Disease resistance protein (TIR-NBS-LRR class)
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| TIR | PF01582 | 12 - 193 | 6.5e-53 | TIR domain |
| TIR_2 | PF13676 | 15 - 111 | 3.7e-15 | TIR domain |
| AAA_16 | PF13191 | 192 - 310 | 1.8e-06 | AAA ATPase domain |
| NB-ARC | PF00931 | 197 - 362 | 7.4e-15 | NB-ARC domain |
| WHD_ROQ1 | PF23282 | 444 - 514 | 1.2e-18 | Disease resistance protein Roq1-like, winged-helix domain |
| LRR_14 | PF23598 | 771 - 884 | 2.1e-08 | Leucine-rich repeat region |
| LRR_13 | PF23286 | 876 - 1072 | 1.5e-11 | Disease resistance protein RPS4B-like, leucine-rich repeats |
| LRR_8 | PF13855 | 974 - 1029 | 6.1e-06 | Leucine rich repeat |
| C-JID | PF20160 | 1111 - 1246 | 4.6e-12 | C-JID domain |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 1001, 1827 |
| AatII | GACGTC | 1 cut(s) | 45 |
| AbsI | CCTCGAGG | 1 cut(s) | 3578 |
| Acc65I | GGTACC | 2 cut(s) | 345, 2746 |
| AccB1I | GGYRCC | 2 cut(s) | 345, 2746 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 3311 |
| AccII | CGCG | 3 cut(s) | 73, 1536, 1650 |
| AciI | CCGC | 4 cut(s) | 607, 1534, 1650, 2579 |
| AclI | AACGTT | 2 cut(s) | 1390, 2844 |
| AclWI | GGATC | 6 cut(s) | 323, 1658, 3296, 3385, 3612, 3753 |
| AcuI | CTGAAG | 5 cut(s) | 1094, 2096, 2448, 2657, 3176 |
| AcvI | CACGTG | 1 cut(s) | 1418 |
| AcyI | GRCGYC | 1 cut(s) | 42 |
| AdeI | CACNNNGTG | 2 cut(s) | 246, 1303 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 1378, 1779, 3311, 3607, 3742 |
| AflII | CTTAAG | 2 cut(s) | 1880, 2032 |
| AflIII | ACRYGT | 2 cut(s) | 337, 2169 |
| AhlI | ACTAGT | 1 cut(s) | 3797 |
| AjnI | CCWGG | 5 cut(s) | 411, 1555, 2064, 3563, 3741 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 2754, 2786 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 954, 986 |
| Alw21I | GWGCWC | 1 cut(s) | 2360 |
| Alw26I | GTCTC | 8 cut(s) | 119, 787, 1467, 1935, 2041, 2457, 2637, 3828 |
| AlwI | GGATC | 6 cut(s) | 323, 1658, 3296, 3385, 3612, 3753 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1622 |
| Ama87I | CYCGRG | 4 cut(s) | 1008, 1581, 1845, 3578 |
| AoxI | GGCC | 6 cut(s) | 768, 2062, 2516, 2971, 3574, 3739 |
| ApeKI | GCWGC | 9 cut(s) | 63, 431, 446, 1181, 1895, 2423, 2871, 3144, 3179 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 765, 797 |
| AseI | ATTAAT | 1 cut(s) | 165 |
| Asp700I | GAANNNNTTC | 5 cut(s) | 633, 1107, 1350, 1390, 2099 |
| Asp718I | GGTACC | 2 cut(s) | 345, 2746 |
| AspA2I | CCTAGG | 1 cut(s) | 2519 |
| AspLEI | GCGC | 3 cut(s) | 75, 2031, 3093 |
| AspS9I | GGNCC | 3 cut(s) | 409, 940, 3648 |
| AsuC2I | CCSGG | 1 cut(s) | 3336 |
| AsuHPI | GGTGA | 3 cut(s) | 3590, 3715, 3845 |
| AsuII | TTCGAA | 4 cut(s) | 178, 637, 726, 1124 |
| AsuNHI | GCTAGC | 1 cut(s) | 731 |
| AvaI | CYCGRG | 4 cut(s) | 1008, 1581, 1845, 3578 |
| AvaII | GGWCC | 3 cut(s) | 409, 940, 3648 |
| AvrII | CCTAGG | 1 cut(s) | 2519 |
| BaeGI | GKGCMC | 1 cut(s) | 2918 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 2738, 2771 |
| BanI | GGYRCC | 2 cut(s) | 345, 2746 |
| BanII | GRGCYC | 1 cut(s) | 3063 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 2069, 2101 |
| BbrPI | CACGTG | 1 cut(s) | 1418 |
| BbsI | GAAGAC | 2 cut(s) | 3113, 3164 |
| Bbv12I | GWGCWC | 1 cut(s) | 2360 |
| BbvI | GCAGC | 9 cut(s) | 75, 443, 458, 1168, 1907, 2435, 2858, 3131, 3166 |
| BceAI | ACGGC | 3 cut(s) | 2472, 3287, 3483 |
| BciT130I | CCWGG | 5 cut(s) | 413, 1557, 2066, 3565, 3743 |
| BclI | TGATCA | 3 cut(s) | 1726, 1765, 1804 |
| BcnI | CCSGG | 1 cut(s) | 3336 |
| BcoDI | GTCTC | 8 cut(s) | 119, 787, 1467, 1935, 2041, 2457, 2637, 3828 |
| BcuI | ACTAGT | 1 cut(s) | 3797 |
| BfmI | CTRYAG | 5 cut(s) | 648, 867, 1149, 2284, 2421 |
| BfoI | RGCGCY | 1 cut(s) | 3094 |
| BfrI | CTTAAG | 2 cut(s) | 1880, 2032 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 1676 |
| BglII | AGATCT | 3 cut(s) | 1291, 2239, 3781 |
| BisI | GCNGC | 9 cut(s) | 64, 432, 447, 1182, 1896, 2424, 2872, 3145, 3180 |
| BlnI | CCTAGG | 1 cut(s) | 2519 |
| BlsI | GCNGC | 9 cut(s) | 65, 433, 448, 1183, 1897, 2425, 2873, 3146, 3181 |
| BmcAI | AGTACT | 1 cut(s) | 559 |
| Bme1390I | CCNGG | 6 cut(s) | 413, 1557, 2066, 3336, 3565, 3743 |
| Bme18I | GGWCC | 3 cut(s) | 409, 940, 3648 |
| BmeT110I | CYCGRG | 4 cut(s) | 1008, 1581, 1845, 3578 |
| BmgT120I | GGNCC | 3 cut(s) | 409, 940, 3648 |
| BmiI | GGNNCC | 8 cut(s) | 347, 893, 1054, 1546, 1700, 2606, 2748, 3016 |
| BmrFI | CCNGG | 6 cut(s) | 413, 1557, 2066, 3336, 3565, 3743 |
| BmtI | GCTAGC | 1 cut(s) | 735 |
| BpiI | GAAGAC | 2 cut(s) | 3113, 3164 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 2843, 2875 |
| BpmI | CTGGAG | 4 cut(s) | 878, 1578, 1946, 2027 |
| Bpu14I | TTCGAA | 4 cut(s) | 178, 637, 726, 1124 |
| BpuEI | CTTGAG | 6 cut(s) | 167, 538, 2729, 2831, 2870, 3047 |
| BpuMI | CCSGG | 1 cut(s) | 3336 |
| Bsa29I | ATCGAT | 1 cut(s) | 1455 |
| BsaAI | YACGTR | 2 cut(s) | 1418, 2089 |
| BsaBI | GATNNNNATC | 2 cut(s) | 3198, 3780 |
| BsaHI | GRCGYC | 1 cut(s) | 42 |
| BsaI | GGTCTC | 1 cut(s) | 2457 |
| BsaJI | CCNNGG | 5 cut(s) | 1844, 1973, 2217, 2519, 3736 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 954, 984 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 1378, 1779, 3311, 3607, 3742 |
| Bse118I | RCCGGY | 1 cut(s) | 1184 |
| Bse1I | ACTGG | 3 cut(s) | 276, 1254, 1627 |
| Bse3DI | GCAATG | 1 cut(s) | 2990 |
| Bse8I | GATNNNNATC | 2 cut(s) | 3198, 3780 |
| BseBI | CCWGG | 5 cut(s) | 413, 1557, 2066, 3565, 3743 |
| BseCI | ATCGAT | 1 cut(s) | 1455 |
| BseDI | CCNNGG | 5 cut(s) | 1844, 1973, 2217, 2519, 3736 |
| BseJI | GATNNNNATC | 2 cut(s) | 3198, 3780 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 1378, 1779, 3311, 3607, 3742 |
| BseMI | GCAATG | 1 cut(s) | 2990 |
| BseMII | CTCAG | 5 cut(s) | 2874, 2950, 3289, 3839, 3870 |
| BseNI | ACTGG | 3 cut(s) | 276, 1254, 1627 |
| BseRI | GAGGAG | 3 cut(s) | 777, 1833, 2234 |
| BseSI | GKGCMC | 1 cut(s) | 2918 |
| BseXI | GCAGC | 9 cut(s) | 75, 443, 458, 1168, 1907, 2435, 2858, 3131, 3166 |
| BseYI | CCCAGC | 1 cut(s) | 2608 |
| Bsh1236I | CGCG | 3 cut(s) | 73, 1536, 1650 |
| BshFI | GGCC | 6 cut(s) | 770, 2064, 2518, 2973, 3576, 3741 |
| BshNI | GGYRCC | 2 cut(s) | 345, 2746 |
| BshVI | ATCGAT | 1 cut(s) | 1455 |
| BsiHKAI | GWGCWC | 1 cut(s) | 2360 |
| BsiHKCI | CYCGRG | 4 cut(s) | 1008, 1581, 1845, 3578 |
| BsiSI | CCGG | 3 cut(s) | 960, 1185, 3335 |
| BslFI | GGGAC | 2 cut(s) | 2804, 2948 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 1378, 1779, 3311, 3607, 3742 |
| BsmAI | GTCTC | 8 cut(s) | 119, 787, 1467, 1935, 2041, 2457, 2637, 3828 |
| BsmFI | GGGAC | 2 cut(s) | 2804, 2948 |
| BsmI | GAATGC | 8 cut(s) | 281, 591, 1132, 1188, 1213, 1866, 3208, 3500 |
| BsnI | GGCC | 6 cut(s) | 770, 2064, 2518, 2973, 3576, 3741 |
| Bso31I | GGTCTC | 1 cut(s) | 2457 |
| BsoBI | CYCGRG | 4 cut(s) | 1008, 1581, 1845, 3578 |
| Bsp119I | TTCGAA | 4 cut(s) | 178, 637, 726, 1124 |
| Bsp1286I | GDGCHC | 3 cut(s) | 2360, 2918, 3063 |
| Bsp1407I | TGTACA | 3 cut(s) | 1575, 2139, 3612 |
| BspACI | CCGC | 4 cut(s) | 607, 1534, 1650, 2579 |
| BspANI | GGCC | 6 cut(s) | 770, 2064, 2518, 2973, 3576, 3741 |
| BspCNI | CTCAG | 5 cut(s) | 2873, 2949, 3288, 3838, 3871 |
| BspDI | ATCGAT | 1 cut(s) | 1455 |
| BspFNI | CGCG | 3 cut(s) | 73, 1536, 1650 |
| BspHI | TCATGA | 1 cut(s) | 3748 |
| BspLI | GGNNCC | 8 cut(s) | 347, 893, 1054, 1546, 1700, 2606, 2748, 3016 |
| BspMAI | CTGCAG | 1 cut(s) | 2425 |
| BspOI | GCTAGC | 1 cut(s) | 735 |
| BspPI | GGATC | 6 cut(s) | 323, 1658, 3296, 3385, 3612, 3753 |
| BspQI | GCTCTTC | 1 cut(s) | 1121 |
| BspT104I | TTCGAA | 4 cut(s) | 178, 637, 726, 1124 |
| BspT107I | GGYRCC | 2 cut(s) | 345, 2746 |
| BspTI | CTTAAG | 2 cut(s) | 1880, 2032 |
| BspTNI | GGTCTC | 1 cut(s) | 2457 |
| BsrDI | GCAATG | 1 cut(s) | 2990 |
| BsrFI | RCCGGY | 1 cut(s) | 1184 |
| BsrGI | TGTACA | 3 cut(s) | 1575, 2139, 3612 |
| BsrI | ACTGG | 3 cut(s) | 276, 1254, 1627 |
| BssAI | RCCGGY | 1 cut(s) | 1184 |
| BssECI | CCNNGG | 5 cut(s) | 1844, 1973, 2217, 2519, 3736 |
| BssNI | GRCGYC | 1 cut(s) | 42 |
| BssT1I | CCWWGG | 3 cut(s) | 1973, 2519, 3736 |
| Bst2UI | CCWGG | 5 cut(s) | 413, 1557, 2066, 3565, 3743 |
| Bst4CI | ACNGT | 4 cut(s) | 484, 1489, 1823, 3163 |
| Bst6I | CTCTTC | 7 cut(s) | 16, 180, 721, 1113, 1121, 1621, 1938 |
| BstACI | GRCGYC | 1 cut(s) | 42 |
| BstAFI | CTTAAG | 2 cut(s) | 1880, 2032 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 604, 1412 |
| BstAUI | TGTACA | 3 cut(s) | 1575, 2139, 3612 |
| BstBAI | YACGTR | 2 cut(s) | 1418, 2089 |
| BstBI | TTCGAA | 4 cut(s) | 178, 637, 726, 1124 |
| BstC8I | GCNNGC | 6 cut(s) | 304, 733, 1186, 2494, 2614, 3089 |
| BstFNI | CGCG | 3 cut(s) | 73, 1536, 1650 |
| BstH2I | RGCGCY | 1 cut(s) | 3094 |
| BstHHI | GCGC | 3 cut(s) | 75, 2031, 3093 |
| BstMAI | GTCTC | 8 cut(s) | 119, 787, 1467, 1935, 2041, 2457, 2637, 3828 |
| BstNI | CCWGG | 5 cut(s) | 413, 1557, 2066, 3565, 3743 |
| BstNSI | RCATGY | 3 cut(s) | 341, 2173, 3053 |
| BstSCI | CCNGG | 6 cut(s) | 411, 1555, 2064, 3334, 3563, 3741 |
| BstSFI | CTRYAG | 5 cut(s) | 648, 867, 1149, 2284, 2421 |
| BstSLI | GKGCMC | 1 cut(s) | 2918 |
| BstSNI | TACGTA | 1 cut(s) | 2089 |
| BstUI | CGCG | 3 cut(s) | 73, 1536, 1650 |
| BstV1I | GCAGC | 9 cut(s) | 75, 443, 458, 1168, 1907, 2435, 2858, 3131, 3166 |
| BstV2I | GAAGAC | 2 cut(s) | 3113, 3164 |
| BstX2I | RGATCY | 6 cut(s) | 328, 1291, 2239, 3377, 3617, 3781 |
| BstYI | RGATCY | 6 cut(s) | 328, 1291, 2239, 3377, 3617, 3781 |
| Bsu15I | ATCGAT | 1 cut(s) | 1455 |
| BsuRI | GGCC | 6 cut(s) | 770, 2064, 2518, 2973, 3576, 3741 |
| BsuTUI | ATCGAT | 1 cut(s) | 1455 |
| BtsIMutI | CAGTG | 4 cut(s) | 480, 2910, 2944, 3152 |
| Cac8I | GCNNGC | 6 cut(s) | 304, 733, 1186, 2494, 2614, 3089 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1622 |
| CciI | TCATGA | 1 cut(s) | 3748 |
| CfoI | GCGC | 3 cut(s) | 75, 2031, 3093 |
| Cfr10I | RCCGGY | 1 cut(s) | 1184 |
| Cfr13I | GGNCC | 3 cut(s) | 409, 940, 3648 |
| ClaI | ATCGAT | 1 cut(s) | 1455 |
| CseI | GACGC | 1 cut(s) | 3042 |
| CsiI | ACCWGGT | 1 cut(s) | 411 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 3114, 3149 |
| DraI | TTTAAA | 4 cut(s) | 108, 2278, 2412, 2841 |
| DraIII | CACNNNGTG | 2 cut(s) | 246, 1303 |
| Eam1104I | CTCTTC | 7 cut(s) | 16, 180, 721, 1113, 1121, 1621, 1938 |
| EarI | CTCTTC | 7 cut(s) | 16, 180, 721, 1113, 1121, 1621, 1938 |
| Eco105I | TACGTA | 1 cut(s) | 2089 |
| Eco130I | CCWWGG | 3 cut(s) | 1973, 2519, 3736 |
| Eco147I | AGGCCT | 1 cut(s) | 2518 |
| Eco24I | GRGCYC | 1 cut(s) | 3063 |
| Eco31I | GGTCTC | 1 cut(s) | 2457 |
| Eco32I | GATATC | 2 cut(s) | 1952, 2793 |
| Eco47I | GGWCC | 3 cut(s) | 409, 940, 3648 |
| Eco57I | CTGAAG | 5 cut(s) | 1094, 2096, 2448, 2657, 3176 |
| Eco72I | CACGTG | 1 cut(s) | 1418 |
| Eco88I | CYCGRG | 4 cut(s) | 1008, 1581, 1845, 3578 |
| EcoRI | GAATTC | 1 cut(s) | 639 |
| EcoRII | CCWGG | 5 cut(s) | 411, 1555, 2064, 3563, 3741 |
| EcoRV | GATATC | 2 cut(s) | 1952, 2793 |
| EcoT14I | CCWWGG | 3 cut(s) | 1973, 2519, 3736 |
| EcoT22I | ATGCAT | 3 cut(s) | 1500, 1866, 1969 |
| EcoT38I | GRGCYC | 1 cut(s) | 3063 |
| ErhI | CCWWGG | 3 cut(s) | 1973, 2519, 3736 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 1338, 1370, 3552, 3584, 3829, 3861 |
| FaqI | GGGAC | 2 cut(s) | 2804, 2948 |
| FauI | CCCGC | 1 cut(s) | 600 |
| FbaI | TGATCA | 3 cut(s) | 1726, 1765, 1804 |
| Fnu4HI | GCNGC | 9 cut(s) | 64, 432, 447, 1182, 1896, 2424, 2872, 3145, 3180 |
| FriOI | GRGCYC | 1 cut(s) | 3063 |
| Fsp4HI | GCNGC | 9 cut(s) | 64, 432, 447, 1182, 1896, 2424, 2872, 3145, 3180 |
| GlaI | GCGC | 3 cut(s) | 74, 2030, 3092 |
| GluI | GCNGC | 9 cut(s) | 64, 432, 447, 1182, 1896, 2424, 2872, 3145, 3180 |
| GsaI | CCCAGC | 1 cut(s) | 2612 |
| GsuI | CTGGAG | 4 cut(s) | 878, 1578, 1946, 2027 |
| HaeII | RGCGCY | 1 cut(s) | 3094 |
| HaeIII | GGCC | 6 cut(s) | 770, 2064, 2518, 2973, 3576, 3741 |
| HapII | CCGG | 3 cut(s) | 960, 1185, 3335 |
| HgaI | GACGC | 1 cut(s) | 3042 |
| HhaI | GCGC | 3 cut(s) | 75, 2031, 3093 |
| Hin1I | GRCGYC | 1 cut(s) | 42 |
| Hin6I | GCGC | 3 cut(s) | 73, 2029, 3091 |
| HinP1I | GCGC | 3 cut(s) | 73, 2029, 3091 |
| HincII | GTYRAC | 4 cut(s) | 1722, 1761, 1800, 1839 |
| HindII | GTYRAC | 4 cut(s) | 1722, 1761, 1800, 1839 |
| HindIII | AAGCTT | 2 cut(s) | 2330, 3395 |
| HpaII | CCGG | 3 cut(s) | 960, 1185, 3335 |
| HphI | GGTGA | 3 cut(s) | 3590, 3715, 3845 |
| Hpy166II | GTNNAC | 9 cut(s) | 1578, 1722, 1761, 1800, 1839, 2723, 3613, 3651, 3902 |
| Hpy8I | GTNNAC | 9 cut(s) | 1578, 1722, 1761, 1800, 1839, 2723, 3613, 3651, 3902 |
| HpyAV | CCTTC | 9 cut(s) | 391, 1158, 1783, 1822, 2316, 2384, 2448, 2508, 3104 |
| HpyCH4III | ACNGT | 4 cut(s) | 484, 1489, 1823, 3163 |
| HpyCH4IV | ACGT | 7 cut(s) | 42, 1390, 1417, 1830, 2088, 2844, 3075 |
| HpySE526I | ACGT | 7 cut(s) | 42, 1390, 1417, 1830, 2088, 2844, 3075 |
| Hsp92I | GRCGYC | 1 cut(s) | 42 |
| HspAI | GCGC | 3 cut(s) | 73, 2029, 3091 |
| KpnI | GGTACC | 2 cut(s) | 349, 2750 |
| KroI | GCCGGC | 1 cut(s) | 1184 |
| KroNI | GCCGGC | 1 cut(s) | 1186 |
| Ksp22I | TGATCA | 3 cut(s) | 1726, 1765, 1804 |
| LguI | GCTCTTC | 1 cut(s) | 1121 |
| LmnI | GCTCC | 8 cut(s) | 897, 1052, 1135, 1698, 2221, 2610, 3117, 3809 |
| Lsp1109I | GCAGC | 9 cut(s) | 75, 443, 458, 1168, 1907, 2435, 2858, 3131, 3166 |
| MabI | ACCWGGT | 1 cut(s) | 411 |
| MaeII | ACGT | 7 cut(s) | 42, 1390, 1417, 1830, 2088, 2844, 3075 |
| MaeIII | GTNAC | 7 cut(s) | 333, 2172, 2695, 2863, 3080, 3319, 3478 |
| MfeI | CAATTG | 3 cut(s) | 186, 2757, 2948 |
| MflI | RGATCY | 6 cut(s) | 328, 1291, 2239, 3377, 3617, 3781 |
| MhlI | GDGCHC | 3 cut(s) | 2360, 2918, 3063 |
| MlyI | GAGTC | 6 cut(s) | 705, 868, 1834, 1937, 3516, 3830 |
| MmeI | TCCRAC | 2 cut(s) | 3062, 3149 |
| Mph1103I | ATGCAT | 3 cut(s) | 1500, 1866, 1969 |
| MroNI | GCCGGC | 1 cut(s) | 1184 |
| MroXI | GAANNNNTTC | 5 cut(s) | 633, 1107, 1350, 1390, 2099 |
| MslI | CAYNNNNRTG | 4 cut(s) | 1457, 1908, 3487, 3701 |
| MspA1I | CMGCKG | 3 cut(s) | 25, 2426, 3363 |
| MspCI | CTTAAG | 2 cut(s) | 1880, 2032 |
| MspI | CCGG | 3 cut(s) | 960, 1185, 3335 |
| MspR9I | CCNGG | 6 cut(s) | 413, 1557, 2066, 3336, 3565, 3743 |
| MunI | CAATTG | 3 cut(s) | 186, 2757, 2948 |
| Mva1269I | GAATGC | 8 cut(s) | 281, 591, 1132, 1188, 1213, 1866, 3208, 3500 |
| MvaI | CCWGG | 5 cut(s) | 413, 1557, 2066, 3565, 3743 |
| MvnI | CGCG | 3 cut(s) | 73, 1536, 1650 |
| NaeI | GCCGGC | 1 cut(s) | 1186 |
| NciI | CCSGG | 1 cut(s) | 3336 |
| NgoMIV | GCCGGC | 1 cut(s) | 1184 |
| NheI | GCTAGC | 1 cut(s) | 731 |
| NlaIV | GGNNCC | 8 cut(s) | 347, 893, 1054, 1546, 1700, 2606, 2748, 3016 |
| NmuCI | GTSAC | 2 cut(s) | 333, 3478 |
| NsiI | ATGCAT | 3 cut(s) | 1500, 1866, 1969 |
| NspI | RCATGY | 3 cut(s) | 341, 2173, 3053 |
| NspV | TTCGAA | 4 cut(s) | 178, 637, 726, 1124 |
| PaeR7I | CTCGAG | 3 cut(s) | 1008, 1581, 3578 |
| PagI | TCATGA | 1 cut(s) | 3748 |
| PceI | AGGCCT | 1 cut(s) | 2518 |
| PciI | ACATGT | 2 cut(s) | 337, 2169 |
| PciSI | GCTCTTC | 1 cut(s) | 1121 |
| PctI | GAATGC | 8 cut(s) | 281, 591, 1132, 1188, 1213, 1866, 3208, 3500 |
| PdiI | GCCGGC | 1 cut(s) | 1186 |
| PdmI | GAANNNNTTC | 5 cut(s) | 633, 1107, 1350, 1390, 2099 |
| PflFI | GACNNNGTC | 1 cut(s) | 3163 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 3311 |
| PkrI | GCNGC | 9 cut(s) | 65, 433, 448, 1183, 1897, 2425, 2873, 3146, 3181 |
| PleI | GAGTC | 6 cut(s) | 705, 867, 1834, 1936, 3516, 3829 |
| PmaCI | CACGTG | 1 cut(s) | 1418 |
| PmlI | CACGTG | 1 cut(s) | 1418 |
| PpsI | GAGTC | 6 cut(s) | 705, 867, 1834, 1936, 3516, 3829 |
| Ppu21I | YACGTR | 2 cut(s) | 1418, 2089 |
| PscI | ACATGT | 2 cut(s) | 337, 2169 |
| PshBI | ATTAAT | 1 cut(s) | 165 |
| PsiI | TTATAA | 2 cut(s) | 1001, 1827 |
| Psp1406I | AACGTT | 2 cut(s) | 1390, 2844 |
| Psp6I | CCWGG | 5 cut(s) | 411, 1555, 2064, 3563, 3741 |
| PspCI | CACGTG | 1 cut(s) | 1418 |
| PspFI | CCCAGC | 1 cut(s) | 2608 |
| PspGI | CCWGG | 5 cut(s) | 411, 1555, 2064, 3563, 3741 |
| PspN4I | GGNNCC | 8 cut(s) | 347, 893, 1054, 1546, 1700, 2606, 2748, 3016 |
| PspPI | GGNCC | 3 cut(s) | 409, 940, 3648 |
| PspXI | VCTCGAGB | 1 cut(s) | 3578 |
| PstI | CTGCAG | 1 cut(s) | 2425 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1622 |
| PsuI | RGATCY | 6 cut(s) | 328, 1291, 2239, 3377, 3617, 3781 |
| PsyI | GACNNNGTC | 1 cut(s) | 3163 |
| PvuII | CAGCTG | 3 cut(s) | 25, 2426, 3363 |
| RseI | CAYNNNNRTG | 4 cut(s) | 1457, 1908, 3487, 3701 |
| SapI | GCTCTTC | 1 cut(s) | 1121 |
| SatI | GCNGC | 9 cut(s) | 64, 432, 447, 1182, 1896, 2424, 2872, 3145, 3180 |
| Sau96I | GGNCC | 3 cut(s) | 409, 940, 3648 |
| ScaI | AGTACT | 1 cut(s) | 559 |
| SchI | GAGTC | 6 cut(s) | 705, 868, 1834, 1937, 3516, 3830 |
| ScrFI | CCNGG | 6 cut(s) | 413, 1557, 2066, 3336, 3565, 3743 |
| SduI | GDGCHC | 3 cut(s) | 2360, 2918, 3063 |
| SexAI | ACCWGGT | 1 cut(s) | 411 |
| SfcI | CTRYAG | 5 cut(s) | 648, 867, 1149, 2284, 2421 |
| Sfr274I | CTCGAG | 3 cut(s) | 1008, 1581, 3578 |
| SfuI | TTCGAA | 4 cut(s) | 178, 637, 726, 1124 |
| SinI | GGWCC | 3 cut(s) | 409, 940, 3648 |
| SlaI | CTCGAG | 3 cut(s) | 1008, 1581, 3578 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 1457, 1908, 3487, 3701 |
| SnaBI | TACGTA | 1 cut(s) | 2089 |
| SpeI | ACTAGT | 1 cut(s) | 3797 |
| SseBI | AGGCCT | 1 cut(s) | 2518 |
| SsiI | CCGC | 4 cut(s) | 607, 1534, 1650, 2579 |
| SspI | AATATT | 3 cut(s) | 1447, 1689, 2365 |
| StuI | AGGCCT | 1 cut(s) | 2518 |
| StyD4I | CCNGG | 6 cut(s) | 411, 1555, 2064, 3334, 3563, 3741 |
| StyI | CCWWGG | 3 cut(s) | 1973, 2519, 3736 |
| TaaI | ACNGT | 4 cut(s) | 484, 1489, 1823, 3163 |
| TaiI | ACGT | 7 cut(s) | 45, 1393, 1420, 1833, 2091, 2847, 3078 |
| TatI | WGTACW | 6 cut(s) | 557, 1324, 1575, 2124, 2139, 3612 |
| TscAI | CASTG | 4 cut(s) | 487, 2910, 2944, 3159 |
| TseFI | GTSAC | 2 cut(s) | 333, 3478 |
| TseI | GCWGC | 9 cut(s) | 63, 431, 446, 1181, 1895, 2423, 2871, 3144, 3179 |
| Tsp45I | GTSAC | 2 cut(s) | 333, 3478 |
| TspGWI | ACGGA | 4 cut(s) | 321, 1756, 1795, 2714 |
| TspRI | CASTG | 4 cut(s) | 487, 2910, 2944, 3159 |
| Tth111I | GACNNNGTC | 1 cut(s) | 3163 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 3311 |
| Vha464I | CTTAAG | 2 cut(s) | 1880, 2032 |
| VpaK11BI | GGWCC | 3 cut(s) | 409, 940, 3648 |
| VspI | ATTAAT | 1 cut(s) | 165 |
| XbaI | TCTAGA | 2 cut(s) | 2929, 3784 |
| XceI | RCATGY | 3 cut(s) | 341, 2173, 3053 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 247 |
| XhoI | CTCGAG | 3 cut(s) | 1008, 1581, 3578 |
| XmaJI | CCTAGG | 1 cut(s) | 2519 |
| XmnI | GAANNNNTTC | 5 cut(s) | 633, 1107, 1350, 1390, 2099 |
| ZraI | GACGTC | 1 cut(s) | 43 |
| ZrmI | AGTACT | 1 cut(s) | 559 |
| Zsp2I | ATGCAT | 3 cut(s) | 1500, 1866, 1969 |