GCTCC 4 cut(s) 679, 765, 905, 1399
Lsp1109I GCAGC 9 cut(s) 247, 269, 325, 1503, 1544, 1617, 1934, 2118, 2137
LweI GCATC 7 cut(s) 313, 650, 826, 1276, 1338, 1636, 2042
MaeI CTAG 2 cut(s) 515, 651
MaeII ACGT 3 cut(s) 216, 283, 1901
MaeIII GTNAC 1 cut(s) 1271
MalI GATC 5 cut(s) 222, 436, 804, 1191, 1836
MboI GATC 5 cut(s) 220, 434, 802, 1189, 1834
MfeI CAATTG 2 cut(s) 1380, 1476
MflI RGATCY 2 cut(s) 220, 1834
MhlI GDGCHC 2 cut(s) 99, 725
MlyI GAGTC 4 cut(s) 33, 389, 503, 1855
MmeI TCCRAC 1 cut(s) 808
Mph1103I ATGCAT 2 cut(s) 1353, 1551
MroI TCCGGA 1 cut(s) 1831
MroXI GAANNNNTTC 1 cut(s) 951
MseI TTAA 8 cut(s) 405, 663, 894, 935, 1059, 1119, 1959, 2091
MslI CAYNNNNRTG 1 cut(s) 969
MspA1I CMGCKG 1 cut(s) 260
MspCI CTTAAG 3 cut(s) 893, 1058, 2090
MspI CCGG 3 cut(s) 313, 1470, 1832
MspR9I CCNGG 3 cut(s) 458, 852, 2184
MunI CAATTG 2 cut(s) 1380, 1476
Mva1269I GAATGC 2 cut(s) 176, 1044
MvaI CCWGG 3 cut(s) 458, 852, 2184
MvnI CGCG 1 cut(s) 477
MwoI GCNNNNNNNGC 4 cut(s) 266, 679, 1732, 2112
NdeI CATATG 2 cut(s) 536, 1731
NdeII GATC 5 cut(s) 220, 434, 802, 1189, 1834
NlaIII CATG 9 cut(s) 141, 233, 659, 968, 1221, 1355, 1523, 1549, 2009
NlaIV GGNNCC 5 cut(s) 64, 761, 1072, 1468, 2045
NsiI ATGCAT 2 cut(s) 1353, 1551
NspI RCATGY 4 cut(s) 233, 1221, 1523, 1549
PaeR7I CTCGAG 1 cut(s) 41
PceI AGGCCT 2 cut(s) 376, 1629
PciI ACATGT 1 cut(s) 229
PctI GAATGC 2 cut(s) 176, 1044
PdmI GAANNNNTTC 1 cut(s) 951
PfeI GAWTC 9 cut(s) 89, 189, 359, 427, 861, 1132, 1936, 2095, 2123
PflMI CCANNNNNTGG 1 cut(s) 2137
PfoI TCCNGGA 1 cut(s) 850
PleI GAGTC 4 cut(s) 33, 388, 503, 1854
PpsI GAGTC 4 cut(s) 33, 388, 503, 1854
Ppu21I YACGTR 2 cut(s) 217, 1902
PpuMI RGGWCCY 1 cut(s) 775
PscI ACATGT 1 cut(s) 229
PsiI TTATAA 3 cut(s) 869, 1227, 1575
Psp124BI GAGCTC 1 cut(s) 99
Psp1406I AACGTT 1 cut(s) 283
Psp5II RGGWCCY 1 cut(s) 775
Psp6I CCWGG 3 cut(s) 456, 850, 2182
PspGI CCWGG 3 cut(s) 456, 850, 2182
PspN4I GGNNCC 5 cut(s) 64, 761, 1072, 1468, 2045
PspPI GGNCC 5 cut(s) 62, 454, 775, 848, 2043
PspPPI RGGWCCY 1 cut(s) 775
PsuI RGATCY 2 cut(s) 220, 1834
PvuII CAGCTG 1 cut(s) 260
RsaI GTAC 1 cut(s) 2078
RsaNI GTAC 1 cut(s) 2077
RseI CAYNNNNRTG 1 cut(s) 969
SacI GAGCTC 1 cut(s) 99
SaqAI TTAA 8 cut(s) 405, 663, 894, 935, 1059, 1119, 1959, 2091
Sau3AI GATC 5 cut(s) 220, 434, 802, 1189, 1834
Sau96I GGNCC 5 cut(s) 62, 454, 775, 848, 2043
SchI GAGTC 4 cut(s) 33, 389, 503, 1855
ScrFI CCNGG 3 cut(s) 458, 852, 2184
SduI GDGCHC 2 cut(s) 99, 725
SfaNI GCATC 7 cut(s) 313, 650, 826, 1276, 1338, 1636, 2042
SfcI CTRYAG 1 cut(s) 528
Sfr274I CTCGAG 1 cut(s) 41
SgrAI CRCCGGYG 1 cut(s) 312
SinI GGWCC 4 cut(s) 62, 775, 848, 2043
SlaI CTCGAG 1 cut(s) 41
SmiMI CAYNNNNRTG 1 cut(s) 969
SmlI CTYRAG 6 cut(s) 41, 893, 1058, 1208, 1951, 2090
SmoI CTYRAG 6 cut(s) 41, 893, 1058, 1208, 1951, 2090
SnaBI TACGTA 1 cut(s) 1902
SpeI ACTAGT 1 cut(s) 650
SseBI AGGCCT 2 cut(s) 376, 1629
SsiI CCGC 6 cut(s) 66, 235, 475, 763, 1289, 1944
SspMI CTAG 2 cut(s) 515, 651
SstI GAGCTC 1 cut(s) 99
StuI AGGCCT 2 cut(s) 376, 1629
StyD4I CCNGG 3 cut(s) 456, 850, 2182
StyI CCWWGG 1 cut(s) 806
TaaI ACNGT 3 cut(s) 529, 1715, 2081
TaiI ACGT 3 cut(s) 219, 286, 1904
TaqI TCGA 4 cut(s) 5, 42, 168, 288
TaqII GACCGA 1 cut(s) 50
TatI WGTACW 1 cut(s) 2076
TauI GCSGC 2 cut(s) 477, 1947
TfiI GAWTC 9 cut(s) 89, 189, 359, 427, 861, 1132, 1936, 2095, 2123
Tru1I TTAA 8 cut(s) 405, 663, 894, 935, 1059, 1119, 1959, 2091
Tru9I TTAA 8 cut(s) 405, 663, 894, 935, 1059, 1119, 1959, 2091
TscAI CASTG 2 cut(s) 448, 1986
TseI GCWGC 9 cut(s) 257, 260, 338, 1516, 1532, 1605, 1947, 2106, 2150
TspDTI ATGAA 6 cut(s) 482, 953, 954, 960, 1602, 1718
TspGWI ACGGA 4 cut(s) 769, 1038, 1376, 1430
TspRI CASTG 2 cut(s) 448, 1986
Van91I CCANNNNNTGG 1 cut(s) 2137
Vha464I CTTAAG 3 cut(s) 893, 1058, 2090
VpaK11BI GGWCC 4 cut(s) 62, 775, 848, 2043
XapI RAATTY 5 cut(s) 602, 1146, 1569, 1700, 1774
XbaI TCTAGA 1 cut(s) 514
XceI RCATGY 4 cut(s) 233, 1221, 1523, 1549
XhoI CTCGAG 1 cut(s) 41
XmnI GAANNNNTTC 1 cut(s) 951
XspI CTAG 2 cut(s) 515, 651
Zsp2I ATGCAT 2 cut(s) 1353, 1551
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.