RESISTANCE protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| TIR | PF01582 | 17 - 192 | 1.1e-54 | TIR domain |
| TIR_2 | PF13676 | 20 - 116 | 3.3e-15 | TIR domain |
| NB-ARC | PF00931 | 212 - 368 | 1.1e-15 | NB-ARC domain |
| WHD_ROQ1 | PF23282 | 443 - 519 | 4.4e-17 | Disease resistance protein Roq1-like, winged-helix domain |
| LRR_14 | PF23598 | 727 - 850 | 1.6e-14 | Leucine-rich repeat region |
| LRR_8 | PF13855 | 747 - 803 | 3.8e-06 | Leucine rich repeat |
| C-JID | PF20160 | 1055 - 1199 | 1.3e-12 | C-JID domain |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 3 cut(s) | 863, 983, 3003 |
| AarI | CACCTGC | 1 cut(s) | 193 |
| Acc16I | TGCGCA | 2 cut(s) | 39, 279 |
| Acc36I | ACCTGC | 1 cut(s) | 193 |
| AccII | CGCG | 2 cut(s) | 543, 1358 |
| AccIII | TCCGGA | 2 cut(s) | 2703, 3139 |
| AciI | CCGC | 8 cut(s) | 88, 117, 127, 1178, 1424, 2596, 3311, 3510 |
| AclI | AACGTT | 1 cut(s) | 403 |
| AclWI | GGATC | 6 cut(s) | 335, 839, 2976, 3388, 3401, 3520 |
| AcsI | RAATTY | 5 cut(s) | 1182, 1727, 2555, 3177, 3652 |
| AcuI | CTGAAG | 4 cut(s) | 1076, 1754, 3267, 3615 |
| AcvI | CACGTG | 1 cut(s) | 2125 |
| AdeI | CACNNNGTG | 1 cut(s) | 3427 |
| AfaI | GTAC | 5 cut(s) | 53, 354, 1594, 3152, 3437 |
| AfeI | AGCGCT | 1 cut(s) | 1194 |
| AfiI | CCNNNNNNNGG | 8 cut(s) | 79, 364, 848, 886, 1152, 1780, 2790, 3451 |
| AflII | CTTAAG | 1 cut(s) | 2456 |
| AflIII | ACRYGT | 1 cut(s) | 349 |
| AjiI | CACGTC | 1 cut(s) | 2773 |
| AjnI | CCWGG | 4 cut(s) | 964, 1570, 1918, 2614 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 924, 956, 2574, 2606 |
| AleI | CACNNNNGTG | 1 cut(s) | 2127 |
| Alw21I | GWGCWC | 3 cut(s) | 423, 1235, 1797 |
| Alw26I | GTCTC | 8 cut(s) | 1461, 1930, 2182, 2378, 2429, 2627, 2685, 3493 |
| Alw44I | GTGCAC | 1 cut(s) | 1793 |
| AlwI | GGATC | 6 cut(s) | 335, 839, 2976, 3388, 3401, 3520 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 2936 |
| Ama87I | CYCGRG | 5 cut(s) | 599, 1756, 2501, 3166, 3483 |
| Aor13HI | TCCGGA | 2 cut(s) | 2703, 3139 |
| Aor51HI | AGCGCT | 1 cut(s) | 1194 |
| AoxI | GGCC | 4 cut(s) | 484, 1759, 1850, 1951 |
| ApaLI | GTGCAC | 1 cut(s) | 1793 |
| ApeKI | GCWGC | 5 cut(s) | 377, 380, 1175, 1999, 2433 |
| ApoI | RAATTY | 5 cut(s) | 1182, 1727, 2555, 3177, 3652 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 2403, 2435 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 630, 1089, 1821 |
| AspA2I | CCTAGG | 1 cut(s) | 1961 |
| AspLEI | GCGC | 5 cut(s) | 40, 280, 1195, 1581, 2859 |
| AspS9I | GGNCC | 6 cut(s) | 889, 962, 1759, 2229, 3459, 3599 |
| AsuC2I | CCSGG | 1 cut(s) | 1598 |
| AsuHPI | GGTGA | 7 cut(s) | 956, 1757, 3202, 3335, 3362, 3466, 3574 |
| AsuII | TTCGAA | 3 cut(s) | 723, 1865, 3682 |
| AvaI | CYCGRG | 5 cut(s) | 599, 1756, 2501, 3166, 3483 |
| AvaII | GGWCC | 5 cut(s) | 889, 962, 2229, 3459, 3599 |
| AvrII | CCTAGG | 1 cut(s) | 1961 |
| BaeGI | GKGCMC | 1 cut(s) | 1797 |
| BamHI | GGATCC | 1 cut(s) | 3393 |
| BbrPI | CACGTG | 1 cut(s) | 2125 |
| BbsI | GAAGAC | 1 cut(s) | 2933 |
| Bbv12I | GWGCWC | 3 cut(s) | 423, 1235, 1797 |
| BbvI | GCAGC | 5 cut(s) | 367, 389, 1162, 2011, 2420 |
| BccI | CCATC | 6 cut(s) | 850, 1885, 2255, 2668, 2816, 3398 |
| BceAI | ACGGC | 1 cut(s) | 3522 |
| BcgI | CGANNNNNNTGC | 6 cut(s) | 1855, 1889, 3495, 3512, 3529, 3546 |
| BciT130I | CCWGG | 4 cut(s) | 966, 1572, 1920, 2616 |
| BclI | TGATCA | 1 cut(s) | 946 |
| BcnI | CCSGG | 1 cut(s) | 1598 |
| BcoDI | GTCTC | 8 cut(s) | 1461, 1930, 2182, 2378, 2429, 2627, 2685, 3493 |
| BfaI | CTAG | 6 cut(s) | 771, 929, 990, 1962, 2891, 3548 |
| BfmI | CTRYAG | 2 cut(s) | 846, 2202 |
| BfoI | RGCGCY | 2 cut(s) | 1196, 2860 |
| BfrI | CTTAAG | 1 cut(s) | 2456 |
| BfuAI | ACCTGC | 1 cut(s) | 193 |
| BglII | AGATCT | 1 cut(s) | 2017 |
| BisI | GCNGC | 6 cut(s) | 117, 378, 381, 1176, 2000, 2434 |
| BlnI | CCTAGG | 1 cut(s) | 1961 |
| BlpI | GCTNAGC | 1 cut(s) | 3268 |
| BlsI | GCNGC | 6 cut(s) | 118, 379, 382, 1177, 2001, 2435 |
| Bme1390I | CCNGG | 5 cut(s) | 966, 1572, 1598, 1920, 2616 |
| Bme18I | GGWCC | 5 cut(s) | 889, 962, 2229, 3459, 3599 |
| BmeT110I | CYCGRG | 5 cut(s) | 599, 1756, 2501, 3166, 3483 |
| BmgBI | CACGTC | 1 cut(s) | 2773 |
| BmgT120I | GGNCC | 6 cut(s) | 889, 962, 1759, 2229, 3459, 3599 |
| BmiI | GGNNCC | 5 cut(s) | 1210, 2231, 2514, 2782, 3395 |
| BmrFI | CCNGG | 5 cut(s) | 966, 1572, 1598, 1920, 2616 |
| BoxI | GACNNNNGTC | 1 cut(s) | 1608 |
| BpiI | GAAGAC | 1 cut(s) | 2933 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 2360, 2392, 3448, 3480 |
| BpmI | CTGGAG | 2 cut(s) | 1916, 2549 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1189 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 3268 |
| Bpu14I | TTCGAA | 3 cut(s) | 723, 1865, 3682 |
| BpuEI | CTTGAG | 3 cut(s) | 407, 535, 1683 |
| BpuMI | CCSGG | 1 cut(s) | 1598 |
| Bsa29I | ATCGAT | 2 cut(s) | 150, 1980 |
| BsaAI | YACGTR | 1 cut(s) | 2125 |
| BsaBI | GATNNNNATC | 5 cut(s) | 999, 1466, 3081, 3108, 3221 |
| BsaI | GGTCTC | 3 cut(s) | 2182, 2378, 2685 |
| BsaJI | CCNNGG | 7 cut(s) | 73, 1596, 1775, 1961, 2615, 2822, 3397 |
| BsaWI | WCCGGW | 3 cut(s) | 2703, 3139, 3641 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 2058, 2088, 2685, 2715, 2862, 2892 |
| Bsc4I | CCNNNNNNNGG | 8 cut(s) | 79, 364, 848, 886, 1152, 1780, 2790, 3451 |
| Bse1I | ACTGG | 2 cut(s) | 102, 2900 |
| Bse3DI | GCAATG | 3 cut(s) | 1795, 2117, 3535 |
| Bse8I | GATNNNNATC | 5 cut(s) | 999, 1466, 3081, 3108, 3221 |
| BseAI | TCCGGA | 2 cut(s) | 2703, 3139 |
| BseBI | CCWGG | 4 cut(s) | 966, 1572, 1920, 2616 |
| BseCI | ATCGAT | 2 cut(s) | 150, 1980 |
| BseDI | CCNNGG | 7 cut(s) | 73, 1596, 1775, 1961, 2615, 2822, 3397 |
| BseJI | GATNNNNATC | 5 cut(s) | 999, 1466, 3081, 3108, 3221 |
| BseLI | CCNNNNNNNGG | 8 cut(s) | 79, 364, 848, 886, 1152, 1780, 2790, 3451 |
| BseMI | GCAATG | 3 cut(s) | 1795, 2117, 3535 |
| BseNI | ACTGG | 2 cut(s) | 102, 2900 |
| BseRI | GAGGAG | 2 cut(s) | 183, 1686 |
| BseSI | GKGCMC | 1 cut(s) | 1797 |
| BseXI | GCAGC | 5 cut(s) | 367, 389, 1162, 2011, 2420 |
| BseYI | CCCAGC | 1 cut(s) | 461 |
| BsgI | GTGCAG | 2 cut(s) | 2695, 2934 |
| Bsh1236I | CGCG | 2 cut(s) | 543, 1358 |
| Bsh1285I | CGRYCG | 1 cut(s) | 3526 |
| BshFI | GGCC | 4 cut(s) | 486, 1761, 1852, 1953 |
| BshVI | ATCGAT | 2 cut(s) | 150, 1980 |
| BsiEI | CGRYCG | 1 cut(s) | 3526 |
| BsiHKAI | GWGCWC | 3 cut(s) | 423, 1235, 1797 |
| BsiHKCI | CYCGRG | 5 cut(s) | 599, 1756, 2501, 3166, 3483 |
| BsiSI | CCGG | 4 cut(s) | 1598, 2704, 3140, 3642 |
| BslFI | GGGAC | 4 cut(s) | 1648, 2215, 2350, 2624 |
| BslI | CCNNNNNNNGG | 8 cut(s) | 79, 364, 848, 886, 1152, 1780, 2790, 3451 |
| BsmAI | GTCTC | 8 cut(s) | 1461, 1930, 2182, 2378, 2429, 2627, 2685, 3493 |
| BsmFI | GGGAC | 4 cut(s) | 1648, 2215, 2350, 2624 |
| BsmI | GAATGC | 3 cut(s) | 296, 551, 3031 |
| BsnI | GGCC | 4 cut(s) | 486, 1761, 1852, 1953 |
| Bso31I | GGTCTC | 3 cut(s) | 2182, 2378, 2685 |
| BsoBI | CYCGRG | 5 cut(s) | 599, 1756, 2501, 3166, 3483 |
| Bsp119I | TTCGAA | 3 cut(s) | 723, 1865, 3682 |
| Bsp1286I | GDGCHC | 3 cut(s) | 423, 1235, 1797 |
| Bsp13I | TCCGGA | 2 cut(s) | 2703, 3139 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 3268 |
| Bsp68I | TCGCGA | 1 cut(s) | 543 |
| BspACI | CCGC | 8 cut(s) | 88, 117, 127, 1178, 1424, 2596, 3311, 3510 |
| BspANI | GGCC | 4 cut(s) | 486, 1761, 1852, 1953 |
| BspDI | ATCGAT | 2 cut(s) | 150, 1980 |
| BspEI | TCCGGA | 2 cut(s) | 2703, 3139 |
| BspFNI | CGCG | 2 cut(s) | 543, 1358 |
| BspHI | TCATGA | 1 cut(s) | 1078 |
| BspLI | GGNNCC | 5 cut(s) | 1210, 2231, 2514, 2782, 3395 |
| BspMI | ACCTGC | 1 cut(s) | 193 |
| BspPI | GGATC | 6 cut(s) | 335, 839, 2976, 3388, 3401, 3520 |
| BspQI | GCTCTTC | 1 cut(s) | 1103 |
| BspT104I | TTCGAA | 3 cut(s) | 723, 1865, 3682 |
| BspTI | CTTAAG | 1 cut(s) | 2456 |
| BspTNI | GGTCTC | 3 cut(s) | 2182, 2378, 2685 |
| BsrDI | GCAATG | 3 cut(s) | 1795, 2117, 3535 |
| BsrI | ACTGG | 2 cut(s) | 102, 2900 |
| BssECI | CCNNGG | 7 cut(s) | 73, 1596, 1775, 1961, 2615, 2822, 3397 |
| BssT1I | CCWWGG | 3 cut(s) | 1775, 1961, 3397 |
| Bst2UI | CCWGG | 4 cut(s) | 966, 1572, 1920, 2616 |
| Bst4CI | ACNGT | 6 cut(s) | 646, 711, 2294, 2638, 2932, 3690 |
| Bst6I | CTCTTC | 2 cut(s) | 1103, 2968 |
| BstAFI | CTTAAG | 1 cut(s) | 2456 |
| BstAPI | GCANNNNNTGC | 3 cut(s) | 1024, 3077, 3104 |
| BstBAI | YACGTR | 1 cut(s) | 2125 |
| BstBI | TTCGAA | 3 cut(s) | 723, 1865, 3682 |
| BstC8I | GCNNGC | 7 cut(s) | 42, 1850, 2855, 2918, 3385, 3508, 3535 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 3449 |
| BstFNI | CGCG | 2 cut(s) | 543, 1358 |
| BstH2I | RGCGCY | 2 cut(s) | 1196, 2860 |
| BstHHI | GCGC | 5 cut(s) | 40, 280, 1195, 1581, 2859 |
| BstMAI | GTCTC | 8 cut(s) | 1461, 1930, 2182, 2378, 2429, 2627, 2685, 3493 |
| BstMCI | CGRYCG | 1 cut(s) | 3526 |
| BstMWI | GCNNNNNNNGC | 9 cut(s) | 483, 1024, 1576, 1585, 1915, 2745, 3077, 3104, 3534 |
| BstNI | CCWGG | 4 cut(s) | 966, 1572, 1920, 2616 |
| BstNSI | RCATGY | 5 cut(s) | 44, 353, 1413, 3311, 3632 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 1608 |
| BstSCI | CCNGG | 5 cut(s) | 964, 1570, 1596, 1918, 2614 |
| BstSFI | CTRYAG | 2 cut(s) | 846, 2202 |
| BstSLI | GKGCMC | 1 cut(s) | 1797 |
| BstUI | CGCG | 2 cut(s) | 543, 1358 |
| BstV1I | GCAGC | 5 cut(s) | 367, 389, 1162, 2011, 2420 |
| BstV2I | GAAGAC | 1 cut(s) | 2933 |
| BstX2I | RGATCY | 3 cut(s) | 340, 2017, 3393 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 3404 |
| BstYI | RGATCY | 3 cut(s) | 340, 2017, 3393 |
| Bsu15I | ATCGAT | 2 cut(s) | 150, 1980 |
| BsuRI | GGCC | 4 cut(s) | 486, 1761, 1852, 1953 |
| BsuTUI | ATCGAT | 2 cut(s) | 150, 1980 |
| BtrI | CACGTC | 1 cut(s) | 2773 |
| BtsIMutI | CAGTG | 3 cut(s) | 642, 1902, 2937 |
| BtuMI | TCGCGA | 1 cut(s) | 543 |
| BveI | ACCTGC | 1 cut(s) | 193 |
| Cac8I | GCNNGC | 7 cut(s) | 42, 1850, 2855, 2918, 3385, 3508, 3535 |
| CaiI | CAGNNNCTG | 1 cut(s) | 2936 |
| CciI | TCATGA | 1 cut(s) | 1078 |
| CfoI | GCGC | 5 cut(s) | 40, 280, 1195, 1581, 2859 |
| Cfr13I | GGNCC | 6 cut(s) | 889, 962, 1759, 2229, 3459, 3599 |
| ClaI | ATCGAT | 2 cut(s) | 150, 1980 |
| Csp6I | GTAC | 5 cut(s) | 52, 353, 1593, 3151, 3436 |
| CviQI | GTAC | 5 cut(s) | 52, 353, 1593, 3151, 3436 |
| DraI | TTTAAA | 2 cut(s) | 561, 2095 |
| DraIII | CACNNNGTG | 1 cut(s) | 3427 |
| Eam1104I | CTCTTC | 2 cut(s) | 1103, 2968 |
| EarI | CTCTTC | 2 cut(s) | 1103, 2968 |
| EciI | GGCGGA | 2 cut(s) | 2611, 3525 |
| Eco130I | CCWWGG | 3 cut(s) | 1775, 1961, 3397 |
| Eco31I | GGTCTC | 3 cut(s) | 2182, 2378, 2685 |
| Eco32I | GATATC | 3 cut(s) | 1429, 1464, 3223 |
| Eco47I | GGWCC | 5 cut(s) | 889, 962, 2229, 3459, 3599 |
| Eco47III | AGCGCT | 1 cut(s) | 1194 |
| Eco57I | CTGAAG | 4 cut(s) | 1076, 1754, 3267, 3615 |
| Eco72I | CACGTG | 1 cut(s) | 2125 |
| Eco88I | CYCGRG | 5 cut(s) | 599, 1756, 2501, 3166, 3483 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 3449 |
| EcoO109I | RGGNCCY | 1 cut(s) | 889 |
| EcoRI | GAATTC | 2 cut(s) | 1182, 3652 |
| EcoRII | CCWGG | 4 cut(s) | 964, 1570, 1918, 2614 |
| EcoRV | GATATC | 3 cut(s) | 1429, 1464, 3223 |
| EcoT14I | CCWWGG | 3 cut(s) | 1775, 1961, 3397 |
| EcoT22I | ATGCAT | 5 cut(s) | 617, 1002, 1321, 1411, 1515 |
| ErhI | CCWWGG | 3 cut(s) | 1775, 1961, 3397 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 1673, 1705, 2965, 2997 |
| FaqI | GGGAC | 4 cut(s) | 1648, 2215, 2350, 2624 |
| FauI | CCCGC | 3 cut(s) | 95, 1171, 3304 |
| FbaI | TGATCA | 1 cut(s) | 946 |
| Fnu4HI | GCNGC | 6 cut(s) | 117, 378, 381, 1176, 2000, 2434 |
| Fsp4HI | GCNGC | 6 cut(s) | 117, 378, 381, 1176, 2000, 2434 |
| FspBI | CTAG | 6 cut(s) | 771, 929, 990, 1962, 2891, 3548 |
| FspI | TGCGCA | 2 cut(s) | 39, 279 |
| GlaI | GCGC | 5 cut(s) | 39, 279, 1194, 1580, 2858 |
| GluI | GCNGC | 6 cut(s) | 117, 378, 381, 1176, 2000, 2434 |
| GsaI | CCCAGC | 1 cut(s) | 465 |
| GsuI | CTGGAG | 2 cut(s) | 1916, 2549 |
| HaeII | RGCGCY | 2 cut(s) | 1196, 2860 |
| HaeIII | GGCC | 4 cut(s) | 486, 1761, 1852, 1953 |
| HapII | CCGG | 4 cut(s) | 1598, 2704, 3140, 3642 |
| HhaI | GCGC | 5 cut(s) | 40, 280, 1195, 1581, 2859 |
| Hin6I | GCGC | 5 cut(s) | 38, 278, 1193, 1579, 2857 |
| HinP1I | GCGC | 5 cut(s) | 38, 278, 1193, 1579, 2857 |
| HincII | GTYRAC | 2 cut(s) | 2943, 3289 |
| HindII | GTYRAC | 2 cut(s) | 2943, 3289 |
| HindIII | AAGCTT | 3 cut(s) | 726, 2108, 2626 |
| HpaI | GTTAAC | 1 cut(s) | 2943 |
| HpaII | CCGG | 4 cut(s) | 1598, 2704, 3140, 3642 |
| HphI | GGTGA | 7 cut(s) | 956, 1757, 3202, 3335, 3362, 3466, 3574 |
| Hpy166II | GTNNAC | 8 cut(s) | 1485, 1553, 1593, 1795, 2035, 2943, 3289, 3462 |
| Hpy8I | GTNNAC | 8 cut(s) | 1485, 1553, 1593, 1795, 2035, 2943, 3289, 3462 |
| Hpy99I | CGWCG | 2 cut(s) | 1224, 2668 |
| HpyCH4III | ACNGT | 6 cut(s) | 646, 711, 2294, 2638, 2932, 3690 |
| HpyCH4IV | ACGT | 4 cut(s) | 403, 2124, 2586, 2772 |
| HpyF10VI | GCNNNNNNNGC | 9 cut(s) | 483, 1024, 1576, 1585, 1915, 2745, 3077, 3104, 3534 |
| HpySE526I | ACGT | 4 cut(s) | 403, 2124, 2586, 2772 |
| HspAI | GCGC | 5 cut(s) | 38, 278, 1193, 1579, 2857 |
| Kpn2I | TCCGGA | 2 cut(s) | 2703, 3139 |
| Ksp22I | TGATCA | 1 cut(s) | 946 |
| KspAI | GTTAAC | 1 cut(s) | 2943 |
| LguI | GCTCTTC | 1 cut(s) | 1103 |
| LmnI | GCTCC | 5 cut(s) | 1034, 1133, 2512, 2793, 2883 |
| Lsp1109I | GCAGC | 5 cut(s) | 367, 389, 1162, 2011, 2420 |
| MaeI | CTAG | 6 cut(s) | 771, 929, 990, 1962, 2891, 3548 |
| MaeII | ACGT | 4 cut(s) | 403, 2124, 2586, 2772 |
| MaeIII | GTNAC | 3 cut(s) | 1499, 2610, 2909 |
| MfeI | CAATTG | 2 cut(s) | 1542, 2364 |
| MflI | RGATCY | 3 cut(s) | 340, 2017, 3393 |
| MhlI | GDGCHC | 3 cut(s) | 423, 1235, 1797 |
| MlyI | GAGTC | 3 cut(s) | 611, 1687, 3495 |
| MmeI | TCCRAC | 3 cut(s) | 553, 1599, 2490 |
| Mph1103I | ATGCAT | 5 cut(s) | 617, 1002, 1321, 1411, 1515 |
| MroI | TCCGGA | 2 cut(s) | 2703, 3139 |
| MroXI | GAANNNNTTC | 3 cut(s) | 630, 1089, 1821 |
| MslI | CAYNNNNRTG | 5 cut(s) | 111, 610, 1107, 1451, 2127 |
| MspA1I | CMGCKG | 3 cut(s) | 380, 1848, 2002 |
| MspCI | CTTAAG | 1 cut(s) | 2456 |
| MspI | CCGG | 4 cut(s) | 1598, 2704, 3140, 3642 |
| MspR9I | CCNGG | 5 cut(s) | 966, 1572, 1598, 1920, 2616 |
| MunI | CAATTG | 2 cut(s) | 1542, 2364 |
| Mva1269I | GAATGC | 3 cut(s) | 296, 551, 3031 |
| MvaI | CCWGG | 4 cut(s) | 966, 1572, 1920, 2616 |
| MvnI | CGCG | 2 cut(s) | 543, 1358 |
| MwoI | GCNNNNNNNGC | 9 cut(s) | 483, 1024, 1576, 1585, 1915, 2745, 3077, 3104, 3534 |
| NciI | CCSGG | 1 cut(s) | 1598 |
| NlaIV | GGNNCC | 5 cut(s) | 1210, 2231, 2514, 2782, 3395 |
| NmeAIII | GCCGAG | 1 cut(s) | 2803 |
| NmuCI | GTSAC | 1 cut(s) | 2909 |
| NruI | TCGCGA | 1 cut(s) | 543 |
| NsbI | TGCGCA | 2 cut(s) | 39, 279 |
| NsiI | ATGCAT | 5 cut(s) | 617, 1002, 1321, 1411, 1515 |
| NspI | RCATGY | 5 cut(s) | 44, 353, 1413, 3311, 3632 |
| NspV | TTCGAA | 3 cut(s) | 723, 1865, 3682 |
| OliI | CACNNNNGTG | 1 cut(s) | 2127 |
| PaeI | GCATGC | 1 cut(s) | 44 |
| PaeR7I | CTCGAG | 2 cut(s) | 599, 3483 |
| PagI | TCATGA | 1 cut(s) | 1078 |
| PaqCI | CACCTGC | 1 cut(s) | 193 |
| PciI | ACATGT | 1 cut(s) | 349 |
| PciSI | GCTCTTC | 1 cut(s) | 1103 |
| PctI | GAATGC | 3 cut(s) | 296, 551, 3031 |
| PdmI | GAANNNNTTC | 3 cut(s) | 630, 1089, 1821 |
| PflFI | GACNNNGTC | 1 cut(s) | 2932 |
| PkrI | GCNGC | 6 cut(s) | 118, 379, 382, 1177, 2001, 2435 |
| Ple19I | CGATCG | 1 cut(s) | 3526 |
| PleI | GAGTC | 3 cut(s) | 610, 1687, 3494 |
| PmaCI | CACGTG | 1 cut(s) | 2125 |
| PmlI | CACGTG | 1 cut(s) | 2125 |
| PpsI | GAGTC | 3 cut(s) | 610, 1687, 3494 |
| Ppu21I | YACGTR | 1 cut(s) | 2125 |
| PpuMI | RGGWCCY | 1 cut(s) | 889 |
| PscI | ACATGT | 1 cut(s) | 349 |
| PshAI | GACNNNNGTC | 1 cut(s) | 1608 |
| PsiI | TTATAA | 3 cut(s) | 863, 983, 3003 |
| Psp1406I | AACGTT | 1 cut(s) | 403 |
| Psp5II | RGGWCCY | 1 cut(s) | 889 |
| Psp6I | CCWGG | 4 cut(s) | 964, 1570, 1918, 2614 |
| PspCI | CACGTG | 1 cut(s) | 2125 |
| PspFI | CCCAGC | 1 cut(s) | 461 |
| PspGI | CCWGG | 4 cut(s) | 964, 1570, 1918, 2614 |
| PspN4I | GGNNCC | 5 cut(s) | 1210, 2231, 2514, 2782, 3395 |
| PspPI | GGNCC | 6 cut(s) | 889, 962, 1759, 2229, 3459, 3599 |
| PspPPI | RGGWCCY | 1 cut(s) | 889 |
| PspXI | VCTCGAGB | 2 cut(s) | 599, 3483 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 615, 647 |
| PstNI | CAGNNNCTG | 1 cut(s) | 2936 |
| PsuI | RGATCY | 3 cut(s) | 340, 2017, 3393 |
| PsyI | GACNNNGTC | 1 cut(s) | 2932 |
| PvuI | CGATCG | 1 cut(s) | 3526 |
| PvuII | CAGCTG | 3 cut(s) | 380, 1848, 2002 |
| RruI | TCGCGA | 1 cut(s) | 543 |
| RsaI | GTAC | 5 cut(s) | 53, 354, 1594, 3152, 3437 |
| RsaNI | GTAC | 5 cut(s) | 52, 353, 1593, 3151, 3436 |
| RseI | CAYNNNNRTG | 5 cut(s) | 111, 610, 1107, 1451, 2127 |
| SapI | GCTCTTC | 1 cut(s) | 1103 |
| SatI | GCNGC | 6 cut(s) | 117, 378, 381, 1176, 2000, 2434 |
| Sau96I | GGNCC | 6 cut(s) | 889, 962, 1759, 2229, 3459, 3599 |
| SchI | GAGTC | 3 cut(s) | 611, 1687, 3495 |
| ScrFI | CCNGG | 5 cut(s) | 966, 1572, 1598, 1920, 2616 |
| SduI | GDGCHC | 3 cut(s) | 423, 1235, 1797 |
| SfcI | CTRYAG | 2 cut(s) | 846, 2202 |
| Sfr274I | CTCGAG | 2 cut(s) | 599, 3483 |
| SfuI | TTCGAA | 3 cut(s) | 723, 1865, 3682 |
| SinI | GGWCC | 5 cut(s) | 889, 962, 2229, 3459, 3599 |
| SlaI | CTCGAG | 2 cut(s) | 599, 3483 |
| SmiMI | CAYNNNNRTG | 5 cut(s) | 111, 610, 1107, 1451, 2127 |
| SmlI | CTYRAG | 6 cut(s) | 422, 550, 599, 1698, 2456, 3483 |
| SmoI | CTYRAG | 6 cut(s) | 422, 550, 599, 1698, 2456, 3483 |
| SphI | GCATGC | 1 cut(s) | 44 |
| SsiI | CCGC | 8 cut(s) | 88, 117, 127, 1178, 1424, 2596, 3311, 3510 |
| SspI | AATATT | 1 cut(s) | 1871 |
| SspMI | CTAG | 6 cut(s) | 771, 929, 990, 1962, 2891, 3548 |
| StyD4I | CCNGG | 5 cut(s) | 964, 1570, 1596, 1918, 2614 |
| StyI | CCWWGG | 3 cut(s) | 1775, 1961, 3397 |
| TaaI | ACNGT | 6 cut(s) | 646, 711, 2294, 2638, 2932, 3690 |
| TaiI | ACGT | 4 cut(s) | 406, 2127, 2589, 2775 |
| TaqII | GACCGA | 2 cut(s) | 2656, 3621 |
| TauI | GCSGC | 1 cut(s) | 119 |
| TscAI | CASTG | 3 cut(s) | 649, 1909, 2937 |
| TseFI | GTSAC | 1 cut(s) | 2909 |
| TseI | GCWGC | 5 cut(s) | 377, 380, 1175, 1999, 2433 |
| Tsp45I | GTSAC | 1 cut(s) | 2909 |
| TspGWI | ACGGA | 2 cut(s) | 1082, 2974 |
| TspRI | CASTG | 3 cut(s) | 649, 1909, 2937 |
| Tth111I | GACNNNGTC | 1 cut(s) | 2932 |
| Vha464I | CTTAAG | 1 cut(s) | 2456 |
| VneI | GTGCAC | 1 cut(s) | 1793 |
| VpaK11BI | GGWCC | 5 cut(s) | 889, 962, 2229, 3459, 3599 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 3449 |
| XapI | RAATTY | 5 cut(s) | 1182, 1727, 2555, 3177, 3652 |
| XbaI | TCTAGA | 1 cut(s) | 2890 |
| XceI | RCATGY | 5 cut(s) | 44, 353, 1413, 3311, 3632 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 2295 |
| XhoI | CTCGAG | 2 cut(s) | 599, 3483 |
| XmaJI | CCTAGG | 1 cut(s) | 1961 |
| XmnI | GAANNNNTTC | 3 cut(s) | 630, 1089, 1821 |
| XspI | CTAG | 6 cut(s) | 771, 929, 990, 1962, 2891, 3548 |
| Zsp2I | ATGCAT | 5 cut(s) | 617, 1002, 1321, 1411, 1515 |