TMV resistance protein N-like
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| TIR | PF01582 | 15 - 185 | 6.2e-55 | TIR domain |
| TIR_2 | PF13676 | 18 - 128 | 7.8e-13 | TIR domain |
| NB-ARC | PF00931 | 198 - 367 | 7.9e-18 | NB-ARC domain |
| WHD_ROQ1 | PF23282 | 436 - 508 | 9.7e-23 | Disease resistance protein Roq1-like, winged-helix domain |
| C-JID | PF20160 | 929 - 1083 | 1.4e-16 | C-JID domain |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 2756 |
| AarI | CACCTGC | 2 cut(s) | 190, 548 |
| AatII | GACGTC | 1 cut(s) | 639 |
| Acc36I | ACCTGC | 2 cut(s) | 190, 548 |
| AccII | CGCG | 2 cut(s) | 3111, 3345 |
| AciI | CCGC | 2 cut(s) | 110, 2927 |
| AclI | AACGTT | 1 cut(s) | 2026 |
| AclWI | GGATC | 5 cut(s) | 326, 865, 2236, 2781, 3350 |
| AcsI | RAATTY | 8 cut(s) | 719, 938, 1254, 1828, 2115, 2275, 2799, 3180 |
| AcuI | CTGAAG | 3 cut(s) | 1650, 1937, 2594 |
| AcyI | GRCGYC | 1 cut(s) | 636 |
| AdeI | CACNNNGTG | 1 cut(s) | 258 |
| AfaI | GTAC | 8 cut(s) | 345, 811, 889, 1584, 2032, 2552, 3100, 3158 |
| AfeI | AGCGCT | 1 cut(s) | 572 |
| AfiI | CCNNNNNNNGG | 8 cut(s) | 854, 892, 1768, 1810, 1975, 2218, 2668, 3204 |
| AflII | CTTAAG | 1 cut(s) | 2243 |
| AflIII | ACRYGT | 1 cut(s) | 340 |
| AgeI | ACCGGT | 1 cut(s) | 3167 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 1738 |
| AhlI | ACTAGT | 1 cut(s) | 3419 |
| AjnI | CCWGG | 4 cut(s) | 973, 1114, 1968, 2131 |
| Alw21I | GWGCWC | 6 cut(s) | 279, 423, 1086, 2463, 2529, 2595 |
| Alw44I | GTGCAC | 1 cut(s) | 275 |
| AlwI | GGATC | 5 cut(s) | 326, 865, 2236, 2781, 3350 |
| Ama87I | CYCGRG | 3 cut(s) | 36, 2006, 2201 |
| Aor51HI | AGCGCT | 1 cut(s) | 572 |
| AoxI | GGCC | 3 cut(s) | 970, 1912, 3135 |
| ApaLI | GTGCAC | 1 cut(s) | 275 |
| ApeKI | GCWGC | 7 cut(s) | 5, 8, 449, 1884, 2259, 2310, 2722 |
| ApoI | RAATTY | 8 cut(s) | 719, 938, 1254, 1828, 2115, 2275, 2799, 3180 |
| AseI | ATTAAT | 2 cut(s) | 741, 2937 |
| AsiGI | ACCGGT | 1 cut(s) | 3167 |
| AspLEI | GCGC | 1 cut(s) | 573 |
| AspS9I | GGNCC | 4 cut(s) | 971, 1636, 2945, 3170 |
| AsuC2I | CCSGG | 5 cut(s) | 82, 1539, 2404, 2790, 3360 |
| AsuII | TTCGAA | 1 cut(s) | 723 |
| AvaI | CYCGRG | 3 cut(s) | 36, 2006, 2201 |
| AvaII | GGWCC | 3 cut(s) | 1636, 2945, 3170 |
| AxyI | CCTNAGG | 1 cut(s) | 1767 |
| BaeGI | GKGCMC | 1 cut(s) | 279 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 1931, 1964 |
| BanII | GRGCYC | 5 cut(s) | 1086, 1193, 2463, 2529, 2595 |
| BbsI | GAAGAC | 4 cut(s) | 1227, 1775, 2282, 2288 |
| Bbv12I | GWGCWC | 6 cut(s) | 279, 423, 1086, 2463, 2529, 2595 |
| BbvCI | CCTCAGC | 2 cut(s) | 1974, 2606 |
| BbvI | GCAGC | 5 cut(s) | 461, 1896, 2271, 2297, 2709 |
| BceAI | ACGGC | 2 cut(s) | 340, 870 |
| BciT130I | CCWGG | 4 cut(s) | 975, 1116, 1970, 2133 |
| BclI | TGATCA | 1 cut(s) | 1519 |
| BcnI | CCSGG | 5 cut(s) | 82, 1539, 2404, 2790, 3360 |
| BcuI | ACTAGT | 1 cut(s) | 3419 |
| BfaI | CTAG | 2 cut(s) | 999, 3420 |
| BfmI | CTRYAG | 2 cut(s) | 158, 1563 |
| BfoI | RGCGCY | 1 cut(s) | 574 |
| BfrI | CTTAAG | 1 cut(s) | 2243 |
| BfuAI | ACCTGC | 2 cut(s) | 190, 548 |
| BglII | AGATCT | 4 cut(s) | 1648, 1984, 2413, 2778 |
| BisI | GCNGC | 9 cut(s) | 6, 9, 111, 450, 1885, 2260, 2311, 2723, 2927 |
| BlsI | GCNGC | 9 cut(s) | 7, 10, 112, 451, 1886, 2261, 2312, 2724, 2928 |
| Bme1390I | CCNGG | 9 cut(s) | 82, 975, 1116, 1539, 1970, 2133, 2404, 2790, 3360 |
| Bme18I | GGWCC | 3 cut(s) | 1636, 2945, 3170 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 1738 |
| BmeT110I | CYCGRG | 3 cut(s) | 36, 2006, 2201 |
| BmgT120I | GGNCC | 4 cut(s) | 971, 1636, 2945, 3170 |
| BmiI | GGNNCC | 6 cut(s) | 1192, 1603, 1980, 2968, 3059, 3291 |
| BmrFI | CCNGG | 9 cut(s) | 82, 975, 1116, 1539, 1970, 2133, 2404, 2790, 3360 |
| BmrI | ACTGGG | 3 cut(s) | 1234, 1738, 1819 |
| BmsI | GCATC | 9 cut(s) | 278, 361, 767, 1378, 1467, 1516, 2074, 2118, 3137 |
| BmuI | ACTGGG | 3 cut(s) | 1234, 1738, 1819 |
| BpiI | GAAGAC | 4 cut(s) | 1227, 1775, 2282, 2288 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1706, 1738 |
| BpmI | CTGGAG | 2 cut(s) | 969, 1231 |
| Bpu10I | CCTNAGC | 4 cut(s) | 422, 1621, 1974, 2606 |
| Bpu14I | TTCGAA | 1 cut(s) | 723 |
| BpuEI | CTTGAG | 9 cut(s) | 1100, 1760, 1773, 1913, 2342, 2377, 2641, 2707, 2726 |
| BpuMI | CCSGG | 5 cut(s) | 82, 1539, 2404, 2790, 3360 |
| BsaBI | GATNNNNATC | 2 cut(s) | 960, 2843 |
| BsaHI | GRCGYC | 1 cut(s) | 636 |
| BsaI | GGTCTC | 1 cut(s) | 1778 |
| BsaJI | CCNNGG | 8 cut(s) | 35, 973, 1114, 1185, 1449, 2726, 2881, 3132 |
| BsaWI | WCCGGW | 1 cut(s) | 3167 |
| Bsc4I | CCNNNNNNNGG | 8 cut(s) | 854, 892, 1768, 1810, 1975, 2218, 2668, 3204 |
| Bse118I | RCCGGY | 1 cut(s) | 3167 |
| Bse1I | ACTGG | 6 cut(s) | 96, 1229, 1733, 1814, 2355, 2685 |
| Bse21I | CCTNAGG | 1 cut(s) | 1767 |
| Bse3DI | GCAATG | 2 cut(s) | 684, 1204 |
| Bse8I | GATNNNNATC | 2 cut(s) | 960, 2843 |
| BseBI | CCWGG | 4 cut(s) | 975, 1116, 1970, 2133 |
| BseDI | CCNNGG | 8 cut(s) | 35, 973, 1114, 1185, 1449, 2726, 2881, 3132 |
| BseJI | GATNNNNATC | 2 cut(s) | 960, 2843 |
| BseLI | CCNNNNNNNGG | 8 cut(s) | 854, 892, 1768, 1810, 1975, 2218, 2668, 3204 |
| BseMI | GCAATG | 2 cut(s) | 684, 1204 |
| BseMII | CTCAG | 8 cut(s) | 436, 1781, 1965, 1983, 2078, 2531, 2597, 2606 |
| BseNI | ACTGG | 6 cut(s) | 96, 1229, 1733, 1814, 2355, 2685 |
| BseRI | GAGGAG | 4 cut(s) | 180, 404, 2339, 2847 |
| BseSI | GKGCMC | 1 cut(s) | 279 |
| BseXI | GCAGC | 5 cut(s) | 461, 1896, 2271, 2297, 2709 |
| BseYI | CCCAGC | 2 cut(s) | 573, 1157 |
| BsgI | GTGCAG | 1 cut(s) | 1790 |
| Bsh1236I | CGCG | 2 cut(s) | 3111, 3345 |
| BshFI | GGCC | 3 cut(s) | 972, 1914, 3137 |
| BshTI | ACCGGT | 1 cut(s) | 3167 |
| BsiHKAI | GWGCWC | 6 cut(s) | 279, 423, 1086, 2463, 2529, 2595 |
| BsiHKCI | CYCGRG | 3 cut(s) | 36, 2006, 2201 |
| BsiSI | CCGG | 6 cut(s) | 82, 1539, 2403, 2789, 3168, 3360 |
| BslFI | GGGAC | 4 cut(s) | 647, 1745, 2176, 2844 |
| BslI | CCNNNNNNNGG | 8 cut(s) | 854, 892, 1768, 1810, 1975, 2218, 2668, 3204 |
| BsmBI | CGTCTC | 3 cut(s) | 713, 758, 3331 |
| BsmFI | GGGAC | 4 cut(s) | 647, 1745, 2176, 2844 |
| BsmI | GAATGC | 3 cut(s) | 1414, 1622, 2909 |
| BsnI | GGCC | 3 cut(s) | 972, 1914, 3137 |
| Bso31I | GGTCTC | 1 cut(s) | 1778 |
| BsoBI | CYCGRG | 3 cut(s) | 36, 2006, 2201 |
| Bsp119I | TTCGAA | 1 cut(s) | 723 |
| Bsp1286I | GDGCHC | 7 cut(s) | 279, 423, 1086, 1193, 2463, 2529, 2595 |
| Bsp1407I | TGTACA | 2 cut(s) | 2030, 2550 |
| Bsp19I | CCATGG | 1 cut(s) | 2726 |
| Bsp68I | TCGCGA | 1 cut(s) | 3111 |
| BspACI | CCGC | 2 cut(s) | 110, 2927 |
| BspANI | GGCC | 3 cut(s) | 972, 1914, 3137 |
| BspCNI | CTCAG | 8 cut(s) | 435, 1780, 1966, 1984, 2079, 2532, 2598, 2607 |
| BspFNI | CGCG | 2 cut(s) | 3111, 3345 |
| BspLI | GGNNCC | 6 cut(s) | 1192, 1603, 1980, 2968, 3059, 3291 |
| BspMAI | CTGCAG | 2 cut(s) | 162, 1567 |
| BspMI | ACCTGC | 2 cut(s) | 190, 548 |
| BspPI | GGATC | 5 cut(s) | 326, 865, 2236, 2781, 3350 |
| BspT104I | TTCGAA | 1 cut(s) | 723 |
| BspTI | CTTAAG | 1 cut(s) | 2243 |
| BspTNI | GGTCTC | 1 cut(s) | 1778 |
| BsrDI | GCAATG | 2 cut(s) | 684, 1204 |
| BsrFI | RCCGGY | 1 cut(s) | 3167 |
| BsrGI | TGTACA | 2 cut(s) | 2030, 2550 |
| BsrI | ACTGG | 6 cut(s) | 96, 1229, 1733, 1814, 2355, 2685 |
| BssAI | RCCGGY | 1 cut(s) | 3167 |
| BssECI | CCNNGG | 8 cut(s) | 35, 973, 1114, 1185, 1449, 2726, 2881, 3132 |
| BssNI | GRCGYC | 1 cut(s) | 636 |
| BssT1I | CCWWGG | 2 cut(s) | 1185, 2726 |
| Bst2UI | CCWGG | 4 cut(s) | 975, 1116, 1970, 2133 |
| Bst4CI | ACNGT | 4 cut(s) | 303, 707, 1710, 3202 |
| Bst6I | CTCTTC | 2 cut(s) | 253, 3361 |
| BstACI | GRCGYC | 1 cut(s) | 636 |
| BstAFI | CTTAAG | 1 cut(s) | 2243 |
| BstAUI | TGTACA | 2 cut(s) | 2030, 2550 |
| BstBI | TTCGAA | 1 cut(s) | 723 |
| BstDSI | CCRYGG | 2 cut(s) | 1449, 2726 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 1766, 1973 |
| BstFNI | CGCG | 2 cut(s) | 3111, 3345 |
| BstH2I | RGCGCY | 1 cut(s) | 574 |
| BstHHI | GCGC | 1 cut(s) | 573 |
| BstNI | CCWGG | 4 cut(s) | 975, 1116, 1970, 2133 |
| BstNSI | RCATGY | 4 cut(s) | 344, 437, 1344, 1948 |
| BstSCI | CCNGG | 9 cut(s) | 80, 973, 1114, 1537, 1968, 2131, 2402, 2788, 3358 |
| BstSFI | CTRYAG | 2 cut(s) | 158, 1563 |
| BstSLI | GKGCMC | 1 cut(s) | 279 |
| BstUI | CGCG | 2 cut(s) | 3111, 3345 |
| BstV1I | GCAGC | 5 cut(s) | 461, 1896, 2271, 2297, 2709 |
| BstV2I | GAAGAC | 4 cut(s) | 1227, 1775, 2282, 2288 |
| BstX2I | RGATCY | 5 cut(s) | 331, 1648, 1984, 2413, 2778 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1969 |
| BstYI | RGATCY | 5 cut(s) | 331, 1648, 1984, 2413, 2778 |
| Bsu36I | CCTNAGG | 1 cut(s) | 1767 |
| BsuRI | GGCC | 3 cut(s) | 972, 1914, 3137 |
| BtgI | CCRYGG | 2 cut(s) | 1449, 2726 |
| BtgZI | GCGATG | 1 cut(s) | 1321 |
| BtsIMutI | CAGTG | 4 cut(s) | 1807, 2348, 2678, 3198 |
| BtuMI | TCGCGA | 1 cut(s) | 3111 |
| BveI | ACCTGC | 2 cut(s) | 190, 548 |
| CfoI | GCGC | 1 cut(s) | 573 |
| Cfr10I | RCCGGY | 1 cut(s) | 3167 |
| Cfr13I | GGNCC | 4 cut(s) | 971, 1636, 2945, 3170 |
| CpoI | CGGWCCG | 1 cut(s) | 3170 |
| CseI | GACGC | 1 cut(s) | 3351 |
| Csp6I | GTAC | 8 cut(s) | 344, 810, 888, 1583, 2031, 2551, 3099, 3157 |
| CspAI | ACCGGT | 1 cut(s) | 3167 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1125, 1160 |
| CspI | CGGWCCG | 1 cut(s) | 3170 |
| CviQI | GTAC | 8 cut(s) | 344, 810, 888, 1583, 2031, 2551, 3099, 3157 |
| DraIII | CACNNNGTG | 1 cut(s) | 258 |
| DriI | GACNNNNNGTC | 1 cut(s) | 1738 |
| Eam1104I | CTCTTC | 2 cut(s) | 253, 3361 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 1738 |
| EarI | CTCTTC | 2 cut(s) | 253, 3361 |
| Ecl136II | GAGCTC | 4 cut(s) | 1084, 2461, 2527, 2593 |
| Eco130I | CCWWGG | 2 cut(s) | 1185, 2726 |
| Eco147I | AGGCCT | 2 cut(s) | 1914, 3137 |
| Eco24I | GRGCYC | 5 cut(s) | 1086, 1193, 2463, 2529, 2595 |
| Eco31I | GGTCTC | 1 cut(s) | 1778 |
| Eco32I | GATATC | 3 cut(s) | 28, 175, 3319 |
| Eco47I | GGWCC | 3 cut(s) | 1636, 2945, 3170 |
| Eco47III | AGCGCT | 1 cut(s) | 572 |
| Eco53kI | GAGCTC | 4 cut(s) | 1084, 2461, 2527, 2593 |
| Eco57I | CTGAAG | 3 cut(s) | 1650, 1937, 2594 |
| Eco81I | CCTNAGG | 1 cut(s) | 1767 |
| Eco88I | CYCGRG | 3 cut(s) | 36, 2006, 2201 |
| EcoICRI | GAGCTC | 4 cut(s) | 1084, 2461, 2527, 2593 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 1766, 1973 |
| EcoRI | GAATTC | 3 cut(s) | 719, 1828, 2275 |
| EcoRII | CCWGG | 4 cut(s) | 973, 1114, 1968, 2131 |
| EcoRV | GATATC | 3 cut(s) | 28, 175, 3319 |
| EcoT14I | CCWWGG | 2 cut(s) | 1185, 2726 |
| EcoT22I | ATGCAT | 3 cut(s) | 376, 1482, 2900 |
| EcoT38I | GRGCYC | 5 cut(s) | 1086, 1193, 2463, 2529, 2595 |
| ErhI | CCWWGG | 2 cut(s) | 1185, 2726 |
| Esp3I | CGTCTC | 3 cut(s) | 713, 758, 3331 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 1746, 1778, 2248, 2280 |
| FaqI | GGGAC | 4 cut(s) | 647, 1745, 2176, 2844 |
| FauNDI | CATATG | 1 cut(s) | 1875 |
| FbaI | TGATCA | 1 cut(s) | 1519 |
| Fnu4HI | GCNGC | 9 cut(s) | 6, 9, 111, 450, 1885, 2260, 2311, 2723, 2927 |
| FriOI | GRGCYC | 5 cut(s) | 1086, 1193, 2463, 2529, 2595 |
| Fsp4HI | GCNGC | 9 cut(s) | 6, 9, 111, 450, 1885, 2260, 2311, 2723, 2927 |
| FspBI | CTAG | 2 cut(s) | 999, 3420 |
| GlaI | GCGC | 1 cut(s) | 572 |
| GluI | GCNGC | 9 cut(s) | 6, 9, 111, 450, 1885, 2260, 2311, 2723, 2927 |
| GsaI | CCCAGC | 2 cut(s) | 577, 1161 |
| GsuI | CTGGAG | 2 cut(s) | 969, 1231 |
| HaeII | RGCGCY | 1 cut(s) | 574 |
| HaeIII | GGCC | 3 cut(s) | 972, 1914, 3137 |
| HapII | CCGG | 6 cut(s) | 82, 1539, 2403, 2789, 3168, 3360 |
| HgaI | GACGC | 1 cut(s) | 3351 |
| HhaI | GCGC | 1 cut(s) | 573 |
| Hin1I | GRCGYC | 1 cut(s) | 636 |
| Hin6I | GCGC | 1 cut(s) | 571 |
| HinP1I | GCGC | 1 cut(s) | 571 |
| HincII | GTYRAC | 1 cut(s) | 1750 |
| HindII | GTYRAC | 1 cut(s) | 1750 |
| HindIII | AAGCTT | 4 cut(s) | 726, 1933, 2075, 2849 |
| HpaII | CCGG | 6 cut(s) | 82, 1539, 2403, 2789, 3168, 3360 |
| Hpy166II | GTNNAC | 7 cut(s) | 277, 299, 640, 1560, 1583, 1750, 1759 |
| Hpy8I | GTNNAC | 7 cut(s) | 277, 299, 640, 1560, 1583, 1750, 1759 |
| Hpy99I | CGWCG | 2 cut(s) | 2826, 3345 |
| HpyCH4III | ACNGT | 4 cut(s) | 303, 707, 1710, 3202 |
| HpyCH4IV | ACGT | 4 cut(s) | 636, 1065, 2026, 2824 |
| HpySE526I | ACGT | 4 cut(s) | 636, 1065, 2026, 2824 |
| Hsp92I | GRCGYC | 1 cut(s) | 636 |
| HspAI | GCGC | 1 cut(s) | 571 |
| Ksp22I | TGATCA | 1 cut(s) | 1519 |
| Lsp1109I | GCAGC | 5 cut(s) | 461, 1896, 2271, 2297, 2709 |
| LweI | GCATC | 9 cut(s) | 278, 361, 767, 1378, 1467, 1516, 2074, 2118, 3137 |
| MaeI | CTAG | 2 cut(s) | 999, 3420 |
| MaeII | ACGT | 4 cut(s) | 636, 1065, 2026, 2824 |
| MaeIII | GTNAC | 7 cut(s) | 991, 1343, 1704, 1718, 2671, 2885, 2990 |
| MfeI | CAATTG | 1 cut(s) | 1611 |
| MflI | RGATCY | 5 cut(s) | 331, 1648, 1984, 2413, 2778 |
| MhlI | GDGCHC | 7 cut(s) | 279, 423, 1086, 1193, 2463, 2529, 2595 |
| MmeI | TCCRAC | 2 cut(s) | 559, 1297 |
| Mph1103I | ATGCAT | 3 cut(s) | 376, 1482, 2900 |
| MslI | CAYNNNNRTG | 7 cut(s) | 105, 527, 1433, 1448, 1475, 1631, 1812 |
| MspCI | CTTAAG | 1 cut(s) | 2243 |
| MspI | CCGG | 6 cut(s) | 82, 1539, 2403, 2789, 3168, 3360 |
| MspR9I | CCNGG | 9 cut(s) | 82, 975, 1116, 1539, 1970, 2133, 2404, 2790, 3360 |
| MunI | CAATTG | 1 cut(s) | 1611 |
| Mva1269I | GAATGC | 3 cut(s) | 1414, 1622, 2909 |
| MvaI | CCWGG | 4 cut(s) | 975, 1116, 1970, 2133 |
| MvnI | CGCG | 2 cut(s) | 3111, 3345 |
| NciI | CCSGG | 5 cut(s) | 82, 1539, 2404, 2790, 3360 |
| NcoI | CCATGG | 1 cut(s) | 2726 |
| NdeI | CATATG | 1 cut(s) | 1875 |
| NlaIV | GGNNCC | 6 cut(s) | 1192, 1603, 1980, 2968, 3059, 3291 |
| NmuCI | GTSAC | 2 cut(s) | 2671, 2990 |
| NruI | TCGCGA | 1 cut(s) | 3111 |
| NsiI | ATGCAT | 3 cut(s) | 376, 1482, 2900 |
| NspI | RCATGY | 4 cut(s) | 344, 437, 1344, 1948 |
| NspV | TTCGAA | 1 cut(s) | 723 |
| PaeR7I | CTCGAG | 2 cut(s) | 2006, 2201 |
| PaqCI | CACCTGC | 2 cut(s) | 190, 548 |
| PceI | AGGCCT | 2 cut(s) | 1914, 3137 |
| PciI | ACATGT | 1 cut(s) | 340 |
| PctI | GAATGC | 3 cut(s) | 1414, 1622, 2909 |
| PfeI | GAWTC | 8 cut(s) | 206, 470, 491, 984, 1467, 1534, 1800, 1858 |
| PfoI | TCCNGGA | 2 cut(s) | 1537, 2788 |
| PinAI | ACCGGT | 1 cut(s) | 3167 |
| PkrI | GCNGC | 9 cut(s) | 7, 10, 112, 451, 1886, 2261, 2312, 2724, 2928 |
| PscI | ACATGT | 1 cut(s) | 340 |
| PshBI | ATTAAT | 2 cut(s) | 741, 2937 |
| PsiI | TTATAA | 1 cut(s) | 2756 |
| Psp124BI | GAGCTC | 4 cut(s) | 1086, 2463, 2529, 2595 |
| Psp1406I | AACGTT | 1 cut(s) | 2026 |
| Psp6I | CCWGG | 4 cut(s) | 973, 1114, 1968, 2131 |
| PspFI | CCCAGC | 2 cut(s) | 573, 1157 |
| PspGI | CCWGG | 4 cut(s) | 973, 1114, 1968, 2131 |
| PspN4I | GGNNCC | 6 cut(s) | 1192, 1603, 1980, 2968, 3059, 3291 |
| PspPI | GGNCC | 4 cut(s) | 971, 1636, 2945, 3170 |
| PstI | CTGCAG | 2 cut(s) | 162, 1567 |
| PsuI | RGATCY | 5 cut(s) | 331, 1648, 1984, 2413, 2778 |
| RruI | TCGCGA | 1 cut(s) | 3111 |
| RsaI | GTAC | 8 cut(s) | 345, 811, 889, 1584, 2032, 2552, 3100, 3158 |
| RsaNI | GTAC | 8 cut(s) | 344, 810, 888, 1583, 2031, 2551, 3099, 3157 |
| RseI | CAYNNNNRTG | 7 cut(s) | 105, 527, 1433, 1448, 1475, 1631, 1812 |
| Rsr2I | CGGWCCG | 1 cut(s) | 3170 |
| RsrII | CGGWCCG | 1 cut(s) | 3170 |
| SacI | GAGCTC | 4 cut(s) | 1086, 2463, 2529, 2595 |
| SatI | GCNGC | 9 cut(s) | 6, 9, 111, 450, 1885, 2260, 2311, 2723, 2927 |
| Sau96I | GGNCC | 4 cut(s) | 971, 1636, 2945, 3170 |
| ScrFI | CCNGG | 9 cut(s) | 82, 975, 1116, 1539, 1970, 2133, 2404, 2790, 3360 |
| SduI | GDGCHC | 7 cut(s) | 279, 423, 1086, 1193, 2463, 2529, 2595 |
| SfaNI | GCATC | 9 cut(s) | 278, 361, 767, 1378, 1467, 1516, 2074, 2118, 3137 |
| SfcI | CTRYAG | 2 cut(s) | 158, 1563 |
| Sfr274I | CTCGAG | 2 cut(s) | 2006, 2201 |
| SfuI | TTCGAA | 1 cut(s) | 723 |
| SinI | GGWCC | 3 cut(s) | 1636, 2945, 3170 |
| SlaI | CTCGAG | 2 cut(s) | 2006, 2201 |
| SmiMI | CAYNNNNRTG | 7 cut(s) | 105, 527, 1433, 1448, 1475, 1631, 1812 |
| SpeI | ACTAGT | 1 cut(s) | 3419 |
| SseBI | AGGCCT | 2 cut(s) | 1914, 3137 |
| SsiI | CCGC | 2 cut(s) | 110, 2927 |
| SspI | AATATT | 2 cut(s) | 2251, 2941 |
| SspMI | CTAG | 2 cut(s) | 999, 3420 |
| SstI | GAGCTC | 4 cut(s) | 1086, 2463, 2529, 2595 |
| StuI | AGGCCT | 2 cut(s) | 1914, 3137 |
| StyD4I | CCNGG | 9 cut(s) | 80, 973, 1114, 1537, 1968, 2131, 2402, 2788, 3358 |
| StyI | CCWWGG | 2 cut(s) | 1185, 2726 |
| TaaI | ACNGT | 4 cut(s) | 303, 707, 1710, 3202 |
| TaiI | ACGT | 4 cut(s) | 639, 1068, 2029, 2827 |
| TatI | WGTACW | 4 cut(s) | 1582, 2030, 2550, 3098 |
| TauI | GCSGC | 2 cut(s) | 113, 2929 |
| TfiI | GAWTC | 8 cut(s) | 206, 470, 491, 984, 1467, 1534, 1800, 1858 |
| TscAI | CASTG | 4 cut(s) | 1814, 2355, 2685, 3205 |
| TseFI | GTSAC | 2 cut(s) | 2671, 2990 |
| TseI | GCWGC | 7 cut(s) | 5, 8, 449, 1884, 2259, 2310, 2722 |
| Tsp45I | GTSAC | 2 cut(s) | 2671, 2990 |
| TspGWI | ACGGA | 4 cut(s) | 1183, 1438, 2201, 2853 |
| TspRI | CASTG | 4 cut(s) | 1814, 2355, 2685, 3205 |
| Vha464I | CTTAAG | 1 cut(s) | 2243 |
| VneI | GTGCAC | 1 cut(s) | 275 |
| VpaK11BI | GGWCC | 3 cut(s) | 1636, 2945, 3170 |
| VspI | ATTAAT | 2 cut(s) | 741, 2937 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 1766, 1973 |
| XapI | RAATTY | 8 cut(s) | 719, 938, 1254, 1828, 2115, 2275, 2799, 3180 |
| XceI | RCATGY | 4 cut(s) | 344, 437, 1344, 1948 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 259 |
| XhoI | CTCGAG | 2 cut(s) | 2006, 2201 |
| XspI | CTAG | 2 cut(s) | 999, 3420 |
| ZraI | GACGTC | 1 cut(s) | 637 |
| Zsp2I | ATGCAT | 3 cut(s) | 376, 1482, 2900 |