TMV resistance protein N-like
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| C-JID | PF20160 | 505 - 655 | 8.5e-18 | C-JID domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1364 |
| Acc36I | ACCTGC | 1 cut(s) | 749 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 336 |
| AccII | CGCG | 1 cut(s) | 1833 |
| AccIII | TCCGGA | 1 cut(s) | 715 |
| AcoI | YGGCCR | 1 cut(s) | 140 |
| AcsI | RAATTY | 6 cut(s) | 534, 562, 849, 1009, 1309, 1527 |
| AcuI | CTGAAG | 3 cut(s) | 408, 522, 671 |
| AcvI | CACGTG | 1 cut(s) | 1229 |
| AfaI | GTAC | 4 cut(s) | 136, 766, 887, 1880 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 336, 709, 1920 |
| AflII | CTTAAG | 1 cut(s) | 977 |
| AgeI | ACCGGT | 1 cut(s) | 1322 |
| AhlI | ACTAGT | 1 cut(s) | 254 |
| AjnI | CCWGG | 5 cut(s) | 185, 702, 865, 1089, 1155 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 872, 904, 1959, 1991 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 173, 205 |
| Alw21I | GWGCWC | 1 cut(s) | 1393 |
| Alw26I | GTCTC | 7 cut(s) | 512, 938, 1241, 1258, 1331, 1945, 2047 |
| Alw44I | GTGCAC | 1 cut(s) | 1389 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1451 |
| Ama87I | CYCGRG | 3 cut(s) | 740, 935, 1739 |
| Aor13HI | TCCGGA | 1 cut(s) | 715 |
| AoxI | GGCC | 3 cut(s) | 140, 646, 1857 |
| ApaLI | GTGCAC | 1 cut(s) | 1389 |
| ApeKI | GCWGC | 7 cut(s) | 152, 993, 1038, 1135, 1198, 1233, 1277 |
| ApoI | RAATTY | 6 cut(s) | 534, 562, 849, 1009, 1309, 1527 |
| AsiGI | ACCGGT | 1 cut(s) | 1322 |
| AspLEI | GCGC | 1 cut(s) | 1081 |
| AsuC2I | CCSGG | 1 cut(s) | 1518 |
| AsuHPI | GGTGA | 1 cut(s) | 1936 |
| AsuII | TTCGAA | 1 cut(s) | 126 |
| AvaI | CYCGRG | 3 cut(s) | 740, 935, 1739 |
| BaeGI | GKGCMC | 1 cut(s) | 1393 |
| BamHI | GGATCC | 2 cut(s) | 394, 1672 |
| BbrPI | CACGTG | 1 cut(s) | 1229 |
| BbsI | GAAGAC | 3 cut(s) | 509, 1172, 1491 |
| Bbv12I | GWGCWC | 1 cut(s) | 1393 |
| BbvCI | CCTCAGC | 1 cut(s) | 708 |
| BbvI | GCAGC | 7 cut(s) | 164, 980, 1025, 1122, 1185, 1220, 1289 |
| BccI | CCATC | 5 cut(s) | 542, 580, 1554, 1704, 2052 |
| BceAI | ACGGC | 1 cut(s) | 155 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1205, 1239 |
| BciT130I | CCWGG | 5 cut(s) | 187, 704, 867, 1091, 1157 |
| BcnI | CCSGG | 1 cut(s) | 1518 |
| BcoDI | GTCTC | 7 cut(s) | 512, 938, 1241, 1258, 1331, 1945, 2047 |
| BcuI | ACTAGT | 1 cut(s) | 254 |
| BfaI | CTAG | 3 cut(s) | 255, 380, 1244 |
| BfmI | CTRYAG | 2 cut(s) | 1275, 1443 |
| BfrI | CTTAAG | 1 cut(s) | 977 |
| BfuAI | ACCTGC | 1 cut(s) | 749 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 1144 |
| BglII | AGATCT | 1 cut(s) | 406 |
| BisI | GCNGC | 7 cut(s) | 153, 994, 1039, 1136, 1199, 1234, 1278 |
| BlsI | GCNGC | 7 cut(s) | 154, 995, 1040, 1137, 1200, 1235, 1279 |
| Bme1390I | CCNGG | 6 cut(s) | 187, 704, 867, 1091, 1157, 1518 |
| BmeT110I | CYCGRG | 3 cut(s) | 740, 935, 1739 |
| BmiI | GGNNCC | 3 cut(s) | 396, 714, 1674 |
| BmrFI | CCNGG | 6 cut(s) | 187, 704, 867, 1091, 1157, 1518 |
| BmrI | ACTGGG | 2 cut(s) | 553, 1672 |
| BmsI | GCATC | 7 cut(s) | 67, 429, 687, 852, 1213, 1402, 1859 |
| BmuI | ACTGGG | 2 cut(s) | 553, 1672 |
| BpiI | GAAGAC | 3 cut(s) | 509, 1172, 1491 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1238, 1270 |
| BpmI | CTGGAG | 2 cut(s) | 896, 1103 |
| Bpu10I | CCTNAGC | 1 cut(s) | 708 |
| Bpu14I | TTCGAA | 1 cut(s) | 126 |
| BpuEI | CTTGAG | 8 cut(s) | 348, 443, 494, 507, 647, 1046, 1070, 1240 |
| BpuMI | CCSGG | 1 cut(s) | 1518 |
| Bsa29I | ATCGAT | 1 cut(s) | 681 |
| BsaAI | YACGTR | 1 cut(s) | 1229 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1571 |
| BsaI | GGTCTC | 2 cut(s) | 512, 1331 |
| BsaJI | CCNNGG | 5 cut(s) | 390, 1202, 1609, 1738, 1854 |
| BsaWI | WCCGGW | 2 cut(s) | 715, 1322 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 173, 203, 869, 899 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 336, 709, 1920 |
| Bse118I | RCCGGY | 1 cut(s) | 1322 |
| Bse1I | ACTGG | 4 cut(s) | 482, 548, 1127, 1678 |
| Bse3DI | GCAATG | 3 cut(s) | 207, 1497, 1914 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1571 |
| BseAI | TCCGGA | 1 cut(s) | 715 |
| BseBI | CCWGG | 5 cut(s) | 187, 704, 867, 1091, 1157 |
| BseCI | ATCGAT | 1 cut(s) | 681 |
| BseDI | CCNNGG | 5 cut(s) | 390, 1202, 1609, 1738, 1854 |
| BseGI | GGATG | 5 cut(s) | 553, 1228, 1545, 1565, 1850 |
| BseJI | GATNNNNATC | 1 cut(s) | 1571 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 336, 709, 1920 |
| BseMI | GCAATG | 3 cut(s) | 207, 1497, 1914 |
| BseMII | CTCAG | 3 cut(s) | 699, 818, 2089 |
| BseNI | ACTGG | 4 cut(s) | 482, 548, 1127, 1678 |
| BseRI | GAGGAG | 1 cut(s) | 1575 |
| BseSI | GKGCMC | 1 cut(s) | 1393 |
| BseXI | GCAGC | 7 cut(s) | 164, 980, 1025, 1122, 1185, 1220, 1289 |
| BsgI | GTGCAG | 3 cut(s) | 524, 1219, 1437 |
| Bsh1236I | CGCG | 1 cut(s) | 1833 |
| BshFI | GGCC | 3 cut(s) | 142, 648, 1859 |
| BshTI | ACCGGT | 1 cut(s) | 1322 |
| BshVI | ATCGAT | 1 cut(s) | 681 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1393 |
| BsiHKCI | CYCGRG | 3 cut(s) | 740, 935, 1739 |
| BsiSI | CCGG | 3 cut(s) | 716, 1323, 1517 |
| BslFI | GGGAC | 2 cut(s) | 1884, 2075 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 336, 709, 1920 |
| BsmAI | GTCTC | 7 cut(s) | 512, 938, 1241, 1258, 1331, 1945, 2047 |
| BsmBI | CGTCTC | 1 cut(s) | 2047 |
| BsmFI | GGGAC | 2 cut(s) | 1884, 2075 |
| BsmI | GAATGC | 2 cut(s) | 380, 1637 |
| BsnI | GGCC | 3 cut(s) | 142, 648, 1859 |
| Bso31I | GGTCTC | 2 cut(s) | 512, 1331 |
| BsoBI | CYCGRG | 3 cut(s) | 740, 935, 1739 |
| Bsp119I | TTCGAA | 1 cut(s) | 126 |
| Bsp1286I | GDGCHC | 1 cut(s) | 1393 |
| Bsp13I | TCCGGA | 1 cut(s) | 715 |
| Bsp1407I | TGTACA | 1 cut(s) | 764 |
| Bsp19I | CCATGG | 2 cut(s) | 390, 1202 |
| Bsp68I | TCGCGA | 1 cut(s) | 1833 |
| BspANI | GGCC | 3 cut(s) | 142, 648, 1859 |
| BspCNI | CTCAG | 3 cut(s) | 700, 819, 2088 |
| BspDI | ATCGAT | 1 cut(s) | 681 |
| BspEI | TCCGGA | 1 cut(s) | 715 |
| BspFNI | CGCG | 1 cut(s) | 1833 |
| BspLI | GGNNCC | 3 cut(s) | 396, 714, 1674 |
| BspMAI | CTGCAG | 2 cut(s) | 1279, 1447 |
| BspMI | ACCTGC | 1 cut(s) | 749 |
| BspT104I | TTCGAA | 1 cut(s) | 126 |
| BspTI | CTTAAG | 1 cut(s) | 977 |
| BspTNI | GGTCTC | 2 cut(s) | 512, 1331 |
| BsrDI | GCAATG | 3 cut(s) | 207, 1497, 1914 |
| BsrFI | RCCGGY | 1 cut(s) | 1322 |
| BsrGI | TGTACA | 1 cut(s) | 764 |
| BsrI | ACTGG | 4 cut(s) | 482, 548, 1127, 1678 |
| BssAI | RCCGGY | 1 cut(s) | 1322 |
| BssECI | CCNNGG | 5 cut(s) | 390, 1202, 1609, 1738, 1854 |
| BssT1I | CCWWGG | 2 cut(s) | 390, 1202 |
| Bst2UI | CCWGG | 5 cut(s) | 187, 704, 867, 1091, 1157 |
| Bst4CI | ACNGT | 2 cut(s) | 68, 1252 |
| BstAFI | CTTAAG | 1 cut(s) | 977 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1451 |
| BstAUI | TGTACA | 1 cut(s) | 764 |
| BstBAI | YACGTR | 1 cut(s) | 1229 |
| BstBI | TTCGAA | 1 cut(s) | 126 |
| BstC8I | GCNNGC | 2 cut(s) | 281, 2095 |
| BstDEI | CTNAG | 9 cut(s) | 449, 530, 696, 708, 726, 827, 1421, 2049, 2075 |
| BstDSI | CCRYGG | 2 cut(s) | 390, 1202 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 707 |
| BstF5I | GGATG | 5 cut(s) | 553, 1228, 1545, 1565, 1850 |
| BstFNI | CGCG | 1 cut(s) | 1833 |
| BstHHI | GCGC | 1 cut(s) | 1081 |
| BstMAI | GTCTC | 7 cut(s) | 512, 938, 1241, 1258, 1331, 1945, 2047 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 248, 675, 1066, 1132, 1144, 1204, 1451, 1856 |
| BstNI | CCWGG | 5 cut(s) | 187, 704, 867, 1091, 1157 |
| BstNSI | RCATGY | 1 cut(s) | 283 |
| BstSCI | CCNGG | 6 cut(s) | 185, 702, 865, 1089, 1155, 1516 |
| BstSFI | CTRYAG | 2 cut(s) | 1275, 1443 |
| BstSLI | GKGCMC | 1 cut(s) | 1393 |
| BstUI | CGCG | 1 cut(s) | 1833 |
| BstV1I | GCAGC | 7 cut(s) | 164, 980, 1025, 1122, 1185, 1220, 1289 |
| BstV2I | GAAGAC | 3 cut(s) | 509, 1172, 1491 |
| BstX2I | RGATCY | 5 cut(s) | 394, 406, 718, 955, 1672 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 391 |
| BstYI | RGATCY | 5 cut(s) | 394, 406, 718, 955, 1672 |
| Bsu15I | ATCGAT | 1 cut(s) | 681 |
| BsuRI | GGCC | 3 cut(s) | 142, 648, 1859 |
| BsuTUI | ATCGAT | 1 cut(s) | 681 |
| BtgI | CCRYGG | 2 cut(s) | 390, 1202 |
| BtgZI | GCGATG | 1 cut(s) | 1848 |
| BtsCI | GGATG | 5 cut(s) | 553, 1228, 1545, 1565, 1850 |
| BtsI | GCAGTG | 1 cut(s) | 1454 |
| BtsIMutI | CAGTG | 3 cut(s) | 541, 1454, 2083 |
| BtuMI | TCGCGA | 1 cut(s) | 1833 |
| BveI | ACCTGC | 1 cut(s) | 749 |
| Cac8I | GCNNGC | 2 cut(s) | 281, 2095 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1451 |
| CfoI | GCGC | 1 cut(s) | 1081 |
| Cfr10I | RCCGGY | 1 cut(s) | 1322 |
| ClaI | ATCGAT | 1 cut(s) | 681 |
| CseI | GACGC | 1 cut(s) | 1496 |
| CsiI | ACCWGGT | 1 cut(s) | 1155 |
| Csp6I | GTAC | 4 cut(s) | 135, 765, 886, 1879 |
| CspAI | ACCGGT | 1 cut(s) | 1322 |
| CviAII | CATG | 9 cut(s) | 11, 209, 280, 385, 391, 1203, 1355, 1372, 1775 |
| CviQI | GTAC | 4 cut(s) | 135, 765, 886, 1879 |
| DdeI | CTNAG | 9 cut(s) | 449, 530, 696, 708, 726, 827, 1421, 2049, 2075 |
| EaeI | YGGCCR | 1 cut(s) | 140 |
| Eco130I | CCWWGG | 2 cut(s) | 390, 1202 |
| Eco147I | AGGCCT | 2 cut(s) | 648, 1859 |
| Eco31I | GGTCTC | 2 cut(s) | 512, 1331 |
| Eco32I | GATATC | 3 cut(s) | 105, 1573, 2035 |
| Eco57I | CTGAAG | 3 cut(s) | 408, 522, 671 |
| Eco72I | CACGTG | 1 cut(s) | 1229 |
| Eco88I | CYCGRG | 3 cut(s) | 740, 935, 1739 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 707 |
| EcoRI | GAATTC | 4 cut(s) | 534, 562, 1009, 1309 |
| EcoRII | CCWGG | 5 cut(s) | 185, 702, 865, 1089, 1155 |
| EcoRV | GATATC | 3 cut(s) | 105, 1573, 2035 |
| EcoT14I | CCWWGG | 2 cut(s) | 390, 1202 |
| EcoT22I | ATGCAT | 2 cut(s) | 444, 1628 |
| ErhI | CCWWGG | 2 cut(s) | 390, 1202 |
| Esp3I | CGTCTC | 1 cut(s) | 2047 |
| FaeI | CATG | 9 cut(s) | 14, 212, 283, 388, 394, 1206, 1358, 1375, 1778 |
| FaqI | GGGAC | 2 cut(s) | 1884, 2075 |
| FatI | CATG | 9 cut(s) | 10, 208, 279, 384, 390, 1202, 1354, 1371, 1774 |
| FauNDI | CATATG | 1 cut(s) | 343 |
| Fnu4HI | GCNGC | 7 cut(s) | 153, 994, 1039, 1136, 1199, 1234, 1278 |
| FokI | GGATG | 5 cut(s) | 560, 1235, 1552, 1572, 1837 |
| Fsp4HI | GCNGC | 7 cut(s) | 153, 994, 1039, 1136, 1199, 1234, 1278 |
| FspBI | CTAG | 3 cut(s) | 255, 380, 1244 |
| GlaI | GCGC | 1 cut(s) | 1080 |
| GluI | GCNGC | 7 cut(s) | 153, 994, 1039, 1136, 1199, 1234, 1278 |
| GsuI | CTGGAG | 2 cut(s) | 896, 1103 |
| HaeIII | GGCC | 3 cut(s) | 142, 648, 1859 |
| HapII | CCGG | 3 cut(s) | 716, 1323, 1517 |
| HgaI | GACGC | 1 cut(s) | 1496 |
| HhaI | GCGC | 1 cut(s) | 1081 |
| Hin1II | CATG | 9 cut(s) | 14, 212, 283, 388, 394, 1206, 1358, 1375, 1778 |
| Hin6I | GCGC | 1 cut(s) | 1079 |
| HinP1I | GCGC | 1 cut(s) | 1079 |
| HincII | GTYRAC | 1 cut(s) | 222 |
| HindII | GTYRAC | 1 cut(s) | 222 |
| HindIII | AAGCTT | 3 cut(s) | 809, 941, 2095 |
| HpaII | CCGG | 3 cut(s) | 716, 1323, 1517 |
| HphI | GGTGA | 1 cut(s) | 1936 |
| Hpy166II | GTNNAC | 4 cut(s) | 137, 222, 1391, 1735 |
| Hpy8I | GTNNAC | 4 cut(s) | 137, 222, 1391, 1735 |
| Hpy99I | CGWCG | 1 cut(s) | 112 |
| HpyAV | CCTTC | 9 cut(s) | 52, 432, 497, 506, 795, 927, 1083, 1149, 1589 |
| HpyCH4III | ACNGT | 2 cut(s) | 68, 1252 |
| HpyCH4IV | ACGT | 2 cut(s) | 1228, 1874 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 248, 675, 1066, 1132, 1144, 1204, 1451, 1856 |
| HpyF3I | CTNAG | 9 cut(s) | 449, 530, 696, 708, 726, 827, 1421, 2049, 2075 |
| HpySE526I | ACGT | 2 cut(s) | 1228, 1874 |
| Hsp92II | CATG | 9 cut(s) | 14, 212, 283, 388, 394, 1206, 1358, 1375, 1778 |
| HspAI | GCGC | 1 cut(s) | 1079 |
| Kpn2I | TCCGGA | 1 cut(s) | 715 |
| LmnI | GCTCC | 5 cut(s) | 149, 666, 842, 1348, 1395 |
| Lsp1109I | GCAGC | 7 cut(s) | 164, 980, 1025, 1122, 1185, 1220, 1289 |
| LweI | GCATC | 7 cut(s) | 67, 429, 687, 852, 1213, 1402, 1859 |
| MabI | ACCWGGT | 1 cut(s) | 1155 |
| MaeI | CTAG | 3 cut(s) | 255, 380, 1244 |
| MaeII | ACGT | 2 cut(s) | 1228, 1874 |
| MaeIII | GTNAC | 5 cut(s) | 830, 1447, 1478, 1613, 1715 |
| MfeI | CAATTG | 2 cut(s) | 369, 1168 |
| MflI | RGATCY | 5 cut(s) | 394, 406, 718, 955, 1672 |
| MhlI | GDGCHC | 1 cut(s) | 1393 |
| MlyI | GAGTC | 9 cut(s) | 191, 313, 686, 739, 1061, 1120, 1186, 1947, 2075 |
| MmeI | TCCRAC | 2 cut(s) | 1200, 1789 |
| Mph1103I | ATGCAT | 2 cut(s) | 444, 1628 |
| MroI | TCCGGA | 1 cut(s) | 715 |
| MseI | TTAA | 9 cut(s) | 170, 264, 317, 671, 960, 978, 1337, 1503, 1683 |
| MslI | CAYNNNNRTG | 2 cut(s) | 389, 546 |
| MspCI | CTTAAG | 1 cut(s) | 977 |
| MspI | CCGG | 3 cut(s) | 716, 1323, 1517 |
| MspR9I | CCNGG | 6 cut(s) | 187, 704, 867, 1091, 1157, 1518 |
| MunI | CAATTG | 2 cut(s) | 369, 1168 |
| Mva1269I | GAATGC | 2 cut(s) | 380, 1637 |
| MvaI | CCWGG | 5 cut(s) | 187, 704, 867, 1091, 1157 |
| MvnI | CGCG | 1 cut(s) | 1833 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 248, 675, 1066, 1132, 1144, 1204, 1451, 1856 |
| NciI | CCSGG | 1 cut(s) | 1518 |
| NcoI | CCATGG | 2 cut(s) | 390, 1202 |
| NdeI | CATATG | 1 cut(s) | 343 |
| NlaIII | CATG | 9 cut(s) | 14, 212, 283, 388, 394, 1206, 1358, 1375, 1778 |
| NlaIV | GGNNCC | 3 cut(s) | 396, 714, 1674 |
| NmuCI | GTSAC | 2 cut(s) | 1478, 1715 |
| NruI | TCGCGA | 1 cut(s) | 1833 |
| NsiI | ATGCAT | 2 cut(s) | 444, 1628 |
| NspI | RCATGY | 1 cut(s) | 283 |
| NspV | TTCGAA | 1 cut(s) | 126 |
| PaeI | GCATGC | 1 cut(s) | 283 |
| PaeR7I | CTCGAG | 2 cut(s) | 740, 935 |
| PceI | AGGCCT | 2 cut(s) | 648, 1859 |
| PctI | GAATGC | 2 cut(s) | 380, 1637 |
| PfeI | GAWTC | 5 cut(s) | 205, 292, 799, 982, 1469 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 336 |
| PfoI | TCCNGGA | 1 cut(s) | 1516 |
| PinAI | ACCGGT | 1 cut(s) | 1322 |
| PkrI | GCNGC | 7 cut(s) | 154, 995, 1040, 1137, 1200, 1235, 1279 |
| PleI | GAGTC | 9 cut(s) | 190, 312, 686, 738, 1060, 1119, 1185, 1946, 2074 |
| PmaCI | CACGTG | 1 cut(s) | 1229 |
| PmlI | CACGTG | 1 cut(s) | 1229 |
| PpsI | GAGTC | 9 cut(s) | 190, 312, 686, 738, 1060, 1119, 1185, 1946, 2074 |
| Ppu21I | YACGTR | 1 cut(s) | 1229 |
| PsiI | TTATAA | 1 cut(s) | 1364 |
| Psp6I | CCWGG | 5 cut(s) | 185, 702, 865, 1089, 1155 |
| PspCI | CACGTG | 1 cut(s) | 1229 |
| PspGI | CCWGG | 5 cut(s) | 185, 702, 865, 1089, 1155 |
| PspN4I | GGNNCC | 3 cut(s) | 396, 714, 1674 |
| PstI | CTGCAG | 2 cut(s) | 1279, 1447 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1451 |
| PsuI | RGATCY | 5 cut(s) | 394, 406, 718, 955, 1672 |
| RruI | TCGCGA | 1 cut(s) | 1833 |
| RsaI | GTAC | 4 cut(s) | 136, 766, 887, 1880 |
| RsaNI | GTAC | 4 cut(s) | 135, 765, 886, 1879 |
| RseI | CAYNNNNRTG | 2 cut(s) | 389, 546 |
| SaqAI | TTAA | 9 cut(s) | 170, 264, 317, 671, 960, 978, 1337, 1503, 1683 |
| SatI | GCNGC | 7 cut(s) | 153, 994, 1039, 1136, 1199, 1234, 1278 |
| SchI | GAGTC | 9 cut(s) | 191, 313, 686, 739, 1061, 1120, 1186, 1947, 2075 |
| ScrFI | CCNGG | 6 cut(s) | 187, 704, 867, 1091, 1157, 1518 |
| SduI | GDGCHC | 1 cut(s) | 1393 |
| SexAI | ACCWGGT | 1 cut(s) | 1155 |
| SfaNI | GCATC | 7 cut(s) | 67, 429, 687, 852, 1213, 1402, 1859 |
| SfcI | CTRYAG | 2 cut(s) | 1275, 1443 |
| Sfr274I | CTCGAG | 2 cut(s) | 740, 935 |
| SfuI | TTCGAA | 1 cut(s) | 126 |
| SlaI | CTCGAG | 2 cut(s) | 740, 935 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 389, 546 |
| SpeI | ACTAGT | 1 cut(s) | 254 |
| SphI | GCATGC | 1 cut(s) | 283 |
| SseBI | AGGCCT | 2 cut(s) | 648, 1859 |
| SspI | AATATT | 1 cut(s) | 1886 |
| SspMI | CTAG | 3 cut(s) | 255, 380, 1244 |
| StuI | AGGCCT | 2 cut(s) | 648, 1859 |
| StyD4I | CCNGG | 6 cut(s) | 185, 702, 865, 1089, 1155, 1516 |
| StyI | CCWWGG | 2 cut(s) | 390, 1202 |
| TaaI | ACNGT | 2 cut(s) | 68, 1252 |
| TaiI | ACGT | 2 cut(s) | 1231, 1877 |
| TaqII | GACCGA | 2 cut(s) | 1115, 1173 |
| TatI | WGTACW | 3 cut(s) | 134, 764, 885 |
| TfiI | GAWTC | 5 cut(s) | 205, 292, 799, 982, 1469 |
| Tru1I | TTAA | 9 cut(s) | 170, 264, 317, 671, 960, 978, 1337, 1503, 1683 |
| Tru9I | TTAA | 9 cut(s) | 170, 264, 317, 671, 960, 978, 1337, 1503, 1683 |
| TscAI | CASTG | 3 cut(s) | 548, 1461, 2083 |
| TseFI | GTSAC | 2 cut(s) | 1478, 1715 |
| TseI | GCWGC | 7 cut(s) | 152, 993, 1038, 1135, 1198, 1233, 1277 |
| Tsp45I | GTSAC | 2 cut(s) | 1478, 1715 |
| TspDTI | ATGAA | 6 cut(s) | 197, 777, 909, 1388, 1539, 2004 |
| TspGWI | ACGGA | 1 cut(s) | 1408 |
| TspRI | CASTG | 3 cut(s) | 548, 1461, 2083 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 336 |
| Vha464I | CTTAAG | 1 cut(s) | 977 |
| VneI | GTGCAC | 1 cut(s) | 1389 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 707 |
| XapI | RAATTY | 6 cut(s) | 534, 562, 849, 1009, 1309, 1527 |
| XceI | RCATGY | 1 cut(s) | 283 |
| XhoI | CTCGAG | 2 cut(s) | 740, 935 |
| XspI | CTAG | 3 cut(s) | 255, 380, 1244 |
| Zsp2I | ATGCAT | 2 cut(s) | 444, 1628 |