Disease resistance protein (TIR-NBS-LRR class)
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| TIR | PF01582 | 13 - 189 | 1.5e-58 | TIR domain |
| TIR_2 | PF13676 | 16 - 120 | 1.2e-15 | TIR domain |
| NB-ARC | PF00931 | 208 - 363 | 4.7e-13 | NB-ARC domain |
| WHD_ROQ1 | PF23282 | 439 - 512 | 1.4e-17 | Disease resistance protein Roq1-like, winged-helix domain |
| LRR_14 | PF23598 | 748 - 823 | 9.6e-10 | Leucine-rich repeat region |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 971, 2412 |
| Acc16I | TGCGCA | 2 cut(s) | 27, 267 |
| AccBSI | CCGCTC | 1 cut(s) | 1231 |
| AciI | CCGC | 8 cut(s) | 76, 105, 1119, 1166, 1231, 1412, 1471, 2232 |
| AclI | AACGTT | 1 cut(s) | 391 |
| AclWI | GGATC | 4 cut(s) | 323, 827, 847, 1791 |
| AcsI | RAATTY | 5 cut(s) | 1170, 1700, 2049, 2358, 2525 |
| AcuI | CTGAAG | 3 cut(s) | 1064, 1763, 2480 |
| AfaI | GTAC | 2 cut(s) | 342, 871 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 67, 352, 836, 858, 874 |
| AflII | CTTAAG | 1 cut(s) | 2426 |
| AflIII | ACRYGT | 1 cut(s) | 337 |
| AjnI | CCWGG | 2 cut(s) | 1543, 1891 |
| AjuI | GAANNNNNNNTTGG | 6 cut(s) | 912, 944, 2211, 2243, 2544, 2576 |
| Alw21I | GWGCWC | 3 cut(s) | 411, 1223, 1770 |
| Alw26I | GTCTC | 2 cut(s) | 2348, 2399 |
| Alw44I | GTGCAC | 1 cut(s) | 1766 |
| AlwI | GGATC | 4 cut(s) | 323, 827, 847, 1791 |
| Ama87I | CYCGRG | 1 cut(s) | 587 |
| AoxI | GGCC | 3 cut(s) | 174, 1823, 1924 |
| ApaLI | GTGCAC | 1 cut(s) | 1766 |
| ApeKI | GCWGC | 6 cut(s) | 365, 368, 1163, 1758, 1969, 2152 |
| ApoI | RAATTY | 5 cut(s) | 1170, 1700, 2049, 2358, 2525 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 2373, 2405 |
| Asp700I | GAANNNNTTC | 7 cut(s) | 618, 786, 1077, 1617, 1794, 2070, 2223 |
| AspA2I | CCTAGG | 1 cut(s) | 1931 |
| AspLEI | GCGC | 4 cut(s) | 28, 268, 576, 1554 |
| AspS9I | GGNCC | 5 cut(s) | 175, 877, 950, 1566, 2199 |
| AsuC2I | CCSGG | 2 cut(s) | 954, 1571 |
| AsuHPI | GGTGA | 2 cut(s) | 944, 1730 |
| AsuII | TTCGAA | 2 cut(s) | 711, 2460 |
| AvaI | CYCGRG | 1 cut(s) | 587 |
| AvaII | GGWCC | 4 cut(s) | 877, 950, 1566, 2199 |
| AvrII | CCTAGG | 1 cut(s) | 1931 |
| BaeGI | GKGCMC | 1 cut(s) | 1770 |
| BbsI | GAAGAC | 1 cut(s) | 2184 |
| Bbv12I | GWGCWC | 3 cut(s) | 411, 1223, 1770 |
| BbvI | GCAGC | 6 cut(s) | 355, 377, 1150, 1745, 1981, 2139 |
| BccI | CCATC | 3 cut(s) | 340, 838, 1858 |
| BciT130I | CCWGG | 2 cut(s) | 1545, 1893 |
| BciVI | GTATCC | 1 cut(s) | 1727 |
| BclI | TGATCA | 1 cut(s) | 934 |
| BcnI | CCSGG | 2 cut(s) | 954, 1571 |
| BcoDI | GTCTC | 2 cut(s) | 2348, 2399 |
| BfaI | CTAG | 5 cut(s) | 446, 917, 978, 1932, 2454 |
| BfmI | CTRYAG | 2 cut(s) | 834, 2153 |
| BfrI | CTTAAG | 1 cut(s) | 2426 |
| BfuI | GTATCC | 1 cut(s) | 1727 |
| BglII | AGATCT | 2 cut(s) | 1987, 2475 |
| BisI | GCNGC | 7 cut(s) | 105, 366, 369, 1164, 1759, 1970, 2153 |
| BlnI | CCTAGG | 1 cut(s) | 1931 |
| BlsI | GCNGC | 7 cut(s) | 106, 367, 370, 1165, 1760, 1971, 2154 |
| Bme1390I | CCNGG | 4 cut(s) | 954, 1545, 1571, 1893 |
| Bme18I | GGWCC | 4 cut(s) | 877, 950, 1566, 2199 |
| BmeT110I | CYCGRG | 1 cut(s) | 587 |
| BmgT120I | GGNCC | 5 cut(s) | 175, 877, 950, 1566, 2199 |
| BmiI | GGNNCC | 6 cut(s) | 1198, 1568, 2200, 2201, 2484, 2521 |
| BmrFI | CCNGG | 4 cut(s) | 954, 1545, 1571, 1893 |
| BpiI | GAAGAC | 1 cut(s) | 2184 |
| BplI | GAGNNNNNCTC | 6 cut(s) | 2330, 2362, 2422, 2454, 2525, 2557 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1177 |
| Bpu14I | TTCGAA | 2 cut(s) | 711, 2460 |
| BpuEI | CTTGAG | 3 cut(s) | 395, 523, 1656 |
| BpuMI | CCSGG | 2 cut(s) | 954, 1571 |
| Bsa29I | ATCGAT | 1 cut(s) | 1950 |
| BsaBI | GATNNNNATC | 2 cut(s) | 987, 1454 |
| BsaJI | CCNNGG | 4 cut(s) | 61, 1569, 1931, 2203 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1353, 1383 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 67, 352, 836, 858, 874 |
| Bse118I | RCCGGY | 2 cut(s) | 172, 677 |
| Bse1I | ACTGG | 1 cut(s) | 90 |
| Bse8I | GATNNNNATC | 2 cut(s) | 987, 1454 |
| BseBI | CCWGG | 2 cut(s) | 1545, 1893 |
| BseCI | ATCGAT | 1 cut(s) | 1950 |
| BseDI | CCNNGG | 4 cut(s) | 61, 1569, 1931, 2203 |
| BseGI | GGATG | 8 cut(s) | 437, 576, 811, 1399, 1494, 1924, 2098, 2453 |
| BseJI | GATNNNNATC | 2 cut(s) | 987, 1454 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 67, 352, 836, 858, 874 |
| BseMII | CTCAG | 8 cut(s) | 1095, 1658, 1831, 1857, 1869, 1956, 1969, 2463 |
| BseNI | ACTGG | 1 cut(s) | 90 |
| BseRI | GAGGAG | 3 cut(s) | 9, 171, 1659 |
| BseSI | GKGCMC | 1 cut(s) | 1770 |
| BseXI | GCAGC | 6 cut(s) | 355, 377, 1150, 1745, 1981, 2139 |
| BseYI | CCCAGC | 1 cut(s) | 1728 |
| BsgI | GTGCAG | 1 cut(s) | 134 |
| Bsh1285I | CGRYCG | 1 cut(s) | 2100 |
| BshFI | GGCC | 3 cut(s) | 176, 1825, 1926 |
| BshVI | ATCGAT | 1 cut(s) | 1950 |
| BsiEI | CGRYCG | 1 cut(s) | 2100 |
| BsiHKAI | GWGCWC | 3 cut(s) | 411, 1223, 1770 |
| BsiHKCI | CYCGRG | 1 cut(s) | 587 |
| BsiSI | CCGG | 4 cut(s) | 173, 678, 953, 1571 |
| BsiWI | CGTACG | 1 cut(s) | 869 |
| BslFI | GGGAC | 4 cut(s) | 309, 1621, 2185, 2320 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 67, 352, 836, 858, 874 |
| BsmAI | GTCTC | 2 cut(s) | 2348, 2399 |
| BsmFI | GGGAC | 4 cut(s) | 309, 1621, 2185, 2320 |
| BsmI | GAATGC | 2 cut(s) | 284, 539 |
| BsnI | GGCC | 3 cut(s) | 176, 1825, 1926 |
| BsoBI | CYCGRG | 1 cut(s) | 587 |
| Bsp119I | TTCGAA | 2 cut(s) | 711, 2460 |
| Bsp1286I | GDGCHC | 3 cut(s) | 411, 1223, 1770 |
| Bsp143I | GATC | 9 cut(s) | 328, 819, 839, 934, 1723, 1783, 1951, 1987, 2475 |
| Bsp19I | CCATGG | 1 cut(s) | 2203 |
| BspACI | CCGC | 8 cut(s) | 76, 105, 1119, 1166, 1231, 1412, 1471, 2232 |
| BspANI | GGCC | 3 cut(s) | 176, 1825, 1926 |
| BspCNI | CTCAG | 8 cut(s) | 1096, 1657, 1830, 1858, 1870, 1957, 1968, 2464 |
| BspDI | ATCGAT | 1 cut(s) | 1950 |
| BspHI | TCATGA | 1 cut(s) | 1066 |
| BspLI | GGNNCC | 6 cut(s) | 1198, 1568, 2200, 2201, 2484, 2521 |
| BspMAI | CTGCAG | 1 cut(s) | 2157 |
| BspPI | GGATC | 4 cut(s) | 323, 827, 847, 1791 |
| BspQI | GCTCTTC | 1 cut(s) | 1091 |
| BspT104I | TTCGAA | 2 cut(s) | 711, 2460 |
| BspTI | CTTAAG | 1 cut(s) | 2426 |
| BsrBI | CCGCTC | 1 cut(s) | 1231 |
| BsrFI | RCCGGY | 2 cut(s) | 172, 677 |
| BsrI | ACTGG | 1 cut(s) | 90 |
| BssAI | RCCGGY | 2 cut(s) | 172, 677 |
| BssECI | CCNNGG | 4 cut(s) | 61, 1569, 1931, 2203 |
| BssMI | GATC | 9 cut(s) | 328, 819, 839, 934, 1723, 1783, 1951, 1987, 2475 |
| BssT1I | CCWWGG | 2 cut(s) | 1931, 2203 |
| Bst2UI | CCWGG | 2 cut(s) | 1545, 1893 |
| Bst4CI | ACNGT | 3 cut(s) | 634, 770, 1150 |
| Bst6I | CTCTTC | 1 cut(s) | 1091 |
| BstAFI | CTTAAG | 1 cut(s) | 2426 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1012 |
| BstBI | TTCGAA | 2 cut(s) | 711, 2460 |
| BstC8I | GCNNGC | 4 cut(s) | 30, 1823, 1827, 1928 |
| BstDSI | CCRYGG | 1 cut(s) | 2203 |
| BstF5I | GGATG | 8 cut(s) | 437, 576, 811, 1399, 1494, 1924, 2098, 2453 |
| BstHHI | GCGC | 4 cut(s) | 28, 268, 576, 1554 |
| BstKTI | GATC | 9 cut(s) | 331, 822, 842, 937, 1726, 1786, 1954, 1990, 2478 |
| BstMAI | GTCTC | 2 cut(s) | 2348, 2399 |
| BstMBI | GATC | 9 cut(s) | 328, 819, 839, 934, 1723, 1783, 1951, 1987, 2475 |
| BstMCI | CGRYCG | 1 cut(s) | 2100 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 580, 1012, 1549, 1558, 1888 |
| BstNI | CCWGG | 2 cut(s) | 1545, 1893 |
| BstNSI | RCATGY | 4 cut(s) | 32, 341, 1350, 1401 |
| BstSCI | CCNGG | 4 cut(s) | 952, 1543, 1569, 1891 |
| BstSFI | CTRYAG | 2 cut(s) | 834, 2153 |
| BstSLI | GKGCMC | 1 cut(s) | 1770 |
| BstV1I | GCAGC | 6 cut(s) | 355, 377, 1150, 1745, 1981, 2139 |
| BstV2I | GAAGAC | 1 cut(s) | 2184 |
| BstX2I | RGATCY | 4 cut(s) | 328, 1783, 1987, 2475 |
| BstYI | RGATCY | 4 cut(s) | 328, 1783, 1987, 2475 |
| Bsu15I | ATCGAT | 1 cut(s) | 1950 |
| BsuI | GTATCC | 1 cut(s) | 1727 |
| BsuRI | GGCC | 3 cut(s) | 176, 1825, 1926 |
| BsuTUI | ATCGAT | 1 cut(s) | 1950 |
| BtgI | CCRYGG | 1 cut(s) | 2203 |
| BtgZI | GCGATG | 1 cut(s) | 1327 |
| BtsCI | GGATG | 8 cut(s) | 437, 576, 811, 1399, 1494, 1924, 2098, 2453 |
| BtsIMutI | CAGTG | 1 cut(s) | 630 |
| Cac8I | GCNNGC | 4 cut(s) | 30, 1823, 1827, 1928 |
| CciI | TCATGA | 1 cut(s) | 1066 |
| CfoI | GCGC | 4 cut(s) | 28, 268, 576, 1554 |
| Cfr10I | RCCGGY | 2 cut(s) | 172, 677 |
| Cfr13I | GGNCC | 5 cut(s) | 175, 877, 950, 1566, 2199 |
| ClaI | ATCGAT | 1 cut(s) | 1950 |
| Csp6I | GTAC | 2 cut(s) | 341, 870 |
| CviQI | GTAC | 2 cut(s) | 341, 870 |
| DpnI | GATC | 9 cut(s) | 330, 821, 841, 936, 1725, 1785, 1953, 1989, 2477 |
| DpnII | GATC | 9 cut(s) | 328, 819, 839, 934, 1723, 1783, 1951, 1987, 2475 |
| DraI | TTTAAA | 2 cut(s) | 549, 2530 |
| Eam1104I | CTCTTC | 1 cut(s) | 1091 |
| EarI | CTCTTC | 1 cut(s) | 1091 |
| EciI | GGCGGA | 1 cut(s) | 1486 |
| Eco130I | CCWWGG | 2 cut(s) | 1931, 2203 |
| Eco32I | GATATC | 1 cut(s) | 1452 |
| Eco47I | GGWCC | 4 cut(s) | 877, 950, 1566, 2199 |
| Eco57I | CTGAAG | 3 cut(s) | 1064, 1763, 2480 |
| Eco88I | CYCGRG | 1 cut(s) | 587 |
| EcoO109I | RGGNCCY | 2 cut(s) | 877, 2199 |
| EcoRI | GAATTC | 1 cut(s) | 1170 |
| EcoRII | CCWGG | 2 cut(s) | 1543, 1891 |
| EcoRV | GATATC | 1 cut(s) | 1452 |
| EcoT14I | CCWWGG | 2 cut(s) | 1931, 2203 |
| EcoT22I | ATGCAT | 5 cut(s) | 605, 990, 1309, 1399, 1494 |
| ErhI | CCWWGG | 2 cut(s) | 1931, 2203 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1646, 1678 |
| FaqI | GGGAC | 4 cut(s) | 309, 1621, 2185, 2320 |
| FauI | CCCGC | 4 cut(s) | 83, 1159, 1224, 2225 |
| FbaI | TGATCA | 1 cut(s) | 934 |
| Fnu4HI | GCNGC | 7 cut(s) | 105, 366, 369, 1164, 1759, 1970, 2153 |
| FokI | GGATG | 8 cut(s) | 424, 563, 818, 1406, 1501, 1931, 2105, 2460 |
| Fsp4HI | GCNGC | 7 cut(s) | 105, 366, 369, 1164, 1759, 1970, 2153 |
| FspBI | CTAG | 5 cut(s) | 446, 917, 978, 1932, 2454 |
| FspI | TGCGCA | 2 cut(s) | 27, 267 |
| GlaI | GCGC | 4 cut(s) | 27, 267, 575, 1553 |
| GluI | GCNGC | 7 cut(s) | 105, 366, 369, 1164, 1759, 1970, 2153 |
| GsaI | CCCAGC | 1 cut(s) | 1732 |
| HaeIII | GGCC | 3 cut(s) | 176, 1825, 1926 |
| HapII | CCGG | 4 cut(s) | 173, 678, 953, 1571 |
| HhaI | GCGC | 4 cut(s) | 28, 268, 576, 1554 |
| Hin6I | GCGC | 4 cut(s) | 26, 266, 574, 1552 |
| HinP1I | GCGC | 4 cut(s) | 26, 266, 574, 1552 |
| HindIII | AAGCTT | 3 cut(s) | 203, 714, 2078 |
| HpaII | CCGG | 4 cut(s) | 173, 678, 953, 1571 |
| HphI | GGTGA | 2 cut(s) | 944, 1730 |
| Hpy166II | GTNNAC | 5 cut(s) | 761, 1532, 1566, 1768, 2005 |
| Hpy188I | TCNGA | 9 cut(s) | 62, 484, 751, 1105, 1449, 1647, 1875, 1966, 2128 |
| Hpy188III | TCNNGA | 9 cut(s) | 530, 1067, 1243, 1265, 1280, 1781, 1787, 1799, 1985 |
| Hpy8I | GTNNAC | 5 cut(s) | 761, 1532, 1566, 1768, 2005 |
| Hpy99I | CGWCG | 1 cut(s) | 1212 |
| HpyCH4III | ACNGT | 3 cut(s) | 634, 770, 1150 |
| HpyCH4IV | ACGT | 2 cut(s) | 391, 2556 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 580, 1012, 1549, 1558, 1888 |
| HpySE526I | ACGT | 2 cut(s) | 391, 2556 |
| HspAI | GCGC | 4 cut(s) | 26, 266, 574, 1552 |
| KflI | GGGWCCC | 1 cut(s) | 2199 |
| Ksp22I | TGATCA | 1 cut(s) | 934 |
| Kzo9I | GATC | 9 cut(s) | 328, 819, 839, 934, 1723, 1783, 1951, 1987, 2475 |
| LguI | GCTCTTC | 1 cut(s) | 1091 |
| LmnI | GCTCC | 3 cut(s) | 1022, 1121, 2482 |
| Lsp1109I | GCAGC | 6 cut(s) | 355, 377, 1150, 1745, 1981, 2139 |
| MaeI | CTAG | 5 cut(s) | 446, 917, 978, 1932, 2454 |
| MaeII | ACGT | 2 cut(s) | 391, 2556 |
| MaeIII | GTNAC | 2 cut(s) | 222, 1478 |
| MalI | GATC | 9 cut(s) | 330, 821, 841, 936, 1725, 1785, 1953, 1989, 2477 |
| MbiI | CCGCTC | 1 cut(s) | 1231 |
| MboI | GATC | 9 cut(s) | 328, 819, 839, 934, 1723, 1783, 1951, 1987, 2475 |
| MfeI | CAATTG | 3 cut(s) | 1388, 1521, 2193 |
| MflI | RGATCY | 4 cut(s) | 328, 1783, 1987, 2475 |
| MhlI | GDGCHC | 3 cut(s) | 411, 1223, 1770 |
| MlyI | GAGTC | 4 cut(s) | 535, 599, 690, 1660 |
| MmeI | TCCRAC | 3 cut(s) | 541, 1572, 1730 |
| Mph1103I | ATGCAT | 5 cut(s) | 605, 990, 1309, 1399, 1494 |
| MroXI | GAANNNNTTC | 7 cut(s) | 618, 786, 1077, 1617, 1794, 2070, 2223 |
| MseI | TTAA | 9 cut(s) | 36, 548, 1185, 1773, 1940, 2247, 2295, 2427, 2529 |
| MslI | CAYNNNNRTG | 4 cut(s) | 99, 598, 1095, 1439 |
| MspA1I | CMGCKG | 3 cut(s) | 368, 1821, 1972 |
| MspCI | CTTAAG | 1 cut(s) | 2426 |
| MspI | CCGG | 4 cut(s) | 173, 678, 953, 1571 |
| MspR9I | CCNGG | 4 cut(s) | 954, 1545, 1571, 1893 |
| MunI | CAATTG | 3 cut(s) | 1388, 1521, 2193 |
| Mva1269I | GAATGC | 2 cut(s) | 284, 539 |
| MvaI | CCWGG | 2 cut(s) | 1545, 1893 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 580, 1012, 1549, 1558, 1888 |
| NciI | CCSGG | 2 cut(s) | 954, 1571 |
| NcoI | CCATGG | 1 cut(s) | 2203 |
| NdeII | GATC | 9 cut(s) | 328, 819, 839, 934, 1723, 1783, 1951, 1987, 2475 |
| NlaIV | GGNNCC | 6 cut(s) | 1198, 1568, 2200, 2201, 2484, 2521 |
| NmuCI | GTSAC | 1 cut(s) | 222 |
| NsbI | TGCGCA | 2 cut(s) | 27, 267 |
| NsiI | ATGCAT | 5 cut(s) | 605, 990, 1309, 1399, 1494 |
| NspI | RCATGY | 4 cut(s) | 32, 341, 1350, 1401 |
| NspV | TTCGAA | 2 cut(s) | 711, 2460 |
| PaeI | GCATGC | 1 cut(s) | 32 |
| PaeR7I | CTCGAG | 1 cut(s) | 587 |
| PagI | TCATGA | 1 cut(s) | 1066 |
| PciI | ACATGT | 1 cut(s) | 337 |
| PciSI | GCTCTTC | 1 cut(s) | 1091 |
| PctI | GAATGC | 2 cut(s) | 284, 539 |
| PdmI | GAANNNNTTC | 7 cut(s) | 618, 786, 1077, 1617, 1794, 2070, 2223 |
| Pfl23II | CGTACG | 1 cut(s) | 869 |
| PkrI | GCNGC | 7 cut(s) | 106, 367, 370, 1165, 1760, 1971, 2154 |
| PleI | GAGTC | 4 cut(s) | 534, 598, 690, 1660 |
| PpsI | GAGTC | 4 cut(s) | 534, 598, 690, 1660 |
| PpuMI | RGGWCCY | 2 cut(s) | 877, 2199 |
| PscI | ACATGT | 1 cut(s) | 337 |
| PsiI | TTATAA | 2 cut(s) | 971, 2412 |
| Psp1406I | AACGTT | 1 cut(s) | 391 |
| Psp5II | RGGWCCY | 2 cut(s) | 877, 2199 |
| Psp6I | CCWGG | 2 cut(s) | 1543, 1891 |
| PspFI | CCCAGC | 1 cut(s) | 1728 |
| PspGI | CCWGG | 2 cut(s) | 1543, 1891 |
| PspLI | CGTACG | 1 cut(s) | 869 |
| PspN4I | GGNNCC | 6 cut(s) | 1198, 1568, 2200, 2201, 2484, 2521 |
| PspPI | GGNCC | 5 cut(s) | 175, 877, 950, 1566, 2199 |
| PspPPI | RGGWCCY | 2 cut(s) | 877, 2199 |
| PspXI | VCTCGAGB | 1 cut(s) | 587 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 603, 635 |
| PstI | CTGCAG | 1 cut(s) | 2157 |
| PsuI | RGATCY | 4 cut(s) | 328, 1783, 1987, 2475 |
| PvuII | CAGCTG | 3 cut(s) | 368, 1821, 1972 |
| RsaI | GTAC | 2 cut(s) | 342, 871 |
| RsaNI | GTAC | 2 cut(s) | 341, 870 |
| RseI | CAYNNNNRTG | 4 cut(s) | 99, 598, 1095, 1439 |
| SapI | GCTCTTC | 1 cut(s) | 1091 |
| SaqAI | TTAA | 9 cut(s) | 36, 548, 1185, 1773, 1940, 2247, 2295, 2427, 2529 |
| SatI | GCNGC | 7 cut(s) | 105, 366, 369, 1164, 1759, 1970, 2153 |
| Sau3AI | GATC | 9 cut(s) | 328, 819, 839, 934, 1723, 1783, 1951, 1987, 2475 |
| Sau96I | GGNCC | 5 cut(s) | 175, 877, 950, 1566, 2199 |
| SchI | GAGTC | 4 cut(s) | 535, 599, 690, 1660 |
| ScrFI | CCNGG | 4 cut(s) | 954, 1545, 1571, 1893 |
| SduI | GDGCHC | 3 cut(s) | 411, 1223, 1770 |
| SfcI | CTRYAG | 2 cut(s) | 834, 2153 |
| Sfr274I | CTCGAG | 1 cut(s) | 587 |
| SfuI | TTCGAA | 2 cut(s) | 711, 2460 |
| SinI | GGWCC | 4 cut(s) | 877, 950, 1566, 2199 |
| SlaI | CTCGAG | 1 cut(s) | 587 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 99, 598, 1095, 1439 |
| SmlI | CTYRAG | 5 cut(s) | 410, 538, 587, 1671, 2426 |
| SmoI | CTYRAG | 5 cut(s) | 410, 538, 587, 1671, 2426 |
| SphI | GCATGC | 1 cut(s) | 32 |
| SsiI | CCGC | 8 cut(s) | 76, 105, 1119, 1166, 1231, 1412, 1471, 2232 |
| SspI | AATATT | 1 cut(s) | 1844 |
| SspMI | CTAG | 5 cut(s) | 446, 917, 978, 1932, 2454 |
| StyD4I | CCNGG | 4 cut(s) | 952, 1543, 1569, 1891 |
| StyI | CCWWGG | 2 cut(s) | 1931, 2203 |
| TaaI | ACNGT | 3 cut(s) | 634, 770, 1150 |
| TaiI | ACGT | 2 cut(s) | 394, 2559 |
| TaqII | GACCGA | 1 cut(s) | 2114 |
| TauI | GCSGC | 1 cut(s) | 107 |
| Tru1I | TTAA | 9 cut(s) | 36, 548, 1185, 1773, 1940, 2247, 2295, 2427, 2529 |
| Tru9I | TTAA | 9 cut(s) | 36, 548, 1185, 1773, 1940, 2247, 2295, 2427, 2529 |
| TscAI | CASTG | 1 cut(s) | 637 |
| TseFI | GTSAC | 1 cut(s) | 222 |
| TseI | GCWGC | 6 cut(s) | 365, 368, 1163, 1758, 1969, 2152 |
| Tsp45I | GTSAC | 1 cut(s) | 222 |
| TspDTI | ATGAA | 8 cut(s) | 89, 399, 795, 822, 1086, 1935, 2076, 2178 |
| TspGWI | ACGGA | 1 cut(s) | 478 |
| TspRI | CASTG | 1 cut(s) | 637 |
| Vha464I | CTTAAG | 1 cut(s) | 2426 |
| VneI | GTGCAC | 1 cut(s) | 1766 |
| VpaK11BI | GGWCC | 4 cut(s) | 877, 950, 1566, 2199 |
| XapI | RAATTY | 5 cut(s) | 1170, 1700, 2049, 2358, 2525 |
| XceI | RCATGY | 4 cut(s) | 32, 341, 1350, 1401 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 2265 |
| XhoI | CTCGAG | 1 cut(s) | 587 |
| XmaJI | CCTAGG | 1 cut(s) | 1931 |
| XmnI | GAANNNNTTC | 7 cut(s) | 618, 786, 1077, 1617, 1794, 2070, 2223 |
| XspI | CTAG | 5 cut(s) | 446, 917, 978, 1932, 2454 |
| Zsp2I | ATGCAT | 5 cut(s) | 605, 990, 1309, 1399, 1494 |