RESISTANCE protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| TIR | PF01582 | 19 - 196 | 1.9e-57 | TIR domain |
| TIR_2 | PF13676 | 22 - 133 | 2.7e-16 | TIR domain |
| NB-ARC | PF00931 | 215 - 371 | 2.6e-16 | NB-ARC domain |
| WHD_ROQ1 | PF23282 | 446 - 515 | 2.3e-16 | Disease resistance protein Roq1-like, winged-helix domain |
| LRR_14 | PF23598 | 725 - 801 | 7.7e-07 | Leucine-rich repeat region |
| C-JID | PF20160 | 988 - 1121 | 6.1e-08 | C-JID domain |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1061 |
| AarI | CACCTGC | 2 cut(s) | 202, 1041 |
| Acc16I | TGCGCA | 1 cut(s) | 45 |
| Acc36I | ACCTGC | 3 cut(s) | 202, 1041, 2256 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 2289 |
| AccII | CGCG | 1 cut(s) | 1589 |
| AciI | CCGC | 6 cut(s) | 122, 1187, 1433, 1587, 1589, 2446 |
| AclI | AACGTT | 1 cut(s) | 412 |
| AclWI | GGATC | 5 cut(s) | 344, 848, 1051, 2391, 2826 |
| AcsI | RAATTY | 8 cut(s) | 1209, 1280, 1718, 2176, 2311, 2405, 2845, 2973 |
| AcuI | CTGAAG | 4 cut(s) | 1085, 1745, 3063, 3218 |
| AdeI | CACNNNGTG | 1 cut(s) | 3211 |
| AfaI | GTAC | 4 cut(s) | 429, 1176, 1585, 3224 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 373, 2289, 3214, 3238 |
| AflII | CTTAAG | 1 cut(s) | 2306 |
| AflIII | ACRYGT | 3 cut(s) | 358, 1461, 2604 |
| AjnI | CCWGG | 5 cut(s) | 973, 1561, 1909, 2464, 3207 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 933, 965 |
| Alw21I | GWGCWC | 3 cut(s) | 1244, 1788, 2553 |
| Alw26I | GTCTC | 3 cut(s) | 1470, 2228, 2279 |
| Alw44I | GTGCAC | 1 cut(s) | 1784 |
| AlwI | GGATC | 5 cut(s) | 344, 848, 1051, 2391, 2826 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 2559, 2786 |
| Ama87I | CYCGRG | 2 cut(s) | 608, 2962 |
| AoxI | GGCC | 6 cut(s) | 364, 1200, 1692, 1841, 1942, 3364 |
| ApaLI | GTGCAC | 1 cut(s) | 1784 |
| ApeKI | GCWGC | 8 cut(s) | 17, 386, 389, 1137, 1184, 1448, 1990, 2763 |
| ApoI | RAATTY | 8 cut(s) | 1209, 1280, 1718, 2176, 2311, 2405, 2845, 2973 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 2253, 2285 |
| Asp700I | GAANNNNTTC | 8 cut(s) | 639, 1098, 1280, 1635, 1775, 1812, 2091, 3153 |
| AspLEI | GCGC | 3 cut(s) | 46, 1572, 2709 |
| AspS9I | GGNCC | 4 cut(s) | 782, 971, 1201, 3246 |
| AsuHPI | GGTGA | 8 cut(s) | 95, 965, 1748, 3131, 3158, 3197, 3253, 3340 |
| AsuII | TTCGAA | 1 cut(s) | 2340 |
| AvaI | CYCGRG | 2 cut(s) | 608, 2962 |
| AvaII | GGWCC | 3 cut(s) | 782, 971, 3246 |
| AxyI | CCTNAGG | 1 cut(s) | 1689 |
| BaeGI | GKGCMC | 1 cut(s) | 1788 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 419, 452 |
| BanII | GRGCYC | 1 cut(s) | 2553 |
| BauI | CACGAG | 1 cut(s) | 888 |
| BbsI | GAAGAC | 3 cut(s) | 1768, 2523, 2783 |
| Bbv12I | GWGCWC | 3 cut(s) | 1244, 1788, 2553 |
| BbvCI | CCTCAGC | 1 cut(s) | 2678 |
| BbvI | GCAGC | 8 cut(s) | 4, 376, 398, 1124, 1171, 1460, 2002, 2750 |
| BccI | CCATC | 9 cut(s) | 125, 773, 859, 1430, 1521, 1876, 2042, 2666, 2739 |
| BceAI | ACGGC | 2 cut(s) | 1557, 3075 |
| BciT130I | CCWGG | 5 cut(s) | 975, 1563, 1911, 2466, 3209 |
| BciVI | GTATCC | 1 cut(s) | 1745 |
| BclI | TGATCA | 3 cut(s) | 955, 1147, 3403 |
| BcoDI | GTCTC | 3 cut(s) | 1470, 2228, 2279 |
| BfaI | CTAG | 6 cut(s) | 467, 999, 1082, 2334, 2546, 2741 |
| BfmI | CTRYAG | 3 cut(s) | 1034, 1138, 1881 |
| BfoI | RGCGCY | 2 cut(s) | 1573, 2710 |
| BfrI | CTTAAG | 1 cut(s) | 2306 |
| BfuAI | ACCTGC | 3 cut(s) | 202, 1041, 2256 |
| BfuI | GTATCC | 1 cut(s) | 1745 |
| BglII | AGATCT | 3 cut(s) | 1801, 2008, 2355 |
| BisI | GCNGC | 9 cut(s) | 18, 123, 387, 390, 1138, 1185, 1449, 1991, 2764 |
| BlsI | GCNGC | 9 cut(s) | 19, 124, 388, 391, 1139, 1186, 1450, 1992, 2765 |
| Bme1390I | CCNGG | 5 cut(s) | 975, 1563, 1911, 2466, 3209 |
| Bme18I | GGWCC | 3 cut(s) | 782, 971, 3246 |
| BmeT110I | CYCGRG | 2 cut(s) | 608, 2962 |
| BmgT120I | GGNCC | 4 cut(s) | 782, 971, 1201, 3246 |
| BmiI | GGNNCC | 2 cut(s) | 1219, 2364 |
| BmrFI | CCNGG | 5 cut(s) | 975, 1563, 1911, 2466, 3209 |
| BoxI | GACNNNNGTC | 1 cut(s) | 1599 |
| BpiI | GAAGAC | 3 cut(s) | 1768, 2523, 2783 |
| BpmI | CTGGAG | 2 cut(s) | 1907, 2399 |
| Bpu10I | CCTNAGC | 1 cut(s) | 2678 |
| Bpu14I | TTCGAA | 1 cut(s) | 2340 |
| BpuEI | CTTGAG | 3 cut(s) | 416, 544, 3255 |
| Bsa29I | ATCGAT | 1 cut(s) | 1971 |
| BsaBI | GATNNNNATC | 5 cut(s) | 1008, 2904, 3017, 3201, 3405 |
| BsaJI | CCNNGG | 7 cut(s) | 266, 1197, 1587, 1766, 1952, 2465, 3361 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 373, 2289, 3214, 3238 |
| Bse1I | ACTGG | 2 cut(s) | 108, 2329 |
| Bse21I | CCTNAGG | 1 cut(s) | 1689 |
| Bse8I | GATNNNNATC | 5 cut(s) | 1008, 2904, 3017, 3201, 3405 |
| BseBI | CCWGG | 5 cut(s) | 975, 1563, 1911, 2466, 3209 |
| BseCI | ATCGAT | 1 cut(s) | 1971 |
| BseDI | CCNNGG | 7 cut(s) | 266, 1197, 1587, 1766, 1952, 2465, 3361 |
| BseJI | GATNNNNATC | 5 cut(s) | 1008, 2904, 3017, 3201, 3405 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 373, 2289, 3214, 3238 |
| BseMII | CTCAG | 8 cut(s) | 1676, 1703, 1849, 1887, 1990, 2343, 2566, 2669 |
| BseNI | ACTGG | 2 cut(s) | 108, 2329 |
| BseRI | GAGGAG | 4 cut(s) | 24, 27, 192, 1677 |
| BseSI | GKGCMC | 1 cut(s) | 1788 |
| BseXI | GCAGC | 8 cut(s) | 4, 376, 398, 1124, 1171, 1460, 2002, 2750 |
| BsgI | GTGCAG | 2 cut(s) | 308, 2784 |
| Bsh1236I | CGCG | 1 cut(s) | 1589 |
| BshFI | GGCC | 6 cut(s) | 366, 1202, 1694, 1843, 1944, 3366 |
| BshVI | ATCGAT | 1 cut(s) | 1971 |
| BsiHKAI | GWGCWC | 3 cut(s) | 1244, 1788, 2553 |
| BsiHKCI | CYCGRG | 2 cut(s) | 608, 2962 |
| BslFI | GGGAC | 2 cut(s) | 2200, 2474 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 373, 2289, 3214, 3238 |
| BsmAI | GTCTC | 3 cut(s) | 1470, 2228, 2279 |
| BsmFI | GGGAC | 2 cut(s) | 2200, 2474 |
| BsmI | GAATGC | 3 cut(s) | 305, 2591, 2881 |
| BsnI | GGCC | 6 cut(s) | 366, 1202, 1694, 1843, 1944, 3366 |
| BsoBI | CYCGRG | 2 cut(s) | 608, 2962 |
| Bsp119I | TTCGAA | 1 cut(s) | 2340 |
| Bsp1286I | GDGCHC | 3 cut(s) | 1244, 1788, 2553 |
| Bsp19I | CCATGG | 1 cut(s) | 266 |
| BspACI | CCGC | 6 cut(s) | 122, 1187, 1433, 1587, 1589, 2446 |
| BspANI | GGCC | 6 cut(s) | 366, 1202, 1694, 1843, 1944, 3366 |
| BspCNI | CTCAG | 8 cut(s) | 1675, 1702, 1848, 1888, 1989, 2344, 2565, 2670 |
| BspDI | ATCGAT | 1 cut(s) | 1971 |
| BspFNI | CGCG | 1 cut(s) | 1589 |
| BspHI | TCATGA | 1 cut(s) | 1087 |
| BspLI | GGNNCC | 2 cut(s) | 1219, 2364 |
| BspMAI | CTGCAG | 3 cut(s) | 1038, 1142, 1885 |
| BspMI | ACCTGC | 3 cut(s) | 202, 1041, 2256 |
| BspPI | GGATC | 5 cut(s) | 344, 848, 1051, 2391, 2826 |
| BspQI | GCTCTTC | 1 cut(s) | 1112 |
| BspT104I | TTCGAA | 1 cut(s) | 2340 |
| BspTI | CTTAAG | 1 cut(s) | 2306 |
| BsrI | ACTGG | 2 cut(s) | 108, 2329 |
| BssECI | CCNNGG | 7 cut(s) | 266, 1197, 1587, 1766, 1952, 2465, 3361 |
| BssSI | CACGAG | 1 cut(s) | 888 |
| BssT1I | CCWWGG | 4 cut(s) | 266, 1197, 1952, 3361 |
| Bst2BI | CACGAG | 1 cut(s) | 888 |
| Bst2UI | CCWGG | 5 cut(s) | 975, 1563, 1911, 2466, 3209 |
| Bst4CI | ACNGT | 4 cut(s) | 655, 1490, 2697, 2782 |
| Bst6I | CTCTTC | 1 cut(s) | 1112 |
| BstAFI | CTTAAG | 1 cut(s) | 2306 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1033 |
| BstBI | TTCGAA | 1 cut(s) | 2340 |
| BstC8I | GCNNGC | 5 cut(s) | 48, 556, 1841, 1845, 2705 |
| BstDSI | CCRYGG | 2 cut(s) | 266, 1587 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 3236 |
| BstFNI | CGCG | 1 cut(s) | 1589 |
| BstH2I | RGCGCY | 2 cut(s) | 1573, 2710 |
| BstHHI | GCGC | 3 cut(s) | 46, 1572, 2709 |
| BstMAI | GTCTC | 3 cut(s) | 1470, 2228, 2279 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 492, 555, 1033, 1567, 1576, 1906, 2595, 3272 |
| BstNI | CCWGG | 5 cut(s) | 975, 1563, 1911, 2466, 3209 |
| BstNSI | RCATGY | 5 cut(s) | 50, 362, 558, 1422, 1465 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 1599 |
| BstSCI | CCNGG | 5 cut(s) | 973, 1561, 1909, 2464, 3207 |
| BstSFI | CTRYAG | 3 cut(s) | 1034, 1138, 1881 |
| BstSLI | GKGCMC | 1 cut(s) | 1788 |
| BstUI | CGCG | 1 cut(s) | 1589 |
| BstV1I | GCAGC | 8 cut(s) | 4, 376, 398, 1124, 1171, 1460, 2002, 2750 |
| BstV2I | GAAGAC | 3 cut(s) | 1768, 2523, 2783 |
| BstX2I | RGATCY | 5 cut(s) | 349, 1801, 2008, 2355, 2383 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1993 |
| BstYI | RGATCY | 5 cut(s) | 349, 1801, 2008, 2355, 2383 |
| Bsu15I | ATCGAT | 1 cut(s) | 1971 |
| Bsu36I | CCTNAGG | 1 cut(s) | 1689 |
| BsuI | GTATCC | 1 cut(s) | 1745 |
| BsuRI | GGCC | 6 cut(s) | 366, 1202, 1694, 1843, 1944, 3366 |
| BsuTUI | ATCGAT | 1 cut(s) | 1971 |
| BtgI | CCRYGG | 2 cut(s) | 266, 1587 |
| BtsI | GCAGTG | 2 cut(s) | 1402, 2557 |
| BtsIMutI | CAGTG | 6 cut(s) | 651, 1402, 1893, 1984, 2557, 2787 |
| BveI | ACCTGC | 3 cut(s) | 202, 1041, 2256 |
| Cac8I | GCNNGC | 5 cut(s) | 48, 556, 1841, 1845, 2705 |
| CaiI | CAGNNNCTG | 2 cut(s) | 2559, 2786 |
| CciI | TCATGA | 1 cut(s) | 1087 |
| CfoI | GCGC | 3 cut(s) | 46, 1572, 2709 |
| Cfr13I | GGNCC | 4 cut(s) | 782, 971, 1201, 3246 |
| Cfr42I | CCGCGG | 1 cut(s) | 1590 |
| ClaI | ATCGAT | 1 cut(s) | 1971 |
| CseI | GACGC | 1 cut(s) | 2108 |
| CsiI | ACCWGGT | 1 cut(s) | 3207 |
| Csp6I | GTAC | 4 cut(s) | 428, 1175, 1584, 3223 |
| CspCI | CAANNNNNGTGG | 4 cut(s) | 2967, 3002, 3087, 3122 |
| CviQI | GTAC | 4 cut(s) | 428, 1175, 1584, 3223 |
| DraI | TTTAAA | 2 cut(s) | 570, 1792 |
| DraIII | CACNNNGTG | 1 cut(s) | 3211 |
| Eam1104I | CTCTTC | 1 cut(s) | 1112 |
| EarI | CTCTTC | 1 cut(s) | 1112 |
| EciI | GGCGGA | 1 cut(s) | 2461 |
| Ecl136II | GAGCTC | 1 cut(s) | 2551 |
| Eco130I | CCWWGG | 4 cut(s) | 266, 1197, 1952, 3361 |
| Eco147I | AGGCCT | 1 cut(s) | 1694 |
| Eco24I | GRGCYC | 1 cut(s) | 2553 |
| Eco32I | GATATC | 1 cut(s) | 3019 |
| Eco47I | GGWCC | 3 cut(s) | 782, 971, 3246 |
| Eco53kI | GAGCTC | 1 cut(s) | 2551 |
| Eco57I | CTGAAG | 4 cut(s) | 1085, 1745, 3063, 3218 |
| Eco81I | CCTNAGG | 1 cut(s) | 1689 |
| Eco88I | CYCGRG | 2 cut(s) | 608, 2962 |
| EcoICRI | GAGCTC | 1 cut(s) | 2551 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 3236 |
| EcoRII | CCWGG | 5 cut(s) | 973, 1561, 1909, 2464, 3207 |
| EcoRV | GATATC | 1 cut(s) | 3019 |
| EcoT14I | CCWWGG | 4 cut(s) | 266, 1197, 1952, 3361 |
| EcoT22I | ATGCAT | 6 cut(s) | 626, 1011, 1330, 1420, 1506, 2591 |
| EcoT38I | GRGCYC | 1 cut(s) | 2553 |
| ErhI | CCWWGG | 4 cut(s) | 266, 1197, 1952, 3361 |
| FaqI | GGGAC | 2 cut(s) | 2200, 2474 |
| FauI | CCCGC | 1 cut(s) | 1180 |
| FbaI | TGATCA | 3 cut(s) | 955, 1147, 3403 |
| Fnu4HI | GCNGC | 9 cut(s) | 18, 123, 387, 390, 1138, 1185, 1449, 1991, 2764 |
| FriOI | GRGCYC | 1 cut(s) | 2553 |
| Fsp4HI | GCNGC | 9 cut(s) | 18, 123, 387, 390, 1138, 1185, 1449, 1991, 2764 |
| FspBI | CTAG | 6 cut(s) | 467, 999, 1082, 2334, 2546, 2741 |
| FspI | TGCGCA | 1 cut(s) | 45 |
| GlaI | GCGC | 3 cut(s) | 45, 1571, 2708 |
| GluI | GCNGC | 9 cut(s) | 18, 123, 387, 390, 1138, 1185, 1449, 1991, 2764 |
| GsuI | CTGGAG | 2 cut(s) | 1907, 2399 |
| HaeII | RGCGCY | 2 cut(s) | 1573, 2710 |
| HaeIII | GGCC | 6 cut(s) | 366, 1202, 1694, 1843, 1944, 3366 |
| HgaI | GACGC | 1 cut(s) | 2108 |
| HhaI | GCGC | 3 cut(s) | 46, 1572, 2709 |
| Hin6I | GCGC | 3 cut(s) | 44, 1570, 2707 |
| HinP1I | GCGC | 3 cut(s) | 44, 1570, 2707 |
| HincII | GTYRAC | 2 cut(s) | 1459, 3085 |
| HindII | GTYRAC | 2 cut(s) | 1459, 3085 |
| HindIII | AAGCTT | 5 cut(s) | 224, 735, 2099, 2476, 3420 |
| HphI | GGTGA | 8 cut(s) | 95, 965, 1748, 3131, 3158, 3197, 3253, 3340 |
| Hpy166II | GTNNAC | 7 cut(s) | 1459, 1584, 1786, 2026, 2793, 3085, 3249 |
| Hpy8I | GTNNAC | 7 cut(s) | 1459, 1584, 1786, 2026, 2793, 3085, 3249 |
| Hpy99I | CGWCG | 4 cut(s) | 1233, 2124, 2515, 2518 |
| HpyCH4III | ACNGT | 4 cut(s) | 655, 1490, 2697, 2782 |
| HpyCH4IV | ACGT | 4 cut(s) | 412, 2436, 2606, 3142 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 492, 555, 1033, 1567, 1576, 1906, 2595, 3272 |
| HpySE526I | ACGT | 4 cut(s) | 412, 2436, 2606, 3142 |
| HspAI | GCGC | 3 cut(s) | 44, 1570, 2707 |
| Ksp22I | TGATCA | 3 cut(s) | 955, 1147, 3403 |
| KspI | CCGCGG | 1 cut(s) | 1590 |
| LguI | GCTCTTC | 1 cut(s) | 1112 |
| LmnI | GCTCC | 2 cut(s) | 2362, 2643 |
| Lsp1109I | GCAGC | 8 cut(s) | 4, 376, 398, 1124, 1171, 1460, 2002, 2750 |
| MabI | ACCWGGT | 1 cut(s) | 3207 |
| MaeI | CTAG | 6 cut(s) | 467, 999, 1082, 2334, 2546, 2741 |
| MaeII | ACGT | 4 cut(s) | 412, 2436, 2606, 3142 |
| MaeIII | GTNAC | 8 cut(s) | 95, 243, 535, 928, 1490, 1979, 2460, 2555 |
| MfeI | CAATTG | 1 cut(s) | 3190 |
| MflI | RGATCY | 5 cut(s) | 349, 1801, 2008, 2355, 2383 |
| MhlI | GDGCHC | 3 cut(s) | 1244, 1788, 2553 |
| MlyI | GAGTC | 6 cut(s) | 620, 711, 1678, 1914, 1976, 2492 |
| MmeI | TCCRAC | 1 cut(s) | 562 |
| Mph1103I | ATGCAT | 6 cut(s) | 626, 1011, 1330, 1420, 1506, 2591 |
| MroXI | GAANNNNTTC | 8 cut(s) | 639, 1098, 1280, 1635, 1775, 1812, 2091, 3153 |
| MseI | TTAA | 7 cut(s) | 569, 1206, 1412, 1791, 1961, 2180, 2307 |
| MslI | CAYNNNNRTG | 5 cut(s) | 117, 619, 1116, 3288, 3411 |
| MspA1I | CMGCKG | 5 cut(s) | 389, 1137, 1589, 1839, 1993 |
| MspCI | CTTAAG | 1 cut(s) | 2306 |
| MspR9I | CCNGG | 5 cut(s) | 975, 1563, 1911, 2466, 3209 |
| MunI | CAATTG | 1 cut(s) | 3190 |
| Mva1269I | GAATGC | 3 cut(s) | 305, 2591, 2881 |
| MvaI | CCWGG | 5 cut(s) | 975, 1563, 1911, 2466, 3209 |
| MvnI | CGCG | 1 cut(s) | 1589 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 492, 555, 1033, 1567, 1576, 1906, 2595, 3272 |
| NcoI | CCATGG | 1 cut(s) | 266 |
| NlaIV | GGNNCC | 2 cut(s) | 1219, 2364 |
| NmeAIII | GCCGAG | 1 cut(s) | 2653 |
| NmuCI | GTSAC | 4 cut(s) | 243, 535, 1979, 2555 |
| NsbI | TGCGCA | 1 cut(s) | 45 |
| NsiI | ATGCAT | 6 cut(s) | 626, 1011, 1330, 1420, 1506, 2591 |
| NspI | RCATGY | 5 cut(s) | 50, 362, 558, 1422, 1465 |
| NspV | TTCGAA | 1 cut(s) | 2340 |
| PaeI | GCATGC | 2 cut(s) | 50, 558 |
| PaeR7I | CTCGAG | 1 cut(s) | 608 |
| PagI | TCATGA | 1 cut(s) | 1087 |
| PaqCI | CACCTGC | 2 cut(s) | 202, 1041 |
| PceI | AGGCCT | 1 cut(s) | 1694 |
| PciI | ACATGT | 2 cut(s) | 358, 1461 |
| PciSI | GCTCTTC | 1 cut(s) | 1112 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 1452 |
| PctI | GAATGC | 3 cut(s) | 305, 2591, 2881 |
| PdmI | GAANNNNTTC | 8 cut(s) | 639, 1098, 1280, 1635, 1775, 1812, 2091, 3153 |
| PflFI | GACNNNGTC | 1 cut(s) | 2782 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 2289 |
| PkrI | GCNGC | 9 cut(s) | 19, 124, 388, 391, 1139, 1186, 1450, 1992, 2765 |
| PleI | GAGTC | 6 cut(s) | 619, 711, 1678, 1914, 1976, 2491 |
| PpsI | GAGTC | 6 cut(s) | 619, 711, 1678, 1914, 1976, 2491 |
| PscI | ACATGT | 2 cut(s) | 358, 1461 |
| PshAI | GACNNNNGTC | 1 cut(s) | 1599 |
| PsiI | TTATAA | 1 cut(s) | 1061 |
| Psp124BI | GAGCTC | 1 cut(s) | 2553 |
| Psp1406I | AACGTT | 1 cut(s) | 412 |
| Psp6I | CCWGG | 5 cut(s) | 973, 1561, 1909, 2464, 3207 |
| PspGI | CCWGG | 5 cut(s) | 973, 1561, 1909, 2464, 3207 |
| PspN4I | GGNNCC | 2 cut(s) | 1219, 2364 |
| PspPI | GGNCC | 4 cut(s) | 782, 971, 1201, 3246 |
| PspXI | VCTCGAGB | 1 cut(s) | 608 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 624, 656 |
| PstI | CTGCAG | 3 cut(s) | 1038, 1142, 1885 |
| PstNI | CAGNNNCTG | 2 cut(s) | 2559, 2786 |
| PsuI | RGATCY | 5 cut(s) | 349, 1801, 2008, 2355, 2383 |
| PsyI | GACNNNGTC | 1 cut(s) | 2782 |
| PvuII | CAGCTG | 4 cut(s) | 389, 1137, 1839, 1993 |
| RsaI | GTAC | 4 cut(s) | 429, 1176, 1585, 3224 |
| RsaNI | GTAC | 4 cut(s) | 428, 1175, 1584, 3223 |
| RseI | CAYNNNNRTG | 5 cut(s) | 117, 619, 1116, 3288, 3411 |
| SacI | GAGCTC | 1 cut(s) | 2553 |
| SacII | CCGCGG | 1 cut(s) | 1590 |
| SapI | GCTCTTC | 1 cut(s) | 1112 |
| SaqAI | TTAA | 7 cut(s) | 569, 1206, 1412, 1791, 1961, 2180, 2307 |
| SatI | GCNGC | 9 cut(s) | 18, 123, 387, 390, 1138, 1185, 1449, 1991, 2764 |
| Sau96I | GGNCC | 4 cut(s) | 782, 971, 1201, 3246 |
| SchI | GAGTC | 6 cut(s) | 620, 711, 1678, 1914, 1976, 2492 |
| ScrFI | CCNGG | 5 cut(s) | 975, 1563, 1911, 2466, 3209 |
| SduI | GDGCHC | 3 cut(s) | 1244, 1788, 2553 |
| SexAI | ACCWGGT | 1 cut(s) | 3207 |
| SfcI | CTRYAG | 3 cut(s) | 1034, 1138, 1881 |
| Sfr274I | CTCGAG | 1 cut(s) | 608 |
| Sfr303I | CCGCGG | 1 cut(s) | 1590 |
| SfuI | TTCGAA | 1 cut(s) | 2340 |
| SgrBI | CCGCGG | 1 cut(s) | 1590 |
| SinI | GGWCC | 3 cut(s) | 782, 971, 3246 |
| SlaI | CTCGAG | 1 cut(s) | 608 |
| SmiMI | CAYNNNNRTG | 5 cut(s) | 117, 619, 1116, 3288, 3411 |
| SmlI | CTYRAG | 5 cut(s) | 431, 559, 608, 2306, 3270 |
| SmoI | CTYRAG | 5 cut(s) | 431, 559, 608, 2306, 3270 |
| SphI | GCATGC | 2 cut(s) | 50, 558 |
| SseBI | AGGCCT | 1 cut(s) | 1694 |
| SsiI | CCGC | 6 cut(s) | 122, 1187, 1433, 1587, 1589, 2446 |
| SspI | AATATT | 1 cut(s) | 1862 |
| SspMI | CTAG | 6 cut(s) | 467, 999, 1082, 2334, 2546, 2741 |
| SstI | GAGCTC | 1 cut(s) | 2553 |
| StuI | AGGCCT | 1 cut(s) | 1694 |
| StyD4I | CCNGG | 5 cut(s) | 973, 1561, 1909, 2464, 3207 |
| StyI | CCWWGG | 4 cut(s) | 266, 1197, 1952, 3361 |
| TaaI | ACNGT | 4 cut(s) | 655, 1490, 2697, 2782 |
| TaiI | ACGT | 4 cut(s) | 415, 2439, 2609, 3145 |
| TaqI | TCGA | 9 cut(s) | 609, 1231, 1971, 2217, 2340, 2534, 2614, 3011, 3318 |
| TaqII | GACCGA | 3 cut(s) | 2506, 3062, 3387 |
| TauI | GCSGC | 1 cut(s) | 125 |
| Tru1I | TTAA | 7 cut(s) | 569, 1206, 1412, 1791, 1961, 2180, 2307 |
| Tru9I | TTAA | 7 cut(s) | 569, 1206, 1412, 1791, 1961, 2180, 2307 |
| TscAI | CASTG | 6 cut(s) | 658, 1402, 1900, 1984, 2564, 2787 |
| TseFI | GTSAC | 4 cut(s) | 243, 535, 1979, 2555 |
| TseI | GCWGC | 8 cut(s) | 17, 386, 389, 1137, 1184, 1448, 1990, 2763 |
| Tsp45I | GTSAC | 4 cut(s) | 243, 535, 1979, 2555 |
| TspDTI | ATGAA | 9 cut(s) | 420, 729, 816, 1107, 1356, 1401, 1557, 1953, 3272 |
| TspGWI | ACGGA | 3 cut(s) | 2499, 2824, 3014 |
| TspRI | CASTG | 6 cut(s) | 658, 1402, 1900, 1984, 2564, 2787 |
| Tth111I | GACNNNGTC | 1 cut(s) | 2782 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 2289 |
| Vha464I | CTTAAG | 1 cut(s) | 2306 |
| VneI | GTGCAC | 1 cut(s) | 1784 |
| VpaK11BI | GGWCC | 3 cut(s) | 782, 971, 3246 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 3236 |
| XapI | RAATTY | 8 cut(s) | 1209, 1280, 1718, 2176, 2311, 2405, 2845, 2973 |
| XceI | RCATGY | 5 cut(s) | 50, 362, 558, 1422, 1465 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 2286 |
| XhoI | CTCGAG | 1 cut(s) | 608 |
| XmnI | GAANNNNTTC | 8 cut(s) | 639, 1098, 1280, 1635, 1775, 1812, 2091, 3153 |
| XspI | CTAG | 6 cut(s) | 467, 999, 1082, 2334, 2546, 2741 |
| Zsp2I | ATGCAT | 6 cut(s) | 626, 1011, 1330, 1420, 1506, 2591 |