TMV resistance protein N-like
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| TIR | PF01582 | 15 - 203 | 6.2e-55 | TIR domain |
| TIR_2 | PF13676 | 18 - 121 | 2.4e-12 | TIR domain |
| NB-ARC | PF00931 | 204 - 373 | 3e-14 | NB-ARC domain |
| WHD_ROQ1 | PF23282 | 444 - 514 | 1.6e-21 | Disease resistance protein Roq1-like, winged-helix domain |
| C-JID | PF20160 | 1107 - 1265 | 9.8e-19 | C-JID domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 187 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 875 |
| AccBSI | CCGCTC | 2 cut(s) | 866, 2313 |
| AccI | GTMKAC | 1 cut(s) | 3883 |
| AccII | CGCG | 2 cut(s) | 2634, 2876 |
| AccIII | TCCGGA | 1 cut(s) | 663 |
| AciI | CCGC | 5 cut(s) | 6, 864, 1433, 2311, 2874 |
| AclI | AACGTT | 1 cut(s) | 418 |
| AclWI | GGATC | 7 cut(s) | 350, 886, 1482, 1665, 2232, 3162, 3222 |
| AcoI | YGGCCR | 2 cut(s) | 861, 1644 |
| AcsI | RAATTY | 7 cut(s) | 959, 1274, 1401, 2118, 2278, 3333, 3611 |
| AcuI | CTGAAG | 8 cut(s) | 1647, 1845, 2438, 2504, 2702, 2768, 3032, 3041 |
| AdeI | CACNNNGTG | 1 cut(s) | 659 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 875, 3146, 3743, 3744, 3747 |
| AflII | CTTAAG | 2 cut(s) | 839, 2246 |
| AflIII | ACRYGT | 1 cut(s) | 616 |
| AjiI | CACGTC | 2 cut(s) | 3102, 3284 |
| AjnI | CCWGG | 7 cut(s) | 597, 994, 1558, 1748, 1777, 1971, 2952 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 951, 983, 3786, 3818 |
| AleI | CACNNNNGTG | 1 cut(s) | 2025 |
| Alw21I | GWGCWC | 7 cut(s) | 447, 1101, 1971, 2556, 2622, 2820, 3226 |
| Alw44I | GTGCAC | 1 cut(s) | 3222 |
| AlwI | GGATC | 7 cut(s) | 350, 886, 1482, 1665, 2232, 3162, 3222 |
| Ama87I | CYCGRG | 2 cut(s) | 2009, 2204 |
| Aor13HI | TCCGGA | 1 cut(s) | 663 |
| ApaLI | GTGCAC | 1 cut(s) | 3222 |
| ApeKI | GCWGC | 6 cut(s) | 473, 756, 2262, 2307, 3061, 3096 |
| ApoI | RAATTY | 7 cut(s) | 959, 1274, 1401, 2118, 2278, 3333, 3611 |
| AseI | ATTAAT | 1 cut(s) | 3309 |
| Asp700I | GAANNNNTTC | 4 cut(s) | 89, 419, 1533, 3615 |
| AspLEI | GCGC | 6 cut(s) | 301, 1032, 2416, 2634, 2680, 2878 |
| AspS9I | GGNCC | 5 cut(s) | 595, 666, 916, 992, 1801 |
| AsuC2I | CCSGG | 2 cut(s) | 82, 3324 |
| AsuHPI | GGTGA | 7 cut(s) | 85, 332, 986, 1265, 2012, 3763, 3856 |
| AsuII | TTCGAA | 2 cut(s) | 747, 1698 |
| AvaI | CYCGRG | 2 cut(s) | 2009, 2204 |
| AvaII | GGWCC | 1 cut(s) | 666 |
| AxyI | CCTNAGG | 2 cut(s) | 36, 1797 |
| BaeGI | GKGCMC | 1 cut(s) | 3226 |
| BalI | TGGCCA | 1 cut(s) | 1646 |
| BanII | GRGCYC | 3 cut(s) | 1101, 1214, 2352 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 714, 746 |
| BbsI | GAAGAC | 5 cut(s) | 852, 1248, 1635, 2426, 2690 |
| Bbv12I | GWGCWC | 7 cut(s) | 447, 1101, 1971, 2556, 2622, 2820, 3226 |
| BbvI | GCAGC | 6 cut(s) | 485, 743, 2274, 2294, 3048, 3083 |
| BccI | CCATC | 6 cut(s) | 347, 367, 877, 1313, 1812, 3875 |
| BceAI | ACGGC | 2 cut(s) | 364, 1831 |
| BciT130I | CCWGG | 7 cut(s) | 599, 996, 1560, 1750, 1779, 1973, 2954 |
| BciVI | GTATCC | 1 cut(s) | 992 |
| BcnI | CCSGG | 2 cut(s) | 82, 3324 |
| BfaI | CTAG | 7 cut(s) | 1020, 1076, 1724, 2901, 3074, 3107, 3407 |
| BfrI | CTTAAG | 2 cut(s) | 839, 2246 |
| BfuAI | ACCTGC | 1 cut(s) | 187 |
| BfuI | GTATCC | 1 cut(s) | 992 |
| BglII | AGATCT | 2 cut(s) | 1726, 3705 |
| BisI | GCNGC | 8 cut(s) | 474, 757, 864, 2263, 2308, 2311, 3062, 3097 |
| BlsI | GCNGC | 8 cut(s) | 475, 758, 865, 2264, 2309, 2312, 3063, 3098 |
| BmcAI | AGTACT | 1 cut(s) | 837 |
| Bme1390I | CCNGG | 9 cut(s) | 82, 599, 996, 1560, 1750, 1779, 1973, 2954, 3324 |
| Bme18I | GGWCC | 1 cut(s) | 666 |
| BmeT110I | CYCGRG | 2 cut(s) | 2009, 2204 |
| BmgBI | CACGTC | 2 cut(s) | 3102, 3284 |
| BmgT120I | GGNCC | 5 cut(s) | 595, 666, 916, 992, 1801 |
| BmiI | GGNNCC | 2 cut(s) | 1213, 3834 |
| BmrFI | CCNGG | 9 cut(s) | 82, 599, 996, 1560, 1750, 1779, 1973, 2954, 3324 |
| BmrI | ACTGGG | 3 cut(s) | 1255, 3753, 3897 |
| BmuI | ACTGGG | 3 cut(s) | 1255, 3753, 3897 |
| BpiI | GAAGAC | 5 cut(s) | 852, 1248, 1635, 2426, 2690 |
| BplI | GAGNNNNNCTC | 8 cut(s) | 2420, 2452, 2684, 2716, 2882, 2914, 3101, 3133 |
| BpmI | CTGGAG | 9 cut(s) | 176, 1761, 2447, 2570, 2636, 2711, 2834, 2909, 2966 |
| Bpu10I | CCTNAGC | 1 cut(s) | 446 |
| Bpu14I | TTCGAA | 2 cut(s) | 747, 1698 |
| BpuEI | CTTGAG | 9 cut(s) | 1115, 1922, 2336, 2339, 2386, 2584, 2848, 2980, 3103 |
| BpuMI | CCSGG | 2 cut(s) | 82, 3324 |
| Bsa29I | ATCGAT | 1 cut(s) | 1950 |
| BsaAI | YACGTR | 3 cut(s) | 619, 1681, 2303 |
| BsaBI | GATNNNNATC | 1 cut(s) | 3377 |
| BsaI | GGTCTC | 1 cut(s) | 2205 |
| BsaJI | CCNNGG | 6 cut(s) | 994, 1470, 1749, 3065, 3415, 3663 |
| BsaWI | WCCGGW | 1 cut(s) | 663 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 875, 3146, 3743, 3744, 3747 |
| Bse1I | ACTGG | 9 cut(s) | 96, 159, 1250, 2430, 2694, 2892, 3084, 3748, 3903 |
| Bse21I | CCTNAGG | 2 cut(s) | 36, 1797 |
| Bse3DI | GCAATG | 1 cut(s) | 1225 |
| Bse8I | GATNNNNATC | 1 cut(s) | 3377 |
| BseAI | TCCGGA | 1 cut(s) | 663 |
| BseBI | CCWGG | 7 cut(s) | 599, 996, 1560, 1750, 1779, 1973, 2954 |
| BseCI | ATCGAT | 1 cut(s) | 1950 |
| BseDI | CCNNGG | 6 cut(s) | 994, 1470, 1749, 3065, 3415, 3663 |
| BseGI | GGATG | 5 cut(s) | 268, 1691, 3351, 3371, 3659 |
| BseJI | GATNNNNATC | 1 cut(s) | 3377 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 875, 3146, 3743, 3744, 3747 |
| BseMI | GCAATG | 1 cut(s) | 1225 |
| BseMII | CTCAG | 4 cut(s) | 50, 460, 1788, 1805 |
| BseNI | ACTGG | 9 cut(s) | 96, 159, 1250, 2430, 2694, 2892, 3084, 3748, 3903 |
| BseRI | GAGGAG | 2 cut(s) | 177, 3381 |
| BseSI | GKGCMC | 1 cut(s) | 3226 |
| BseXI | GCAGC | 6 cut(s) | 485, 743, 2274, 2294, 3048, 3083 |
| BseYI | CCCAGC | 1 cut(s) | 1178 |
| BsgI | GTGCAG | 3 cut(s) | 1940, 3082, 3120 |
| Bsh1236I | CGCG | 2 cut(s) | 2634, 2876 |
| BshVI | ATCGAT | 1 cut(s) | 1950 |
| BsiHKAI | GWGCWC | 7 cut(s) | 447, 1101, 1971, 2556, 2622, 2820, 3226 |
| BsiHKCI | CYCGRG | 2 cut(s) | 2009, 2204 |
| BsiSI | CCGG | 4 cut(s) | 82, 512, 664, 3323 |
| BsiWI | CGTACG | 1 cut(s) | 619 |
| BslFI | GGGAC | 2 cut(s) | 17, 3902 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 875, 3146, 3743, 3744, 3747 |
| BsmBI | CGTCTC | 2 cut(s) | 782, 3290 |
| BsmFI | GGGAC | 2 cut(s) | 17, 3902 |
| BsmI | GAATGC | 2 cut(s) | 290, 2016 |
| Bso31I | GGTCTC | 1 cut(s) | 2205 |
| BsoBI | CYCGRG | 2 cut(s) | 2009, 2204 |
| Bsp119I | TTCGAA | 2 cut(s) | 747, 1698 |
| Bsp1286I | GDGCHC | 9 cut(s) | 447, 1101, 1214, 1971, 2352, 2556, 2622, 2820, 3226 |
| Bsp13I | TCCGGA | 1 cut(s) | 663 |
| Bsp1407I | TGTACA | 1 cut(s) | 908 |
| Bsp19I | CCATGG | 1 cut(s) | 3065 |
| BspACI | CCGC | 5 cut(s) | 6, 864, 1433, 2311, 2874 |
| BspCNI | CTCAG | 4 cut(s) | 49, 459, 1789, 1806 |
| BspDI | ATCGAT | 1 cut(s) | 1950 |
| BspEI | TCCGGA | 1 cut(s) | 663 |
| BspFNI | CGCG | 2 cut(s) | 2634, 2876 |
| BspLI | GGNNCC | 2 cut(s) | 1213, 3834 |
| BspMI | ACCTGC | 1 cut(s) | 187 |
| BspPI | GGATC | 7 cut(s) | 350, 886, 1482, 1665, 2232, 3162, 3222 |
| BspQI | GCTCTTC | 1 cut(s) | 2235 |
| BspT104I | TTCGAA | 2 cut(s) | 747, 1698 |
| BspTI | CTTAAG | 2 cut(s) | 839, 2246 |
| BspTNI | GGTCTC | 1 cut(s) | 2205 |
| BsrBI | CCGCTC | 2 cut(s) | 866, 2313 |
| BsrDI | GCAATG | 1 cut(s) | 1225 |
| BsrGI | TGTACA | 1 cut(s) | 908 |
| BsrI | ACTGG | 9 cut(s) | 96, 159, 1250, 2430, 2694, 2892, 3084, 3748, 3903 |
| BssECI | CCNNGG | 6 cut(s) | 994, 1470, 1749, 3065, 3415, 3663 |
| BssT1I | CCWWGG | 1 cut(s) | 3065 |
| Bst2UI | CCWGG | 7 cut(s) | 599, 996, 1560, 1750, 1779, 1973, 2954 |
| Bst4CI | ACNGT | 6 cut(s) | 327, 670, 835, 908, 3115, 3176 |
| Bst6I | CTCTTC | 4 cut(s) | 742, 2235, 2480, 2744 |
| BstAFI | CTTAAG | 2 cut(s) | 839, 2246 |
| BstAUI | TGTACA | 1 cut(s) | 908 |
| BstBAI | YACGTR | 3 cut(s) | 619, 1681, 2303 |
| BstBI | TTCGAA | 2 cut(s) | 747, 1698 |
| BstC8I | GCNNGC | 5 cut(s) | 6, 754, 1034, 1584, 3922 |
| BstDSI | CCRYGG | 2 cut(s) | 1470, 3065 |
| BstF5I | GGATG | 5 cut(s) | 268, 1691, 3351, 3371, 3659 |
| BstFNI | CGCG | 2 cut(s) | 2634, 2876 |
| BstHHI | GCGC | 6 cut(s) | 301, 1032, 2416, 2634, 2680, 2878 |
| BstNI | CCWGG | 7 cut(s) | 599, 996, 1560, 1750, 1779, 1973, 2954 |
| BstNSI | RCATGY | 1 cut(s) | 1036 |
| BstSCI | CCNGG | 9 cut(s) | 80, 597, 994, 1558, 1748, 1777, 1971, 2952, 3322 |
| BstSLI | GKGCMC | 1 cut(s) | 3226 |
| BstUI | CGCG | 2 cut(s) | 2634, 2876 |
| BstV1I | GCAGC | 6 cut(s) | 485, 743, 2274, 2294, 3048, 3083 |
| BstV2I | GAAGAC | 5 cut(s) | 852, 1248, 1635, 2426, 2690 |
| BstX2I | RGATCY | 6 cut(s) | 355, 1474, 1657, 1726, 2224, 3705 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1654 |
| BstYI | RGATCY | 6 cut(s) | 355, 1474, 1657, 1726, 2224, 3705 |
| Bsu15I | ATCGAT | 1 cut(s) | 1950 |
| Bsu36I | CCTNAGG | 2 cut(s) | 36, 1797 |
| BsuI | GTATCC | 1 cut(s) | 992 |
| BsuTUI | ATCGAT | 1 cut(s) | 1950 |
| BtgI | CCRYGG | 2 cut(s) | 1470, 3065 |
| BtrI | CACGTC | 2 cut(s) | 3102, 3284 |
| BtsCI | GGATG | 5 cut(s) | 268, 1691, 3351, 3371, 3659 |
| BtsIMutI | CAGTG | 6 cut(s) | 205, 2423, 2687, 2885, 3741, 3910 |
| BveI | ACCTGC | 1 cut(s) | 187 |
| Cac8I | GCNNGC | 5 cut(s) | 6, 754, 1034, 1584, 3922 |
| CfoI | GCGC | 6 cut(s) | 301, 1032, 2416, 2634, 2680, 2878 |
| Cfr13I | GGNCC | 5 cut(s) | 595, 666, 916, 992, 1801 |
| ClaI | ATCGAT | 1 cut(s) | 1950 |
| CpoI | CGGWCCG | 1 cut(s) | 666 |
| CseI | GACGC | 1 cut(s) | 19 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1146, 1181 |
| CspI | CGGWCCG | 1 cut(s) | 666 |
| DraI | TTTAAA | 1 cut(s) | 1407 |
| DraIII | CACNNNGTG | 1 cut(s) | 659 |
| EaeI | YGGCCR | 2 cut(s) | 861, 1644 |
| Eam1104I | CTCTTC | 4 cut(s) | 742, 2235, 2480, 2744 |
| EarI | CTCTTC | 4 cut(s) | 742, 2235, 2480, 2744 |
| Ecl136II | GAGCTC | 1 cut(s) | 1099 |
| Eco130I | CCWWGG | 1 cut(s) | 3065 |
| Eco147I | AGGCCT | 2 cut(s) | 3543, 3668 |
| Eco24I | GRGCYC | 3 cut(s) | 1101, 1214, 2352 |
| Eco31I | GGTCTC | 1 cut(s) | 2205 |
| Eco32I | GATATC | 2 cut(s) | 1357, 3862 |
| Eco47I | GGWCC | 1 cut(s) | 666 |
| Eco53kI | GAGCTC | 1 cut(s) | 1099 |
| Eco57I | CTGAAG | 8 cut(s) | 1647, 1845, 2438, 2504, 2702, 2768, 3032, 3041 |
| Eco81I | CCTNAGG | 2 cut(s) | 36, 1797 |
| Eco88I | CYCGRG | 2 cut(s) | 2009, 2204 |
| EcoICRI | GAGCTC | 1 cut(s) | 1099 |
| EcoO109I | RGGNCCY | 3 cut(s) | 595, 916, 1801 |
| EcoRI | GAATTC | 1 cut(s) | 2278 |
| EcoRII | CCWGG | 7 cut(s) | 597, 994, 1558, 1748, 1777, 1971, 2952 |
| EcoRV | GATATC | 2 cut(s) | 1357, 3862 |
| EcoT14I | CCWWGG | 1 cut(s) | 3065 |
| EcoT22I | ATGCAT | 4 cut(s) | 400, 1503, 1710, 3434 |
| EcoT38I | GRGCYC | 3 cut(s) | 1101, 1214, 2352 |
| ErhI | CCWWGG | 1 cut(s) | 3065 |
| Esp3I | CGTCTC | 2 cut(s) | 782, 3290 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 2251, 2283 |
| FaqI | GGGAC | 2 cut(s) | 17, 3902 |
| FauI | CCCGC | 2 cut(s) | 13, 1426 |
| FauNDI | CATATG | 1 cut(s) | 1884 |
| FblI | GTMKAC | 1 cut(s) | 3883 |
| Fnu4HI | GCNGC | 8 cut(s) | 474, 757, 864, 2263, 2308, 2311, 3062, 3097 |
| FokI | GGATG | 5 cut(s) | 275, 1678, 3358, 3378, 3646 |
| FriOI | GRGCYC | 3 cut(s) | 1101, 1214, 2352 |
| Fsp4HI | GCNGC | 8 cut(s) | 474, 757, 864, 2263, 2308, 2311, 3062, 3097 |
| FspBI | CTAG | 7 cut(s) | 1020, 1076, 1724, 2901, 3074, 3107, 3407 |
| GlaI | GCGC | 6 cut(s) | 300, 1031, 2415, 2633, 2679, 2877 |
| GluI | GCNGC | 8 cut(s) | 474, 757, 864, 2263, 2308, 2311, 3062, 3097 |
| GsaI | CCCAGC | 1 cut(s) | 1182 |
| GsuI | CTGGAG | 9 cut(s) | 176, 1761, 2447, 2570, 2636, 2711, 2834, 2909, 2966 |
| HapII | CCGG | 4 cut(s) | 82, 512, 664, 3323 |
| HgaI | GACGC | 1 cut(s) | 19 |
| HhaI | GCGC | 6 cut(s) | 301, 1032, 2416, 2634, 2680, 2878 |
| Hin6I | GCGC | 6 cut(s) | 299, 1030, 2414, 2632, 2678, 2876 |
| HinP1I | GCGC | 6 cut(s) | 299, 1030, 2414, 2632, 2678, 2876 |
| HincII | GTYRAC | 4 cut(s) | 1045, 1069, 3027, 3884 |
| HindII | GTYRAC | 4 cut(s) | 1045, 1069, 3027, 3884 |
| HindIII | AAGCTT | 6 cut(s) | 209, 750, 2078, 2210, 3383, 3922 |
| HpaI | GTTAAC | 1 cut(s) | 1069 |
| HpaII | CCGG | 4 cut(s) | 82, 512, 664, 3323 |
| HphI | GGTGA | 7 cut(s) | 85, 332, 986, 1265, 2012, 3763, 3856 |
| Hpy166II | GTNNAC | 7 cut(s) | 323, 1045, 1069, 1746, 3027, 3224, 3884 |
| Hpy8I | GTNNAC | 7 cut(s) | 323, 1045, 1069, 1746, 3027, 3224, 3884 |
| Hpy99I | CGWCG | 2 cut(s) | 1852, 3888 |
| HpyCH4III | ACNGT | 6 cut(s) | 327, 670, 835, 908, 3115, 3176 |
| HpyCH4IV | ACGT | 8 cut(s) | 418, 618, 1139, 1680, 1945, 2302, 3101, 3283 |
| HpySE526I | ACGT | 8 cut(s) | 418, 618, 1139, 1680, 1945, 2302, 3101, 3283 |
| HspAI | GCGC | 6 cut(s) | 299, 1030, 2414, 2632, 2678, 2876 |
| Kpn2I | TCCGGA | 1 cut(s) | 663 |
| KspAI | GTTAAC | 1 cut(s) | 1069 |
| LguI | GCTCTTC | 1 cut(s) | 2235 |
| Lsp1109I | GCAGC | 6 cut(s) | 485, 743, 2274, 2294, 3048, 3083 |
| MaeI | CTAG | 7 cut(s) | 1020, 1076, 1724, 2901, 3074, 3107, 3407 |
| MaeII | ACGT | 8 cut(s) | 418, 618, 1139, 1680, 1945, 2302, 3101, 3283 |
| MaeIII | GTNAC | 5 cut(s) | 1012, 1367, 3102, 3419, 3521 |
| MbiI | CCGCTC | 2 cut(s) | 866, 2313 |
| MflI | RGATCY | 6 cut(s) | 355, 1474, 1657, 1726, 2224, 3705 |
| MhlI | GDGCHC | 9 cut(s) | 447, 1101, 1214, 1971, 2352, 2556, 2622, 2820, 3226 |
| MlsI | TGGCCA | 1 cut(s) | 1646 |
| MluNI | TGGCCA | 1 cut(s) | 1646 |
| MmeI | TCCRAC | 2 cut(s) | 583, 949 |
| Mox20I | TGGCCA | 1 cut(s) | 1646 |
| Mph1103I | ATGCAT | 4 cut(s) | 400, 1503, 1710, 3434 |
| MroI | TCCGGA | 1 cut(s) | 663 |
| MroXI | GAANNNNTTC | 4 cut(s) | 89, 419, 1533, 3615 |
| MscI | TGGCCA | 1 cut(s) | 1646 |
| MslI | CAYNNNNRTG | 7 cut(s) | 105, 1386, 1454, 1469, 1652, 2025, 2097 |
| Msp20I | TGGCCA | 1 cut(s) | 1646 |
| MspCI | CTTAAG | 2 cut(s) | 839, 2246 |
| MspI | CCGG | 4 cut(s) | 82, 512, 664, 3323 |
| MspR9I | CCNGG | 9 cut(s) | 82, 599, 996, 1560, 1750, 1779, 1973, 2954, 3324 |
| Mva1269I | GAATGC | 2 cut(s) | 290, 2016 |
| MvaI | CCWGG | 7 cut(s) | 599, 996, 1560, 1750, 1779, 1973, 2954 |
| MvnI | CGCG | 2 cut(s) | 2634, 2876 |
| NciI | CCSGG | 2 cut(s) | 82, 3324 |
| NcoI | CCATGG | 1 cut(s) | 3065 |
| NdeI | CATATG | 1 cut(s) | 1884 |
| NlaIV | GGNNCC | 2 cut(s) | 1213, 3834 |
| NmuCI | GTSAC | 4 cut(s) | 1012, 1367, 3102, 3521 |
| NsiI | ATGCAT | 4 cut(s) | 400, 1503, 1710, 3434 |
| NspI | RCATGY | 1 cut(s) | 1036 |
| NspV | TTCGAA | 2 cut(s) | 747, 1698 |
| OliI | CACNNNNGTG | 1 cut(s) | 2025 |
| PaeI | GCATGC | 1 cut(s) | 1036 |
| PaeR7I | CTCGAG | 2 cut(s) | 2009, 2204 |
| PceI | AGGCCT | 2 cut(s) | 3543, 3668 |
| PciSI | GCTCTTC | 1 cut(s) | 2235 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 615 |
| PctI | GAATGC | 2 cut(s) | 290, 2016 |
| PdmI | GAANNNNTTC | 4 cut(s) | 89, 419, 1533, 3615 |
| Pfl23II | CGTACG | 1 cut(s) | 619 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 875 |
| PfoI | TCCNGGA | 2 cut(s) | 1558, 3322 |
| PkrI | GCNGC | 8 cut(s) | 475, 758, 865, 2264, 2309, 2312, 3063, 3098 |
| Ppu21I | YACGTR | 3 cut(s) | 619, 1681, 2303 |
| PshBI | ATTAAT | 1 cut(s) | 3309 |
| Psp124BI | GAGCTC | 1 cut(s) | 1101 |
| Psp1406I | AACGTT | 1 cut(s) | 418 |
| Psp6I | CCWGG | 7 cut(s) | 597, 994, 1558, 1748, 1777, 1971, 2952 |
| PspFI | CCCAGC | 1 cut(s) | 1178 |
| PspGI | CCWGG | 7 cut(s) | 597, 994, 1558, 1748, 1777, 1971, 2952 |
| PspLI | CGTACG | 1 cut(s) | 619 |
| PspN4I | GGNNCC | 2 cut(s) | 1213, 3834 |
| PspPI | GGNCC | 5 cut(s) | 595, 666, 916, 992, 1801 |
| PsuI | RGATCY | 6 cut(s) | 355, 1474, 1657, 1726, 2224, 3705 |
| RseI | CAYNNNNRTG | 7 cut(s) | 105, 1386, 1454, 1469, 1652, 2025, 2097 |
| Rsr2I | CGGWCCG | 1 cut(s) | 666 |
| RsrII | CGGWCCG | 1 cut(s) | 666 |
| SacI | GAGCTC | 1 cut(s) | 1101 |
| SalI | GTCGAC | 1 cut(s) | 3882 |
| SapI | GCTCTTC | 1 cut(s) | 2235 |
| SatI | GCNGC | 8 cut(s) | 474, 757, 864, 2263, 2308, 2311, 3062, 3097 |
| Sau96I | GGNCC | 5 cut(s) | 595, 666, 916, 992, 1801 |
| ScaI | AGTACT | 1 cut(s) | 837 |
| ScrFI | CCNGG | 9 cut(s) | 82, 599, 996, 1560, 1750, 1779, 1973, 2954, 3324 |
| SduI | GDGCHC | 9 cut(s) | 447, 1101, 1214, 1971, 2352, 2556, 2622, 2820, 3226 |
| Sfr274I | CTCGAG | 2 cut(s) | 2009, 2204 |
| SfuI | TTCGAA | 2 cut(s) | 747, 1698 |
| SinI | GGWCC | 1 cut(s) | 666 |
| SlaI | CTCGAG | 2 cut(s) | 2009, 2204 |
| SmiMI | CAYNNNNRTG | 7 cut(s) | 105, 1386, 1454, 1469, 1652, 2025, 2097 |
| SphI | GCATGC | 1 cut(s) | 1036 |
| SseBI | AGGCCT | 2 cut(s) | 3543, 3668 |
| SsiI | CCGC | 5 cut(s) | 6, 864, 1433, 2311, 2874 |
| SspI | AATATT | 1 cut(s) | 3313 |
| SspMI | CTAG | 7 cut(s) | 1020, 1076, 1724, 2901, 3074, 3107, 3407 |
| SstI | GAGCTC | 1 cut(s) | 1101 |
| StuI | AGGCCT | 2 cut(s) | 3543, 3668 |
| StyD4I | CCNGG | 9 cut(s) | 80, 597, 994, 1558, 1748, 1777, 1971, 2952, 3322 |
| StyI | CCWWGG | 1 cut(s) | 3065 |
| TaaI | ACNGT | 6 cut(s) | 327, 670, 835, 908, 3115, 3176 |
| TaiI | ACGT | 8 cut(s) | 421, 621, 1142, 1683, 1948, 2305, 3104, 3286 |
| TatI | WGTACW | 4 cut(s) | 835, 908, 1603, 2361 |
| TauI | GCSGC | 2 cut(s) | 866, 2313 |
| TscAI | CASTG | 6 cut(s) | 205, 2430, 2694, 2892, 3748, 3910 |
| TseFI | GTSAC | 4 cut(s) | 1012, 1367, 3102, 3521 |
| TseI | GCWGC | 6 cut(s) | 473, 756, 2262, 2307, 3061, 3096 |
| Tsp45I | GTSAC | 4 cut(s) | 1012, 1367, 3102, 3521 |
| TspGWI | ACGGA | 4 cut(s) | 1204, 1211, 1459, 3241 |
| TspRI | CASTG | 6 cut(s) | 205, 2430, 2694, 2892, 3748, 3910 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 875 |
| Vha464I | CTTAAG | 2 cut(s) | 839, 2246 |
| VneI | GTGCAC | 1 cut(s) | 3222 |
| VpaK11BI | GGWCC | 1 cut(s) | 666 |
| VspI | ATTAAT | 1 cut(s) | 3309 |
| XapI | RAATTY | 7 cut(s) | 959, 1274, 1401, 2118, 2278, 3333, 3611 |
| XbaI | TCTAGA | 1 cut(s) | 3073 |
| XceI | RCATGY | 1 cut(s) | 1036 |
| XhoI | CTCGAG | 2 cut(s) | 2009, 2204 |
| XmiI | GTMKAC | 1 cut(s) | 3883 |
| XmnI | GAANNNNTTC | 4 cut(s) | 89, 419, 1533, 3615 |
| XspI | CTAG | 7 cut(s) | 1020, 1076, 1724, 2901, 3074, 3107, 3407 |
| ZrmI | AGTACT | 1 cut(s) | 837 |
| Zsp2I | ATGCAT | 4 cut(s) | 400, 1503, 1710, 3434 |