Disease resistance protein (TIR-NBS-LRR class)
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| TIR | PF01582 | 13 - 189 | 6.1e-54 | TIR domain |
| TIR_2 | PF13676 | 15 - 124 | 1.2e-12 | TIR domain |
| NB-ARC | PF00931 | 208 - 368 | 4.7e-16 | NB-ARC domain |
| WHD_ROQ1 | PF23282 | 439 - 514 | 3.8e-17 | Disease resistance protein Roq1-like, winged-helix domain |
| LRR_14 | PF23598 | 683 - 762 | 3.4e-07 | Leucine-rich repeat region |
| LRR_14 | PF23598 | 753 - 833 | 7.5e-06 | Leucine-rich repeat region |
| LRR_13 | PF23286 | 801 - 983 | 3.8e-16 | Disease resistance protein RPS4B-like, leucine-rich repeats |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 2 cut(s) | 178, 377 |
| Acc36I | ACCTGC | 3 cut(s) | 178, 377, 2718 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 2685 |
| AccI | GTMKAC | 3 cut(s) | 697, 1047, 2998 |
| AciI | CCGC | 6 cut(s) | 73, 657, 1415, 1480, 1564, 3579 |
| AclWI | GGATC | 6 cut(s) | 537, 850, 2496, 3160, 3237, 3250 |
| AcsI | RAATTY | 8 cut(s) | 1838, 2103, 2140, 2357, 2736, 3040, 3137, 3289 |
| AcuI | CTGAAG | 7 cut(s) | 1067, 1569, 2428, 3165, 3168, 3258, 3543 |
| AfaI | GTAC | 5 cut(s) | 1014, 2152, 2961, 3415, 3546 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 839, 1363, 2685, 2769, 2969, 3566 |
| AflII | CTTAAG | 1 cut(s) | 98 |
| AflIII | ACRYGT | 1 cut(s) | 334 |
| AhlI | ACTAGT | 1 cut(s) | 490 |
| AjnI | CCWGG | 6 cut(s) | 955, 1555, 2011, 2481, 2583, 3199 |
| AjuI | GAANNNNNNNTTGG | 6 cut(s) | 915, 947, 2529, 2561, 3246, 3278 |
| AleI | CACNNNNGTG | 1 cut(s) | 244 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 927, 959 |
| Alw21I | GWGCWC | 3 cut(s) | 414, 1671, 2889 |
| AlwI | GGATC | 6 cut(s) | 537, 850, 2496, 3160, 3237, 3250 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 3188 |
| AoxI | GGCC | 4 cut(s) | 952, 1805, 2833, 3557 |
| ApeKI | GCWGC | 8 cut(s) | 362, 365, 440, 991, 1136, 1166, 1954, 2922 |
| ApoI | RAATTY | 8 cut(s) | 1838, 2103, 2140, 2357, 2736, 3040, 3137, 3289 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1829, 1861 |
| AseI | ATTAAT | 1 cut(s) | 599 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 789, 1080, 1629 |
| AspA2I | CCTAGG | 1 cut(s) | 1916 |
| AspLEI | GCGC | 3 cut(s) | 1734, 1761, 3410 |
| AspS9I | GGNCC | 1 cut(s) | 953 |
| AsuC2I | CCSGG | 1 cut(s) | 3058 |
| AsuHPI | GGTGA | 4 cut(s) | 231, 404, 603, 3395 |
| AsuII | TTCGAA | 1 cut(s) | 631 |
| AvrII | CCTAGG | 1 cut(s) | 1916 |
| AxyI | CCTNAGG | 2 cut(s) | 1718, 2837 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 3580, 3613 |
| BamHI | GGATCC | 1 cut(s) | 3242 |
| BanII | GRGCYC | 2 cut(s) | 1671, 2889 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 688, 720 |
| BauI | CACGAG | 1 cut(s) | 870 |
| BbsI | GAAGAC | 2 cut(s) | 2372, 2682 |
| Bbv12I | GWGCWC | 3 cut(s) | 414, 1671, 2889 |
| BbvI | GCAGC | 8 cut(s) | 352, 374, 452, 1003, 1148, 1153, 1966, 2909 |
| BccI | CCATC | 7 cut(s) | 99, 104, 394, 2633, 2825, 3399, 3665 |
| BceAI | ACGGC | 1 cut(s) | 3117 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 212, 246 |
| BciT130I | CCWGG | 6 cut(s) | 957, 1557, 2013, 2483, 2585, 3201 |
| BciVI | GTATCC | 1 cut(s) | 3581 |
| BclI | TGATCA | 1 cut(s) | 3004 |
| BcnI | CCSGG | 1 cut(s) | 3058 |
| BcuI | ACTAGT | 1 cut(s) | 490 |
| BfmI | CTRYAG | 6 cut(s) | 1134, 1167, 1187, 2001, 2154, 3592 |
| BfoI | RGCGCY | 1 cut(s) | 1735 |
| BfrI | CTTAAG | 1 cut(s) | 98 |
| BfuAI | ACCTGC | 3 cut(s) | 178, 377, 2718 |
| BfuI | GTATCC | 1 cut(s) | 3581 |
| BglII | AGATCT | 3 cut(s) | 1972, 2005, 2779 |
| BisI | GCNGC | 8 cut(s) | 363, 366, 441, 992, 1137, 1167, 1955, 2923 |
| BlnI | CCTAGG | 1 cut(s) | 1916 |
| BlsI | GCNGC | 8 cut(s) | 364, 367, 442, 993, 1138, 1168, 1956, 2924 |
| BmcAI | AGTACT | 2 cut(s) | 1014, 2152 |
| Bme1390I | CCNGG | 7 cut(s) | 957, 1557, 2013, 2483, 2585, 3058, 3201 |
| BmgT120I | GGNCC | 1 cut(s) | 953 |
| BmiI | GGNNCC | 5 cut(s) | 1126, 1201, 1580, 2843, 3244 |
| BmrFI | CCNGG | 7 cut(s) | 957, 1557, 2013, 2483, 2585, 3058, 3201 |
| BpiI | GAAGAC | 2 cut(s) | 2372, 2682 |
| BplI | GAGNNNNNCTC | 8 cut(s) | 853, 885, 2407, 2439, 2794, 2826, 3158, 3190 |
| BpmI | CTGGAG | 5 cut(s) | 1668, 1871, 2504, 2606, 2791 |
| Bpu14I | TTCGAA | 1 cut(s) | 631 |
| BpuEI | CTTGAG | 7 cut(s) | 167, 398, 526, 1696, 2432, 2954, 3116 |
| BpuMI | CCSGG | 1 cut(s) | 3058 |
| Bsa29I | ATCGAT | 1 cut(s) | 2177 |
| BsaAI | YACGTR | 1 cut(s) | 2699 |
| BsaBI | GATNNNNATC | 1 cut(s) | 3081 |
| BsaJI | CCNNGG | 4 cut(s) | 242, 955, 1916, 3200 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 159, 189, 927, 957, 2871, 2901 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 839, 1363, 2685, 2769, 2969, 3566 |
| Bse1I | ACTGG | 2 cut(s) | 276, 1621 |
| Bse21I | CCTNAGG | 2 cut(s) | 1718, 2837 |
| Bse3DI | GCAATG | 4 cut(s) | 25, 1754, 1759, 2086 |
| Bse8I | GATNNNNATC | 1 cut(s) | 3081 |
| BseBI | CCWGG | 6 cut(s) | 957, 1557, 2013, 2483, 2585, 3201 |
| BseCI | ATCGAT | 1 cut(s) | 2177 |
| BseDI | CCNNGG | 4 cut(s) | 242, 955, 1916, 3200 |
| BseGI | GGATG | 8 cut(s) | 259, 1500, 2342, 2438, 2648, 2983, 3052, 3079 |
| BseJI | GATNNNNATC | 1 cut(s) | 3081 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 839, 1363, 2685, 2769, 2969, 3566 |
| BseMI | GCAATG | 4 cut(s) | 25, 1754, 1759, 2086 |
| BseMII | CTCAG | 3 cut(s) | 2072, 2774, 2851 |
| BseNI | ACTGG | 2 cut(s) | 276, 1621 |
| BseRI | GAGGAG | 2 cut(s) | 1379, 3119 |
| BseXI | GCAGC | 8 cut(s) | 352, 374, 452, 1003, 1148, 1153, 1966, 2909 |
| BsgI | GTGCAG | 2 cut(s) | 1076, 2908 |
| BshFI | GGCC | 4 cut(s) | 954, 1807, 2835, 3559 |
| BshVI | ATCGAT | 1 cut(s) | 2177 |
| BsiHKAI | GWGCWC | 3 cut(s) | 414, 1671, 2889 |
| BsiSI | CCGG | 1 cut(s) | 3058 |
| BslFI | GGGAC | 1 cut(s) | 2305 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 839, 1363, 2685, 2769, 2969, 3566 |
| BsmFI | GGGAC | 1 cut(s) | 2305 |
| BsmI | GAATGC | 6 cut(s) | 281, 579, 1105, 1173, 2667, 3058 |
| BsnI | GGCC | 4 cut(s) | 954, 1807, 2835, 3559 |
| Bsp119I | TTCGAA | 1 cut(s) | 631 |
| Bsp1286I | GDGCHC | 3 cut(s) | 414, 1671, 2889 |
| Bsp1407I | TGTACA | 1 cut(s) | 3544 |
| Bsp19I | CCATGG | 1 cut(s) | 242 |
| BspACI | CCGC | 6 cut(s) | 73, 657, 1415, 1480, 1564, 3579 |
| BspANI | GGCC | 4 cut(s) | 954, 1807, 2835, 3559 |
| BspCNI | CTCAG | 3 cut(s) | 2073, 2775, 2850 |
| BspDI | ATCGAT | 1 cut(s) | 2177 |
| BspHI | TCATGA | 2 cut(s) | 1534, 3010 |
| BspLI | GGNNCC | 5 cut(s) | 1126, 1201, 1580, 2843, 3244 |
| BspMAI | CTGCAG | 3 cut(s) | 1138, 1171, 2158 |
| BspMI | ACCTGC | 3 cut(s) | 178, 377, 2718 |
| BspPI | GGATC | 6 cut(s) | 537, 850, 2496, 3160, 3237, 3250 |
| BspT104I | TTCGAA | 1 cut(s) | 631 |
| BspTI | CTTAAG | 1 cut(s) | 98 |
| BsrDI | GCAATG | 4 cut(s) | 25, 1754, 1759, 2086 |
| BsrGI | TGTACA | 1 cut(s) | 3544 |
| BsrI | ACTGG | 2 cut(s) | 276, 1621 |
| BssECI | CCNNGG | 4 cut(s) | 242, 955, 1916, 3200 |
| BssNAI | GTATAC | 1 cut(s) | 1048 |
| BssSI | CACGAG | 1 cut(s) | 870 |
| BssT1I | CCWWGG | 2 cut(s) | 242, 1916 |
| Bst1107I | GTATAC | 1 cut(s) | 1048 |
| Bst2BI | CACGAG | 1 cut(s) | 870 |
| Bst2UI | CCWGG | 6 cut(s) | 957, 1557, 2013, 2483, 2585, 3201 |
| Bst6I | CTCTTC | 6 cut(s) | 347, 416, 709, 1782, 2157, 2338 |
| BstAFI | CTTAAG | 1 cut(s) | 98 |
| BstAUI | TGTACA | 1 cut(s) | 3544 |
| BstBAI | YACGTR | 1 cut(s) | 2699 |
| BstBI | TTCGAA | 1 cut(s) | 631 |
| BstC8I | GCNNGC | 8 cut(s) | 1171, 1226, 1562, 1805, 1809, 1952, 3561, 3620 |
| BstDSI | CCRYGG | 1 cut(s) | 242 |
| BstF5I | GGATG | 8 cut(s) | 259, 1500, 2342, 2438, 2648, 2983, 3052, 3079 |
| BstH2I | RGCGCY | 1 cut(s) | 1735 |
| BstHHI | GCGC | 3 cut(s) | 1734, 1761, 3410 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 371, 1133, 1758, 3311, 3524 |
| BstNI | CCWGG | 6 cut(s) | 957, 1557, 2013, 2483, 2585, 3201 |
| BstNSI | RCATGY | 2 cut(s) | 338, 1353 |
| BstSCI | CCNGG | 7 cut(s) | 955, 1555, 2011, 2481, 2583, 3056, 3199 |
| BstSFI | CTRYAG | 6 cut(s) | 1134, 1167, 1187, 2001, 2154, 3592 |
| BstV1I | GCAGC | 8 cut(s) | 352, 374, 452, 1003, 1148, 1153, 1966, 2909 |
| BstV2I | GAAGAC | 2 cut(s) | 2372, 2682 |
| BstX2I | RGATCY | 5 cut(s) | 1972, 2005, 2488, 2779, 3242 |
| BstYI | RGATCY | 5 cut(s) | 1972, 2005, 2488, 2779, 3242 |
| BstZ17I | GTATAC | 1 cut(s) | 1048 |
| Bsu15I | ATCGAT | 1 cut(s) | 2177 |
| Bsu36I | CCTNAGG | 2 cut(s) | 1718, 2837 |
| BsuI | GTATCC | 1 cut(s) | 3581 |
| BsuRI | GGCC | 4 cut(s) | 954, 1807, 2835, 3559 |
| BsuTUI | ATCGAT | 1 cut(s) | 2177 |
| BtgI | CCRYGG | 1 cut(s) | 242 |
| BtsCI | GGATG | 8 cut(s) | 259, 1500, 2342, 2438, 2648, 2983, 3052, 3079 |
| BtsI | GCAGTG | 1 cut(s) | 1158 |
| BtsIMutI | CAGTG | 4 cut(s) | 910, 1158, 2946, 3519 |
| BveI | ACCTGC | 3 cut(s) | 178, 377, 2718 |
| Cac8I | GCNNGC | 8 cut(s) | 1171, 1226, 1562, 1805, 1809, 1952, 3561, 3620 |
| CaiI | CAGNNNCTG | 1 cut(s) | 3188 |
| CciI | TCATGA | 2 cut(s) | 1534, 3010 |
| CfoI | GCGC | 3 cut(s) | 1734, 1761, 3410 |
| Cfr13I | GGNCC | 1 cut(s) | 953 |
| ClaI | ATCGAT | 1 cut(s) | 2177 |
| CseI | GACGC | 1 cut(s) | 2817 |
| Csp6I | GTAC | 5 cut(s) | 1013, 2151, 2960, 3414, 3545 |
| CviQI | GTAC | 5 cut(s) | 1013, 2151, 2960, 3414, 3545 |
| DraI | TTTAAA | 1 cut(s) | 1821 |
| Eam1104I | CTCTTC | 6 cut(s) | 347, 416, 709, 1782, 2157, 2338 |
| EarI | CTCTTC | 6 cut(s) | 347, 416, 709, 1782, 2157, 2338 |
| Ecl136II | GAGCTC | 2 cut(s) | 1669, 2887 |
| Eco130I | CCWWGG | 2 cut(s) | 242, 1916 |
| Eco147I | AGGCCT | 1 cut(s) | 3559 |
| Eco24I | GRGCYC | 2 cut(s) | 1671, 2889 |
| Eco32I | GATATC | 1 cut(s) | 1796 |
| Eco53kI | GAGCTC | 2 cut(s) | 1669, 2887 |
| Eco57I | CTGAAG | 7 cut(s) | 1067, 1569, 2428, 3165, 3168, 3258, 3543 |
| Eco81I | CCTNAGG | 2 cut(s) | 1718, 2837 |
| EcoICRI | GAGCTC | 2 cut(s) | 1669, 2887 |
| EcoRII | CCWGG | 6 cut(s) | 955, 1555, 2011, 2481, 2583, 3199 |
| EcoRV | GATATC | 1 cut(s) | 1796 |
| EcoT14I | CCWWGG | 2 cut(s) | 242, 1916 |
| EcoT22I | ATGCAT | 2 cut(s) | 1312, 1500 |
| EcoT38I | GRGCYC | 2 cut(s) | 1671, 2889 |
| ErhI | CCWWGG | 2 cut(s) | 242, 1916 |
| FaqI | GGGAC | 1 cut(s) | 2305 |
| FauI | CCCGC | 1 cut(s) | 80 |
| FauNDI | CATATG | 1 cut(s) | 1095 |
| FbaI | TGATCA | 1 cut(s) | 3004 |
| FblI | GTMKAC | 3 cut(s) | 697, 1047, 2998 |
| Fnu4HI | GCNGC | 8 cut(s) | 363, 366, 441, 992, 1137, 1167, 1955, 2923 |
| FokI | GGATG | 8 cut(s) | 266, 1507, 2329, 2445, 2655, 2990, 3059, 3086 |
| FriOI | GRGCYC | 2 cut(s) | 1671, 2889 |
| Fsp4HI | GCNGC | 8 cut(s) | 363, 366, 441, 992, 1137, 1167, 1955, 2923 |
| GlaI | GCGC | 3 cut(s) | 1733, 1760, 3409 |
| GluI | GCNGC | 8 cut(s) | 363, 366, 441, 992, 1137, 1167, 1955, 2923 |
| GsuI | CTGGAG | 5 cut(s) | 1668, 1871, 2504, 2606, 2791 |
| HaeII | RGCGCY | 1 cut(s) | 1735 |
| HaeIII | GGCC | 4 cut(s) | 954, 1807, 2835, 3559 |
| HapII | CCGG | 1 cut(s) | 3058 |
| HgaI | GACGC | 1 cut(s) | 2817 |
| HhaI | GCGC | 3 cut(s) | 1734, 1761, 3410 |
| Hin6I | GCGC | 3 cut(s) | 1732, 1759, 3408 |
| HinP1I | GCGC | 3 cut(s) | 1732, 1759, 3408 |
| HincII | GTYRAC | 1 cut(s) | 856 |
| HindII | GTYRAC | 1 cut(s) | 856 |
| HindIII | AAGCTT | 4 cut(s) | 717, 2063, 2195, 2930 |
| HpaI | GTTAAC | 1 cut(s) | 856 |
| HpaII | CCGG | 1 cut(s) | 3058 |
| HphI | GGTGA | 4 cut(s) | 231, 404, 603, 3395 |
| Hpy99I | CGWCG | 1 cut(s) | 1215 |
| HpyCH4IV | ACGT | 1 cut(s) | 2698 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 371, 1133, 1758, 3311, 3524 |
| HpySE526I | ACGT | 1 cut(s) | 2698 |
| HspAI | GCGC | 3 cut(s) | 1732, 1759, 3408 |
| Ksp22I | TGATCA | 1 cut(s) | 3004 |
| KspAI | GTTAAC | 1 cut(s) | 856 |
| LmnI | GCTCC | 5 cut(s) | 1025, 1124, 1790, 2892, 3060 |
| Lsp1109I | GCAGC | 8 cut(s) | 352, 374, 452, 1003, 1148, 1153, 1966, 2909 |
| MaeII | ACGT | 1 cut(s) | 2698 |
| MaeIII | GTNAC | 5 cut(s) | 330, 356, 2855, 2943, 3319 |
| MfeI | CAATTG | 2 cut(s) | 186, 1371 |
| MflI | RGATCY | 5 cut(s) | 1972, 2005, 2488, 2779, 3242 |
| MhlI | GDGCHC | 3 cut(s) | 414, 1671, 2889 |
| MlyI | GAGTC | 7 cut(s) | 491, 693, 1124, 1675, 2092, 2386, 2597 |
| MmeI | TCCRAC | 3 cut(s) | 913, 2234, 2408 |
| Mph1103I | ATGCAT | 2 cut(s) | 1312, 1500 |
| MroXI | GAANNNNTTC | 3 cut(s) | 789, 1080, 1629 |
| MslI | CAYNNNNRTG | 5 cut(s) | 244, 1098, 1442, 1697, 3662 |
| MspA1I | CMGCKG | 3 cut(s) | 365, 1957, 3581 |
| MspCI | CTTAAG | 1 cut(s) | 98 |
| MspI | CCGG | 1 cut(s) | 3058 |
| MspR9I | CCNGG | 7 cut(s) | 957, 1557, 2013, 2483, 2585, 3058, 3201 |
| MunI | CAATTG | 2 cut(s) | 186, 1371 |
| Mva1269I | GAATGC | 6 cut(s) | 281, 579, 1105, 1173, 2667, 3058 |
| MvaI | CCWGG | 6 cut(s) | 957, 1557, 2013, 2483, 2585, 3201 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 371, 1133, 1758, 3311, 3524 |
| NciI | CCSGG | 1 cut(s) | 3058 |
| NcoI | CCATGG | 1 cut(s) | 242 |
| NdeI | CATATG | 1 cut(s) | 1095 |
| NlaIV | GGNNCC | 5 cut(s) | 1126, 1201, 1580, 2843, 3244 |
| NmuCI | GTSAC | 2 cut(s) | 330, 2943 |
| NsiI | ATGCAT | 2 cut(s) | 1312, 1500 |
| NspI | RCATGY | 2 cut(s) | 338, 1353 |
| NspV | TTCGAA | 1 cut(s) | 631 |
| OliI | CACNNNNGTG | 1 cut(s) | 244 |
| PagI | TCATGA | 2 cut(s) | 1534, 3010 |
| PaqCI | CACCTGC | 2 cut(s) | 178, 377 |
| PceI | AGGCCT | 1 cut(s) | 3559 |
| PciI | ACATGT | 1 cut(s) | 334 |
| PctI | GAATGC | 6 cut(s) | 281, 579, 1105, 1173, 2667, 3058 |
| PdmI | GAANNNNTTC | 3 cut(s) | 789, 1080, 1629 |
| PflFI | GACNNNGTC | 1 cut(s) | 2941 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 2685 |
| PkrI | GCNGC | 8 cut(s) | 364, 367, 442, 993, 1138, 1168, 1956, 2924 |
| PleI | GAGTC | 7 cut(s) | 490, 693, 1124, 1675, 2091, 2385, 2596 |
| PpsI | GAGTC | 7 cut(s) | 490, 693, 1124, 1675, 2091, 2385, 2596 |
| Ppu21I | YACGTR | 1 cut(s) | 2699 |
| PscI | ACATGT | 1 cut(s) | 334 |
| PshBI | ATTAAT | 1 cut(s) | 599 |
| Psp124BI | GAGCTC | 2 cut(s) | 1671, 2889 |
| Psp6I | CCWGG | 6 cut(s) | 955, 1555, 2011, 2481, 2583, 3199 |
| PspGI | CCWGG | 6 cut(s) | 955, 1555, 2011, 2481, 2583, 3199 |
| PspN4I | GGNNCC | 5 cut(s) | 1126, 1201, 1580, 2843, 3244 |
| PspPI | GGNCC | 1 cut(s) | 953 |
| PstI | CTGCAG | 3 cut(s) | 1138, 1171, 2158 |
| PstNI | CAGNNNCTG | 1 cut(s) | 3188 |
| PsuI | RGATCY | 5 cut(s) | 1972, 2005, 2488, 2779, 3242 |
| PsyI | GACNNNGTC | 1 cut(s) | 2941 |
| PvuII | CAGCTG | 2 cut(s) | 365, 1957 |
| RsaI | GTAC | 5 cut(s) | 1014, 2152, 2961, 3415, 3546 |
| RsaNI | GTAC | 5 cut(s) | 1013, 2151, 2960, 3414, 3545 |
| RseI | CAYNNNNRTG | 5 cut(s) | 244, 1098, 1442, 1697, 3662 |
| SacI | GAGCTC | 2 cut(s) | 1671, 2889 |
| SatI | GCNGC | 8 cut(s) | 363, 366, 441, 992, 1137, 1167, 1955, 2923 |
| Sau96I | GGNCC | 1 cut(s) | 953 |
| ScaI | AGTACT | 2 cut(s) | 1014, 2152 |
| SchI | GAGTC | 7 cut(s) | 491, 693, 1124, 1675, 2092, 2386, 2597 |
| ScrFI | CCNGG | 7 cut(s) | 957, 1557, 2013, 2483, 2585, 3058, 3201 |
| SduI | GDGCHC | 3 cut(s) | 414, 1671, 2889 |
| SfcI | CTRYAG | 6 cut(s) | 1134, 1167, 1187, 2001, 2154, 3592 |
| SfuI | TTCGAA | 1 cut(s) | 631 |
| SmiMI | CAYNNNNRTG | 5 cut(s) | 244, 1098, 1442, 1697, 3662 |
| SmlI | CTYRAG | 8 cut(s) | 98, 146, 413, 541, 1675, 2411, 2933, 3131 |
| SmoI | CTYRAG | 8 cut(s) | 98, 146, 413, 541, 1675, 2411, 2933, 3131 |
| SpeI | ACTAGT | 1 cut(s) | 490 |
| SseBI | AGGCCT | 1 cut(s) | 3559 |
| SsiI | CCGC | 6 cut(s) | 73, 657, 1415, 1480, 1564, 3579 |
| SspI | AATATT | 2 cut(s) | 926, 1345 |
| SstI | GAGCTC | 2 cut(s) | 1671, 2889 |
| StuI | AGGCCT | 1 cut(s) | 3559 |
| StyD4I | CCNGG | 7 cut(s) | 955, 1555, 2011, 2481, 2583, 3056, 3199 |
| StyI | CCWWGG | 2 cut(s) | 242, 1916 |
| TaiI | ACGT | 1 cut(s) | 2701 |
| TaqI | TCGA | 7 cut(s) | 340, 631, 1213, 1860, 2177, 2693, 2951 |
| TatI | WGTACW | 3 cut(s) | 1012, 2150, 3544 |
| TscAI | CASTG | 4 cut(s) | 910, 1158, 2946, 3526 |
| TseFI | GTSAC | 2 cut(s) | 330, 2943 |
| TseI | GCWGC | 8 cut(s) | 362, 365, 440, 991, 1136, 1166, 1954, 2922 |
| Tsp45I | GTSAC | 2 cut(s) | 330, 2943 |
| TspGWI | ACGGA | 1 cut(s) | 318 |
| TspRI | CASTG | 4 cut(s) | 910, 1158, 2946, 3526 |
| Tth111I | GACNNNGTC | 1 cut(s) | 2941 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 2685 |
| Vha464I | CTTAAG | 1 cut(s) | 98 |
| VspI | ATTAAT | 1 cut(s) | 599 |
| XapI | RAATTY | 8 cut(s) | 1838, 2103, 2140, 2357, 2736, 3040, 3137, 3289 |
| XbaI | TCTAGA | 2 cut(s) | 2188, 2704 |
| XceI | RCATGY | 2 cut(s) | 338, 1353 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 2250, 2971 |
| XmaJI | CCTAGG | 1 cut(s) | 1916 |
| XmiI | GTMKAC | 3 cut(s) | 697, 1047, 2998 |
| XmnI | GAANNNNTTC | 3 cut(s) | 789, 1080, 1629 |
| ZrmI | AGTACT | 2 cut(s) | 1014, 2152 |
| Zsp2I | ATGCAT | 2 cut(s) | 1312, 1500 |