RLG00000029508

TMV resistance protein N-like

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
Physical Location & Seq
Forward (+)
39653062 .. 39656142
3081 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000029508

Sequence Viewer

Length: 1932 bp
ATGGCTACCTCTTCCTTTTCTTCTTCTGTCATCCGCCCAAAGGAAAAGTATGATGTCTTTCTCAGTTTCAGAGTCCAGGACACTCGCAGGACCTTTACCAGCCATCTTCATGCTGATCTGATAAAGAGGAAAGTGGAAACCTACATTGATTATAGACTTGAGAGAGGAGATGAAGTTGGACCTGCCCTATTAAAAGCAATCAAGGAATCAAAGATTTCTGTGATCATTTTCTCGAAAGACTATGCTTCTTCCACATGGTGCTTGGCTGAACTTGCTTATATACTGGAATGCAAGGAAACACATGGACAACATGTTATGCCTATTTTTTATGAAATAGAACCATCACAAGTGCGCTACCAGACCGGAAGTTATGAGACTGCATTTGCTCAACATGAACAATGGTTGAAGGACAAGACGGACAAGGTGGCCACGTGGAAGGAAGCTTTAGTAAAACTAGCCAACCTAATGCCGTTGCTGATCATGAACGAAGACATTATCCCAGATGACGTTCGTGTTCGCTCTGTTGTTATCTGGGGTATGGGTGGTATTGCAAGACCACGCTTGCTGATGCTGTATTTCACGGACTCTCTTCTCAATTCGAAGCTCACTGTTTTCTTGAAAATGTTAGGGAACGATCAGAGCAAAGAAGAACAGGAACTTTTGTGGGAGAAATTGAAAAAGTTTCCTGATGATGACCTTCAAAATGTGTACAGAGAAAGTTTTGATGGATTAAAAGGAAATGAGAAGGAGATATTCCTTGATATAGCATGTTTTCACAAAAAGGAGAAACTCTGTGATGCAAAAAGAATGTTAGCTGCCTGTGGTTTATTTCCAGATGAGATAGTCCGGGGAGAATGTATTGAAGAGCCAGGAAAACGCAGTAGGTTGCACAATGGTGAGGACGTCTGTCATGTATTGAAAAGGAATATGGGAACTGCCAAAGTACAAAGCATTTCCAGCAGGAATTGTGTTAACACAGTAATGTTGGATCCTCAAGCTTTCACAGGCTTGCATAACTTAAGATTCCTTATGCTTAGATTTATACATCTTGATGACAAGGCAAATCTAGAATATCTGCCTGATGCCCTTCAATATCTTTTTTGGCATAGTTACCCTTTGAAATCTTTTCCATCAAAGTTTTCTCCGAACAATCTTGTTGAGCTTCATATGCCCTGGTGCAAACTCAAGAGACTTTGGAATAAAGGCCAGAATCCTGATAAGTTGAAAAGGATCGATCTTAGTTTCTCCATTTTCCTGGCCGATGTTGGAGAGCTGTCAAATAGTGTAAACATTGAGAGTATCAATCTTCAAGGCTGTAGTAGTTTGGTTCAAGTTCCAAATTTGTCAAAGTGTGTATACATTAAGAGTATAAATCTCCTAGGCTGTGCAAGTTTGGTTCAAGTTCCAGACCTGTCAAAGAGTGTAAACATTGAGAGTATAAATCTTCAAAGCTGTGCAGATTTGGTTCAAGTTCCTTCATACTTTCAAAGGTTTACCAAGCTTACTTATCTGAATTTGGGATGTTGCTTGAAGATTAGTGTTCTACCAAAGTTACCAAGCAAGATGGAGTTCTTAGATTTAAGTGAAACTGCAGTAGAAGAATTGCCTCCATCAATTTGTTCTCTTGGAAAACTTCTTAAATTGAATCTTCATGGATGCAGTTCCATGAAATATCTTTCGAGCAGTCCATGGAAGATTAAATCCCTGAATTATCTTTCTTTGAGCGAGACATATATAGAAACGGTGCCTTCGTCATCGTTCAAGTGTATGACTGGGCTCATTTCAGTTGACCTGAGTGATTGTCATTGCCTCGTCAGTCTCCCAACCGACATTTGTGAGTTGAAATCTCTTCAGAGACTTGATCTCTCTCGTTGCTGTCATTTCACAAAATTTCAAAATTGTGGAGCCTATGGAACATCTGCAGTATCTTAA

Protein Analysis

644

Amino Acids

73.14

Weight (kDa)

8.05

Isoelectric Point (pI)

47.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TIR PF01582 16 - 154 4e-46 TIR domain
TIR_2 PF13676 19 - 114 6.6e-13 TIR domain
WHD_ROQ1 PF23282 247 - 279 7.2e-07 Disease resistance protein Roq1-like, winged-helix domain
LRR_8 PF13855 568 - 625 9.1e-06 Leucine rich repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000020)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g26600 FvH4_2g27070 FvH4_2g27070 FvH4_2g27070 FvH4_2g27370 FvH4_2g27370 FvH4_2g27370 FvH4_2g27370 FvH4_2g27370 FvH4_2g27370 FvH4_2g27370 FvH4_2g27370 FvH4_2g27701 FvH4_2g27720 FvH4_3g05740 FvH4_3g05740 FvH4_3g05740 FvH4_3g05740 FvH4_3g15720 FvH4_5g35770 FvH4_5g35770 FvH4_5g35770 FvH4_5g35770 FvH4_5g35770 FvH4_6g34390 FvH4_6g34410 FvH4_6g34410
malus_domestica MD02G1278900.v1.1 MD03G1127300.v1.1 MD04G1027100.v1.1 MD04G1035000.v1.1 MD04G1035200.v1.1 MD04G1035600.v1.1 MD04G1036000.v1.1 MD04G1036100.v1.1 MD04G1036400.v1.1 MD05G1125400.v1.1 MD05G1125600.v1.1 MD05G1125700.v1.1 MD05G1126000.v1.1 MD05G1131900.v1.1 MD05G1132400.v1.1 MD05G1132600.v1.1 MD05G1132800.v1.1 MD05G1135700.v1.1 MD05G1135800.v1.1 MD05G1136700.v1.1 MD05G1137400.v1.1 MD05G1137900.v1.1 MD05G1138300.v1.1 MD05G1138400.v1.1 MD05G1138500.v1.1 MD05G1141700.v1.1 MD05G1142600.v1.1 MD05G1143300.v1.1 MD05G1145200.v1.1 MD05G1146500.v1.1 MD05G1146600.v1.1 MD05G1147100.v1.1 MD05G1147500.v1.1 MD05G1147600.v1.1 MD05G1148300.v1.1 MD05G1148600.v1.1 MD05G1149400.v1.1 MD05G1149500.v1.1 MD05G1150100.v1.1 MD05G1150200.v1.1 MD05G1150900.v1.1 MD05G1151200.v1.1 MD08G1168700.v1.1 MD10G1128400.v1.1 MD10G1128500.v1.1 MD10G1128600.v1.1 MD10G1134800.v1.1 MD10G1135300.v1.1 MD10G1135800.v1.1 MD10G1135900.v1.1 MD10G1136100.v1.1 MD10G1136200.v1.1 MD10G1136400.v1.1 MD10G1136500.v1.1 MD10G1136600.v1.1 MD10G1137100.v1.1 MD10G1137400.v1.1 MD10G1137500.v1.1 MD10G1137700.v1.1 MD10G1140900.v1.1 MD10G1141100.v1.1 MD10G1141400.v1.1 MD12G1073200.v1.1 MD12G1074900.v1.1 MD16G1140700.v1.1
prunus_persica Prupe.1G160400_v2.0.a1 Prupe.1G160500_v2.0.a1 Prupe.2G060400_v2.0.a1 Prupe.2G060400_v2.0.a1 Prupe.2G060400_v2.0.a1 Prupe.2G060400_v2.0.a1 Prupe.2G060400_v2.0.a1 Prupe.2G060400_v2.0.a1 Prupe.2G083200_v2.0.a1 Prupe.6G152300_v2.0.a1 Prupe.8G037000_v2.0.a1 Prupe.8G117300_v2.0.a1 Prupe.8G117700_v2.0.a1 Prupe.8G118900_v2.0.a1 Prupe.8G173600_v2.0.a1 Prupe.8G173700_v2.0.a1 Prupe.8G176400_v2.0.a1 Prupe.8G179400_v2.0.a1 Prupe.8G179500_v2.0.a1 Prupe.8G179500_v2.0.a1 Prupe.8G179500_v2.0.a1 Prupe.8G179500_v2.0.a1 Prupe.8G179500_v2.0.a1 Prupe.8G179500_v2.0.a1 Prupe.8G179500_v2.0.a1 Prupe.8G179500_v2.0.a1 Prupe.8G179500_v2.0.a1 Prupe.8G179500_v2.0.a1 Prupe.8G179500_v2.0.a1 Prupe.8G237200_v2.0.a1 Prupe.I001800_v2.0.a1 Prupe.I002000_v2.0.a1 Prupe.I002100_v2.0.a1 Prupe.I002200_v2.0.a1 Prupe.I002300_v2.0.a1 Prupe.I002300_v2.0.a1 Prupe.I002300_v2.0.a1
pyrus_communis pycom02g10490 pycom03g08410 pycom04g02350 pycom04g02370 pycom04g02890 pycom04g02920 pycom04g02930 pycom05g09430 pycom05g11970 pycom05g11980 pycom05g12000 pycom05g12010 pycom05g12040 pycom05g12080 pycom05g12100 pycom05g12110 pycom05g12160 pycom05g12910 pycom05g12920 pycom05g12940 pycom05g13220 pycom05g13230 pycom05g13260 pycom05g13300 pycom05g13320 pycom05g13330 pycom05g13350 pycom05g13680 pycom05g13710 pycom05g13720 pycom05g13730 pycom05g14120 pycom05g14130 pycom05g14160 pycom05g14210 pycom05g14250 pycom05g14280 pycom05g14290 pycom05g14340 pycom05g14390 pycom05g14430 pycom05g14460 pycom05g14530 pycom05g14560 pycom05g14570 pycom05g14580 pycom10g11010 pycom10g11020 pycom10g11030 pycom10g11250 pycom10g11640 pycom10g11670 pycom10g11680 pycom10g11720 pycom10g11730 pycom10g11950 pycom10g11960 pycom10g12000 pycom10g12050 pycom10g12070 pycom10g12310
rosa_chinensis RchiOBHm_Chr1g0314371 RchiOBHm_Chr1g0314461 RchiOBHm_Chr1g0314491 RchiOBHm_Chr1g0314661 RchiOBHm_Chr1g0314671 RchiOBHm_Chr1g0314701 RchiOBHm_Chr1g0314711 RchiOBHm_Chr1g0314741 RchiOBHm_Chr1g0327611 RchiOBHm_Chr1g0333931 RchiOBHm_Chr1g0334091 RchiOBHm_Chr1g0334101 RchiOBHm_Chr2g0144731 RchiOBHm_Chr2g0144751 RchiOBHm_Chr3g0451471 RchiOBHm_Chr3g0451481 RchiOBHm_Chr3g0451521 RchiOBHm_Chr3g0451541 RchiOBHm_Chr3g0451581 RchiOBHm_Chr3g0451641 RchiOBHm_Chr3g0451661 RchiOBHm_Chr3g0451671 RchiOBHm_Chr3g0484861 RchiOBHm_Chr5g0013861 RchiOBHm_Chr5g0013871 RchiOBHm_Chr5g0013881 RchiOBHm_Chr5g0013921 RchiOBHm_Chr5g0013931 RchiOBHm_Chr5g0026001 RchiOBHm_Chr5g0026101 RchiOBHm_Chr5g0026421 RchiOBHm_Chr5g0066271 RchiOBHm_Chr6g0287411 RchiOBHm_Chr6g0287421 RchiOBHm_Chr6g0287561 RchiOBHm_Chr6g0287581 RchiOBHm_Chr6g0287591 RchiOBHm_Chr6g0296221 RchiOBHm_Chr7g0237431
rosa_laevigata RLG00000001003 RLG00000011679 RLG00000011716 RLG00000012483 RLG00000012484 RLG00000013019 RLG00000015060 RLG00000020104 RLG00000020105 RLG00000020106 RLG00000020107 RLG00000020108 RLG00000020109 RLG00000023202 RLG00000024217 RLG00000025656 RLG00000025657 RLG00000026224 RLG00000029504 RLG00000029507 RLG00000029508 RLG00000029509 RLG00000029980 RLG00000030042 RLG00000032050 RLG00000032051 RLG00000032052 RLG00000032891 RLG00000032896 RLG00000032900 RLG00000032901 RLG00000032930 RLG00000032931 RLG00000035381 RLG00000035383 RLG00000035847
rosa_multiflora Rmu_co7983036.1_g000001 Rmu_co8026080.1_g000001 Rmu_co8242645.1_g000001 Rmu_co8396077.1_g000001 Rmu_co8406137.1_g000001 Rmu_co8420673.1_g000001 Rmu_co8458221.1_g000001 Rmu_sc0000026.1_g000007 Rmu_sc0000795.1_g000054 Rmu_sc0000997.1_g000011 Rmu_sc0001689.1_g000014 Rmu_sc0001802.1_g000009 Rmu_sc0002354.1_g000053 Rmu_sc0002354.1_g000055 Rmu_sc0002806.1_g000016 Rmu_sc0002833.1_g000022 Rmu_sc0002843.1_g000009 Rmu_sc0002923.1_g000021 Rmu_sc0003020.1_g000017 Rmu_sc0003598.1_g000012 Rmu_sc0003598.1_g000013 Rmu_sc0003598.1_g000014 Rmu_sc0003598.1_g000015 Rmu_sc0003690.1_g000001 Rmu_sc0004708.1_g000014 Rmu_sc0004924.1_g000009 Rmu_sc0004924.1_g000018 Rmu_sc0004924.1_g000022 Rmu_sc0004924.1_g000026 Rmu_sc0004924.1_g000032 Rmu_sc0004924.1_g000033 Rmu_sc0004924.1_g000037 Rmu_sc0004924.1_g000039 Rmu_sc0004974.1_g000006 Rmu_sc0005581.1_g000001 Rmu_sc0005581.1_g000010 Rmu_sc0005803.1_g000021 Rmu_sc0006653.1_g000009 Rmu_sc0007029.1_g000008 Rmu_sc0009360.1_g000007 Rmu_sc0009360.1_g000012 Rmu_sc0009360.1_g000013 Rmu_sc0009360.1_g000015 Rmu_sc0009360.1_g000021 Rmu_sc0009360.1_g000033 Rmu_sc0009360.1_g000048 Rmu_sc0009360.1_g000049 Rmu_sc0009360.1_g000051 Rmu_sc0011096.1_g000005 Rmu_sc0016584.1_g000002 Rmu_sc0020815.1_g000001 Rmu_sc0020815.1_g000002 Rmu_sc0025510.1_g000001 Rmu_sc0026263.1_g000003 Rmu_sc0029456.1_g000001 Rmu_sc0029457.1_g000001 Rmu_sc0029568.1_g000001 Rmu_sc0032214.1_g000001 Rmu_sc0041321.1_g000001 Rmu_sc0042928.1_g000001 Rmu_ssc0000042.1_g000010 Rmu_ssc0000042.1_g000019 Rmu_ssc0000042.1_g000020 Rmu_ssc0000126.1_g000058
rosa_roxburghii Rroxscaffold_164G00436360 Rroxscaffold_164G00436400 Rroxscaffold_164G00436430 Rroxscaffold_164G00436440 Rroxscaffold_164G00436470 Rroxscaffold_1G00052970 Rroxscaffold_1G00062790 Rroxscaffold_1G00062820 Rroxscaffold_2G00100990 Rroxscaffold_2G00101010 Rroxscaffold_3G00224210 Rroxscaffold_4G00297610 Rroxscaffold_4G00317070 Rroxscaffold_4G00317100 Rroxscaffold_4G00317110 Rroxscaffold_4G00317120 Rroxscaffold_4G00322520 Rroxscaffold_4G00322530 Rroxscaffold_4G00323280 Rroxscaffold_4G00331920 Rroxscaffold_6G00410350 Rroxscaffold_6G00428880 Rroxscaffold_6G00428910 Rroxscaffold_6G00428930 Rroxscaffold_7G00171360 Rroxscaffold_7G00171730 Rroxscaffold_7G00178330 Rroxscaffold_7G00178730 Rroxscaffold_7G00180960 Rroxscaffold_7G00181370
rosa_rugosa Rorug01G0001400 Rorug01G0001500 Rorug01G0001600 Rorug01G0001700 Rorug01G0068600 Rorug01G0068700 Rorug02G0389400 Rorug02G0389500 Rorug02G0634000 Rorug02G0634300 Rorug02G0634600 Rorug02G0634800 Rorug02G0634900 Rorug02G0634900 Rorug02G0635000 Rorug02G0635100 Rorug02G0635200 Rorug02G0635300 Rorug02G0635400 Rorug03G0213900 Rorug05G0012800 Rorug05G0012900 Rorug05G0013100 Rorug05G0013300 Rorug05G0090300 Rorug05G0090400 Rorug05G0092900 Rorug05G0093000 Rorug05G0093100 Rorug06G0189200 Rorug06G0189200 Rorug06G0189300 Rorug06G0189400 Rorug06G0259500 Rorug07G0303200 Rorug07G0303300.1
rosa_samantha Rh1AG010600 Rh1AG010900 Rh1AG011800 Rh1AG012100 Rh1AG012500 Rh1AG081000 Rh1AG085900 Rh1AG135300 Rh1AG135400 Rh1AG135500 Rh1AG135700 Rh1AG135800 Rh1AG136400 Rh1BG003400 Rh1BG003700 Rh1BG068500 Rh1BG103400 Rh1BG103500 Rh1BG103600 Rh1CG128600 Rh1CG128800 Rh1DG005800 Rh1DG090100 Rh1DG140800 Rh1DG140900 Rh1DG141100 Rh1DG141200 Rh1DG141500 Rh2AG441200 Rh2BG451500 Rh2BG451800 Rh2BG451900 Rh2CG428500 Rh2DG461500 Rh3AG037000 Rh3AG037100 Rh3AG037200 Rh3BG037600 Rh3BG037700 Rh3BG037800 Rh3BG038100 Rh3BG299500 Rh3BG299800 Rh3BG299900 Rh3CG036200 Rh3CG036400 Rh3CG036500 Rh3CG036800 Rh3CG297200 Rh3DG037100 Rh3DG037200 Rh3DG037400 Rh3DG293200 Rh5BG103800 Rh5BG104100 Rh5BG104200 Rh5BG180100 Rh5BG180200 Rh5BG183000 Rh5BG451600 Rh5CG115600 Rh5CG115700 Rh5CG115900 Rh5CG116100 Rh5CG198800 Rh5CG199300 Rh5CG202400 Rh5DG102100 Rh5DG102200 Rh5DG102300 Rh5DG102600 Rh5DG102800 Rh5DG181100 Rh5DG181300 Rh5DG181800 Rh5DG184900 Rh5DG185100 Rh6AG256000 Rh6AG299200 Rh6AG299300 Rh6AG300400 Rh6AG371800 Rh6BG383300 Rh6CG303400 Rh6CG314400 Rh6CG385000 Rh6DG297800 Rh6DG372300 Rh7BG046900 Rh7BG312300 Rh7BG312500 Rh7BG430400
rosa_wichuraiana Rw0G009620 Rw0G015730 Rw1G000490 Rw1G006410 Rw1G006700 Rw1G011270 Rw1G011280 Rw1G011310 Rw2G036080 Rw3G002740 Rw3G002750 Rw3G002760 Rw3G002770 Rw3G023580 Rw5G009360 Rw5G009370 Rw5G009380 Rw5G009390 Rw5G009400 Rw5G016550 Rw5G016890 Rw5G016910 Rw5G040760 Rw6G022190 Rw6G025910 Rw6G032400 Rw6G032690 Rw6G032790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 906
Acc36I ACCTGC 1 cut(s) 190
AccB1I GGYRCC 1 cut(s) 1744
AccI GTMKAC 1 cut(s) 1356
AciI CCGC 1 cut(s) 34
AclWI GGATC 3 cut(s) 983, 996, 1238
AcoI YGGCCR 2 cut(s) 426, 1257
AcsI RAATTY 3 cut(s) 1339, 1513, 1889
AcuI CTGAAG 1 cut(s) 1835
AcvI CACGTG 1 cut(s) 432
AcyI GRCGYC 1 cut(s) 903
AdeI CACNNNGTG 1 cut(s) 258
AfaI GTAC 2 cut(s) 710, 945
AfiI CCNNNNNNNGG 1 cut(s) 40
AflII CTTAAG 1 cut(s) 1018
AflIII ACRYGT 1 cut(s) 310
AjnI CCWGG 4 cut(s) 75, 868, 1172, 1254
AleI CACNNNNGTG 1 cut(s) 894
AluBI AGCT 8 cut(s) 443, 604, 815, 998, 1162, 1273, 1452, 1501
AluI AGCT 8 cut(s) 443, 604, 815, 998, 1162, 1273, 1452, 1501
Alw26I GTCTC 5 cut(s) 368, 1183, 1721, 1823, 1849
AlwI GGATC 3 cut(s) 983, 996, 1238
AoxI GGCC 3 cut(s) 426, 1204, 1257
ApeKI GCWGC 1 cut(s) 815
ApoI RAATTY 3 cut(s) 1339, 1513, 1889
AspA2I CCTAGG 1 cut(s) 1378
AspLEI GCGC 1 cut(s) 354
AspS9I GGNCC 2 cut(s) 90, 179
AsuC2I CCSGG 1 cut(s) 848
AsuHPI GGTGA 1 cut(s) 908
AsuII TTCGAA 1 cut(s) 599
AvaII GGWCC 2 cut(s) 90, 179
AvrII CCTAGG 1 cut(s) 1378
BalI TGGCCA 1 cut(s) 428
BamHI GGATCC 1 cut(s) 988
BanI GGYRCC 1 cut(s) 1744
BanII GRGCYC 1 cut(s) 1779
BbrPI CACGTG 1 cut(s) 432
BbsI GAAGAC 1 cut(s) 495
BbvI GCAGC 1 cut(s) 802
BccI CCATC 6 cut(s) 111, 349, 719, 1138, 1558, 1618
BceAI ACGGC 1 cut(s) 454
BciT130I CCWGG 4 cut(s) 77, 870, 1174, 1256
BclI TGATCA 2 cut(s) 222, 477
BcnI CCSGG 1 cut(s) 848
BcoDI GTCTC 5 cut(s) 368, 1183, 1721, 1823, 1849
BfaI CTAG 3 cut(s) 455, 1067, 1379
BfmI CTRYAG 3 cut(s) 1315, 1590, 1920
BfrI CTTAAG 1 cut(s) 1018
BfuAI ACCTGC 1 cut(s) 190
BisI GCNGC 1 cut(s) 816
BlnI CCTAGG 1 cut(s) 1378
BlsI GCNGC 1 cut(s) 817
Bme1390I CCNGG 5 cut(s) 77, 848, 870, 1174, 1256
Bme18I GGWCC 2 cut(s) 90, 179
BmgT120I GGNCC 2 cut(s) 90, 179
BmiI GGNNCC 3 cut(s) 990, 1746, 1906
BmrFI CCNGG 5 cut(s) 77, 848, 870, 1174, 1256
BmrI ACTGGG 1 cut(s) 1782
BmsI GCATC 4 cut(s) 558, 787, 1072, 1646
BmuI ACTGGG 1 cut(s) 1782
BoxI GACNNNNGTC 1 cut(s) 906
BpiI GAAGAC 1 cut(s) 495
Bpu14I TTCGAA 1 cut(s) 599
BpuEI CTTGAG 3 cut(s) 179, 978, 1169
BpuMI CCSGG 1 cut(s) 848
Bsa29I ATCGAT 1 cut(s) 1233
BsaAI YACGTR 1 cut(s) 432
BsaHI GRCGYC 1 cut(s) 903
BsaJI CCNNGG 4 cut(s) 847, 1172, 1378, 1688
BsaWI WCCGGW 1 cut(s) 362
BsaXI ACNNNNNCTCC 2 cut(s) 159, 189
Bsc4I CCNNNNNNNGG 1 cut(s) 40
Bse1I ACTGG 2 cut(s) 288, 1777
Bse3DI GCAATG 1 cut(s) 1804
BseBI CCWGG 4 cut(s) 77, 870, 1174, 1256
BseCI ATCGAT 1 cut(s) 1233
BseDI CCNNGG 4 cut(s) 847, 1172, 1378, 1688
BseGI GGATG 3 cut(s) 30, 1526, 1661
BseLI CCNNNNNNNGG 1 cut(s) 40
BseMI GCAATG 1 cut(s) 1804
BseMII CTCAG 2 cut(s) 76, 1784
BseNI ACTGG 2 cut(s) 288, 1777
BseRI GAGGAG 1 cut(s) 180
BseXI GCAGC 1 cut(s) 802
BsgI GTGCAG 1 cut(s) 1476
BshFI GGCC 3 cut(s) 428, 1206, 1259
BshNI GGYRCC 1 cut(s) 1744
BshVI ATCGAT 1 cut(s) 1233
BsiSI CCGG 2 cut(s) 363, 847
BslI CCNNNNNNNGG 1 cut(s) 40
BsmAI GTCTC 5 cut(s) 368, 1183, 1721, 1823, 1849
BsmI GAATGC 1 cut(s) 293
BsnI GGCC 3 cut(s) 428, 1206, 1259
Bsp119I TTCGAA 1 cut(s) 599
Bsp1286I GDGCHC 1 cut(s) 1779
Bsp1407I TGTACA 1 cut(s) 708
Bsp143I GATC 8 cut(s) 115, 222, 477, 634, 988, 1230, 1234, 1861
Bsp19I CCATGG 1 cut(s) 1688
BspACI CCGC 1 cut(s) 34
BspANI GGCC 3 cut(s) 428, 1206, 1259
BspCNI CTCAG 2 cut(s) 75, 1785
BspDI ATCGAT 1 cut(s) 1233
BspHI TCATGA 1 cut(s) 480
BspLI GGNNCC 3 cut(s) 990, 1746, 1906
BspMAI CTGCAG 2 cut(s) 1594, 1924
BspMI ACCTGC 1 cut(s) 190
BspPI GGATC 3 cut(s) 983, 996, 1238
BspQI GCTCTTC 1 cut(s) 858
BspT104I TTCGAA 1 cut(s) 599
BspT107I GGYRCC 1 cut(s) 1744
BspTI CTTAAG 1 cut(s) 1018
BsrDI GCAATG 1 cut(s) 1804
BsrGI TGTACA 1 cut(s) 708
BsrI ACTGG 2 cut(s) 288, 1777
BssECI CCNNGG 4 cut(s) 847, 1172, 1378, 1688
BssMI GATC 8 cut(s) 115, 222, 477, 634, 988, 1230, 1234, 1861
BssNAI GTATAC 1 cut(s) 1357
BssNI GRCGYC 1 cut(s) 903
BssT1I CCWWGG 2 cut(s) 1378, 1688
Bst1107I GTATAC 1 cut(s) 1357
Bst2UI CCWGG 4 cut(s) 77, 870, 1174, 1256
Bst4CI ACNGT 3 cut(s) 610, 979, 1744
Bst6I CTCTTC 4 cut(s) 16, 594, 858, 1854
BstACI GRCGYC 1 cut(s) 903
BstAFI CTTAAG 1 cut(s) 1018
BstAUI TGTACA 1 cut(s) 708
BstBAI YACGTR 1 cut(s) 432
BstBI TTCGAA 1 cut(s) 599
BstC8I GCNNGC 2 cut(s) 563, 1010
BstDEI CTNAG 5 cut(s) 62, 1034, 1238, 1573, 1793
BstDSI CCRYGG 1 cut(s) 1688
BstF5I GGATG 3 cut(s) 30, 1526, 1661
BstHHI GCGC 1 cut(s) 354
BstKTI GATC 8 cut(s) 118, 225, 480, 637, 991, 1233, 1237, 1864
BstMAI GTCTC 5 cut(s) 368, 1183, 1721, 1823, 1849
BstMBI GATC 8 cut(s) 115, 222, 477, 634, 988, 1230, 1234, 1861
BstMWI GCNNNNNNNGC 3 cut(s) 272, 957, 1168
BstNI CCWGG 4 cut(s) 77, 870, 1174, 1256
BstNSI RCATGY 2 cut(s) 314, 771
BstPAI GACNNNNGTC 1 cut(s) 906
BstSCI CCNGG 5 cut(s) 75, 846, 868, 1172, 1254
BstSFI CTRYAG 3 cut(s) 1315, 1590, 1920
BstV1I GCAGC 1 cut(s) 802
BstV2I GAAGAC 1 cut(s) 495
BstX2I RGATCY 1 cut(s) 988
BstXI CCANNNNNNTGG 1 cut(s) 1255
BstYI RGATCY 1 cut(s) 988
BstZ17I GTATAC 1 cut(s) 1357
Bsu15I ATCGAT 1 cut(s) 1233
BsuRI GGCC 3 cut(s) 428, 1206, 1259
BsuTUI ATCGAT 1 cut(s) 1233
BtgI CCRYGG 1 cut(s) 1688
BtsCI GGATG 3 cut(s) 30, 1526, 1661
BtsIMutI CAGTG 1 cut(s) 606
BveI ACCTGC 1 cut(s) 190
Cac8I GCNNGC 2 cut(s) 563, 1010
CciI TCATGA 1 cut(s) 480
CfoI GCGC 1 cut(s) 354
Cfr13I GGNCC 2 cut(s) 90, 179
ClaI ATCGAT 1 cut(s) 1233
Csp6I GTAC 2 cut(s) 709, 944
CviQI GTAC 2 cut(s) 709, 944
DdeI CTNAG 5 cut(s) 62, 1034, 1238, 1573, 1793
DpnI GATC 8 cut(s) 117, 224, 479, 636, 990, 1232, 1236, 1863
DpnII GATC 8 cut(s) 115, 222, 477, 634, 988, 1230, 1234, 1861
DraIII CACNNNGTG 1 cut(s) 258
EaeI YGGCCR 2 cut(s) 426, 1257
Eam1104I CTCTTC 4 cut(s) 16, 594, 858, 1854
EarI CTCTTC 4 cut(s) 16, 594, 858, 1854
EciI GGCGGA 1 cut(s) 23
Eco130I CCWWGG 2 cut(s) 1378, 1688
Eco24I GRGCYC 1 cut(s) 1779
Eco47I GGWCC 2 cut(s) 90, 179
Eco57I CTGAAG 1 cut(s) 1835
Eco72I CACGTG 1 cut(s) 432
EcoO109I RGGNCCY 1 cut(s) 90
EcoRII CCWGG 4 cut(s) 75, 868, 1172, 1254
EcoT14I CCWWGG 2 cut(s) 1378, 1688
EcoT38I GRGCYC 1 cut(s) 1779
ErhI CCWWGG 2 cut(s) 1378, 1688
FauNDI CATATG 1 cut(s) 1167
FbaI TGATCA 2 cut(s) 222, 477
FblI GTMKAC 1 cut(s) 1356
Fnu4HI GCNGC 1 cut(s) 816
FokI GGATG 3 cut(s) 17, 1533, 1668
FriOI GRGCYC 1 cut(s) 1779
Fsp4HI GCNGC 1 cut(s) 816
FspBI CTAG 3 cut(s) 455, 1067, 1379
GlaI GCGC 1 cut(s) 353
GluI GCNGC 1 cut(s) 816
HaeIII GGCC 3 cut(s) 428, 1206, 1259
HapII CCGG 2 cut(s) 363, 847
HhaI GCGC 1 cut(s) 354
Hin1I GRCGYC 1 cut(s) 903
Hin6I GCGC 1 cut(s) 352
HinP1I GCGC 1 cut(s) 352
HincII GTYRAC 2 cut(s) 973, 1789
HindII GTYRAC 2 cut(s) 973, 1789
HindIII AAGCTT 3 cut(s) 441, 996, 1499
HinfI GANTC 6 cut(s) 72, 206, 584, 1023, 1210, 1645
HpaI GTTAAC 1 cut(s) 973
HpaII CCGG 2 cut(s) 363, 847
HphI GGTGA 1 cut(s) 908
Hpy166II GTNNAC 7 cut(s) 709, 973, 1288, 1357, 1426, 1494, 1789
Hpy188I TCNGA 6 cut(s) 71, 120, 639, 1146, 1512, 1854
Hpy8I GTNNAC 7 cut(s) 709, 973, 1288, 1357, 1426, 1494, 1789
HpyAV CCTTC 7 cut(s) 400, 430, 707, 739, 1097, 1485, 1758
HpyCH4III ACNGT 3 cut(s) 610, 979, 1744
HpyCH4IV ACGT 3 cut(s) 431, 507, 903
HpyF10VI GCNNNNNNNGC 3 cut(s) 272, 957, 1168
HpyF3I CTNAG 5 cut(s) 62, 1034, 1238, 1573, 1793
HpySE526I ACGT 3 cut(s) 431, 507, 903
Hsp92I GRCGYC 1 cut(s) 903
HspAI GCGC 1 cut(s) 352
Ksp22I TGATCA 2 cut(s) 222, 477
KspAI GTTAAC 1 cut(s) 973
Kzo9I GATC 8 cut(s) 115, 222, 477, 634, 988, 1230, 1234, 1861
LguI GCTCTTC 1 cut(s) 858
LmnI GCTCC 1 cut(s) 1904
Lsp1109I GCAGC 1 cut(s) 802
LweI GCATC 4 cut(s) 558, 787, 1072, 1646
MaeI CTAG 3 cut(s) 455, 1067, 1379
MaeII ACGT 3 cut(s) 431, 507, 903
MaeIII GTNAC 2 cut(s) 1109, 1551
MalI GATC 8 cut(s) 117, 224, 479, 636, 990, 1232, 1236, 1863
MboI GATC 8 cut(s) 115, 222, 477, 634, 988, 1230, 1234, 1861
MflI RGATCY 1 cut(s) 988
MhlI GDGCHC 1 cut(s) 1779
MlsI TGGCCA 1 cut(s) 428
MluNI TGGCCA 1 cut(s) 428
MlyI GAGTC 2 cut(s) 81, 578
MmeI TCCRAC 3 cut(s) 157, 966, 1246
MnlI CCTC 7 cut(s) 19, 120, 158, 892, 1002, 1617, 1820
Mox20I TGGCCA 1 cut(s) 428
MscI TGGCCA 1 cut(s) 428
MseI TTAA 9 cut(s) 191, 731, 972, 1019, 1362, 1580, 1638, 1698, 1930
MslI CAYNNNNRTG 4 cut(s) 108, 894, 980, 1050
Msp20I TGGCCA 1 cut(s) 428
MspCI CTTAAG 1 cut(s) 1018
MspI CCGG 2 cut(s) 363, 847
MspR9I CCNGG 5 cut(s) 77, 848, 870, 1174, 1256
Mva1269I GAATGC 1 cut(s) 293
MvaI CCWGG 4 cut(s) 77, 870, 1174, 1256
MwoI GCNNNNNNNGC 3 cut(s) 272, 957, 1168
NciI CCSGG 1 cut(s) 848
NcoI CCATGG 1 cut(s) 1688
NdeI CATATG 1 cut(s) 1167
NdeII GATC 8 cut(s) 115, 222, 477, 634, 988, 1230, 1234, 1861
NlaIV GGNNCC 3 cut(s) 990, 1746, 1906
NspI RCATGY 2 cut(s) 314, 771
NspV TTCGAA 1 cut(s) 599
OliI CACNNNNGTG 1 cut(s) 894
PagI TCATGA 1 cut(s) 480
PciI ACATGT 1 cut(s) 310
PciSI GCTCTTC 1 cut(s) 858
PcsI WCGNNNNNNNCGW 1 cut(s) 1748
PctI GAATGC 1 cut(s) 293
PfeI GAWTC 4 cut(s) 206, 1023, 1210, 1645
PfoI TCCNGGA 1 cut(s) 75
PkrI GCNGC 1 cut(s) 817
PleI GAGTC 2 cut(s) 80, 578
PmaCI CACGTG 1 cut(s) 432
PmlI CACGTG 1 cut(s) 432
PpsI GAGTC 2 cut(s) 80, 578
Ppu21I YACGTR 1 cut(s) 432
PpuMI RGGWCCY 1 cut(s) 90
PscI ACATGT 1 cut(s) 310
PshAI GACNNNNGTC 1 cut(s) 906
Psp5II RGGWCCY 1 cut(s) 90
Psp6I CCWGG 4 cut(s) 75, 868, 1172, 1254
PspCI CACGTG 1 cut(s) 432
PspGI CCWGG 4 cut(s) 75, 868, 1172, 1254
PspN4I GGNNCC 3 cut(s) 990, 1746, 1906
PspPI GGNCC 2 cut(s) 90, 179
PspPPI RGGWCCY 1 cut(s) 90
PstI CTGCAG 2 cut(s) 1594, 1924
PsuI RGATCY 1 cut(s) 988
RsaI GTAC 2 cut(s) 710, 945
RsaNI GTAC 2 cut(s) 709, 944
RseI CAYNNNNRTG 4 cut(s) 108, 894, 980, 1050
SapI GCTCTTC 1 cut(s) 858
SaqAI TTAA 9 cut(s) 191, 731, 972, 1019, 1362, 1580, 1638, 1698, 1930
SatI GCNGC 1 cut(s) 816
Sau3AI GATC 8 cut(s) 115, 222, 477, 634, 988, 1230, 1234, 1861
Sau96I GGNCC 2 cut(s) 90, 179
SchI GAGTC 2 cut(s) 81, 578
ScrFI CCNGG 5 cut(s) 77, 848, 870, 1174, 1256
SduI GDGCHC 1 cut(s) 1779
SfaNI GCATC 4 cut(s) 558, 787, 1072, 1646
SfcI CTRYAG 3 cut(s) 1315, 1590, 1920
SfuI TTCGAA 1 cut(s) 599
SinI GGWCC 2 cut(s) 90, 179
SmiMI CAYNNNNRTG 4 cut(s) 108, 894, 980, 1050
SmlI CTYRAG 4 cut(s) 158, 993, 1018, 1184
SmoI CTYRAG 4 cut(s) 158, 993, 1018, 1184
SsiI CCGC 1 cut(s) 34
SspMI CTAG 3 cut(s) 455, 1067, 1379
StyD4I CCNGG 5 cut(s) 75, 846, 868, 1172, 1254
StyI CCWWGG 2 cut(s) 1378, 1688
TaaI ACNGT 3 cut(s) 610, 979, 1744
TaiI ACGT 3 cut(s) 434, 510, 906
TaqI TCGA 4 cut(s) 233, 599, 1233, 1679
TatI WGTACW 2 cut(s) 708, 943
TfiI GAWTC 4 cut(s) 206, 1023, 1210, 1645
Tru1I TTAA 9 cut(s) 191, 731, 972, 1019, 1362, 1580, 1638, 1698, 1930
Tru9I TTAA 9 cut(s) 191, 731, 972, 1019, 1362, 1580, 1638, 1698, 1930
TscAI CASTG 1 cut(s) 613
TseI GCWGC 1 cut(s) 815
TspDTI ATGAA 9 cut(s) 98, 186, 345, 408, 497, 1154, 1467, 1640, 1682
TspGWI ACGGA 2 cut(s) 431, 596
TspRI CASTG 1 cut(s) 613
Vha464I CTTAAG 1 cut(s) 1018
VpaK11BI GGWCC 2 cut(s) 90, 179
XapI RAATTY 3 cut(s) 1339, 1513, 1889
XbaI TCTAGA 1 cut(s) 1066
XceI RCATGY 2 cut(s) 314, 771
XcmI CCANNNNNNNNNTGG 1 cut(s) 259
XmaJI CCTAGG 1 cut(s) 1378
XmiI GTMKAC 1 cut(s) 1356
XspI CTAG 3 cut(s) 455, 1067, 1379
ZraI GACGTC 1 cut(s) 904
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.