TMV resistance protein N-like
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| C-JID | PF20160 | 71 - 116 | 1.8e-11 | C-JID domain |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 20 |
| AcsI | RAATTY | 1 cut(s) | 126 |
| AcuI | CTGAAG | 1 cut(s) | 62 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 200 |
| AgsI | TTSAA | 2 cut(s) | 12, 274 |
| AjiI | CACGTC | 1 cut(s) | 36 |
| ApeKI | GCWGC | 2 cut(s) | 30, 186 |
| ApoI | RAATTY | 1 cut(s) | 126 |
| AspS9I | GGNCC | 1 cut(s) | 291 |
| AsuC2I | CCSGG | 1 cut(s) | 216 |
| AvaII | GGWCC | 1 cut(s) | 291 |
| BaeGI | GKGCMC | 1 cut(s) | 25 |
| BanI | GGYRCC | 1 cut(s) | 20 |
| BbsI | GAAGAC | 1 cut(s) | 50 |
| BbvI | GCAGC | 2 cut(s) | 17, 198 |
| BccI | CCATC | 1 cut(s) | 194 |
| BcnI | CCSGG | 1 cut(s) | 216 |
| BisI | GCNGC | 2 cut(s) | 31, 187 |
| BlsI | GCNGC | 2 cut(s) | 32, 188 |
| Bme1390I | CCNGG | 1 cut(s) | 216 |
| Bme18I | GGWCC | 1 cut(s) | 291 |
| BmgBI | CACGTC | 1 cut(s) | 36 |
| BmgT120I | GGNCC | 1 cut(s) | 291 |
| BmiI | GGNNCC | 2 cut(s) | 22, 279 |
| BmrFI | CCNGG | 1 cut(s) | 216 |
| BmsI | GCATC | 1 cut(s) | 103 |
| BpiI | GAAGAC | 1 cut(s) | 50 |
| BpuMI | CCSGG | 1 cut(s) | 216 |
| BsaBI | GATNNNNATC | 1 cut(s) | 117 |
| BsaJI | CCNNGG | 1 cut(s) | 25 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 200 |
| Bse3DI | GCAATG | 1 cut(s) | 293 |
| Bse8I | GATNNNNATC | 1 cut(s) | 117 |
| BseDI | CCNNGG | 1 cut(s) | 25 |
| BseGI | GGATG | 1 cut(s) | 91 |
| BseJI | GATNNNNATC | 1 cut(s) | 117 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 200 |
| BseMI | GCAATG | 1 cut(s) | 293 |
| BseSI | GKGCMC | 1 cut(s) | 25 |
| BseXI | GCAGC | 2 cut(s) | 17, 198 |
| BsgI | GTGCAG | 1 cut(s) | 16 |
| BshNI | GGYRCC | 1 cut(s) | 20 |
| BsiSI | CCGG | 1 cut(s) | 215 |
| BslFI | GGGAC | 2 cut(s) | 110, 270 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 200 |
| BsmFI | GGGAC | 2 cut(s) | 110, 270 |
| Bsp1286I | GDGCHC | 1 cut(s) | 25 |
| Bsp143I | GATC | 1 cut(s) | 178 |
| Bsp19I | CCATGG | 1 cut(s) | 25 |
| BspLI | GGNNCC | 2 cut(s) | 22, 279 |
| BspT107I | GGYRCC | 1 cut(s) | 20 |
| BsrDI | GCAATG | 1 cut(s) | 293 |
| BssECI | CCNNGG | 1 cut(s) | 25 |
| BssMI | GATC | 1 cut(s) | 178 |
| BssT1I | CCWWGG | 1 cut(s) | 25 |
| Bst4CI | ACNGT | 1 cut(s) | 49 |
| BstC8I | GCNNGC | 1 cut(s) | 191 |
| BstDSI | CCRYGG | 1 cut(s) | 25 |
| BstF5I | GGATG | 1 cut(s) | 91 |
| BstKTI | GATC | 1 cut(s) | 181 |
| BstMBI | GATC | 1 cut(s) | 178 |
| BstNSI | RCATGY | 1 cut(s) | 213 |
| BstSCI | CCNGG | 1 cut(s) | 214 |
| BstSLI | GKGCMC | 1 cut(s) | 25 |
| BstV1I | GCAGC | 2 cut(s) | 17, 198 |
| BstV2I | GAAGAC | 1 cut(s) | 50 |
| BtgI | CCRYGG | 1 cut(s) | 25 |
| BtrI | CACGTC | 1 cut(s) | 36 |
| BtsCI | GGATG | 1 cut(s) | 91 |
| BtsIMutI | CAGTG | 2 cut(s) | 38, 54 |
| Cac8I | GCNNGC | 1 cut(s) | 191 |
| Cfr13I | GGNCC | 1 cut(s) | 291 |
| CviAII | CATG | 4 cut(s) | 26, 69, 210, 358 |
| CviJI | RGCY | 5 cut(s) | 30, 189, 193, 243, 338 |
| CviKI_1 | RGCY | 5 cut(s) | 30, 189, 193, 243, 338 |
| DpnI | GATC | 1 cut(s) | 180 |
| DpnII | GATC | 1 cut(s) | 178 |
| Eco130I | CCWWGG | 1 cut(s) | 25 |
| Eco47I | GGWCC | 1 cut(s) | 291 |
| Eco57I | CTGAAG | 1 cut(s) | 62 |
| EcoT14I | CCWWGG | 1 cut(s) | 25 |
| ErhI | CCWWGG | 1 cut(s) | 25 |
| FaeI | CATG | 4 cut(s) | 29, 72, 213, 361 |
| FaiI | YATR | 8 cut(s) | 27, 70, 104, 211, 328, 343, 345, 359 |
| FaqI | GGGAC | 2 cut(s) | 110, 270 |
| FatI | CATG | 4 cut(s) | 25, 68, 209, 357 |
| FauNDI | CATATG | 1 cut(s) | 343 |
| Fnu4HI | GCNGC | 2 cut(s) | 31, 187 |
| FokI | GGATG | 1 cut(s) | 98 |
| Fsp4HI | GCNGC | 2 cut(s) | 31, 187 |
| GluI | GCNGC | 2 cut(s) | 31, 187 |
| HapII | CCGG | 1 cut(s) | 215 |
| Hin1II | CATG | 4 cut(s) | 29, 72, 213, 361 |
| HinfI | GANTC | 1 cut(s) | 372 |
| HpaII | CCGG | 1 cut(s) | 215 |
| Hpy188I | TCNGA | 1 cut(s) | 383 |
| Hpy188III | TCNNGA | 2 cut(s) | 12, 153 |
| HpyAV | CCTTC | 1 cut(s) | 268 |
| HpyCH4III | ACNGT | 1 cut(s) | 49 |
| HpyCH4IV | ACGT | 1 cut(s) | 35 |
| HpyCH4V | TGCA | 8 cut(s) | 33, 72, 116, 209, 286, 299, 305, 357 |
| HpySE526I | ACGT | 1 cut(s) | 35 |
| Hsp92II | CATG | 4 cut(s) | 29, 72, 213, 361 |
| Kzo9I | GATC | 1 cut(s) | 178 |
| LpnPI | CCDG | 2 cut(s) | 203, 228 |
| Lsp1109I | GCAGC | 2 cut(s) | 17, 198 |
| LweI | GCATC | 1 cut(s) | 103 |
| MaeII | ACGT | 1 cut(s) | 35 |
| MaeIII | GTNAC | 2 cut(s) | 36, 51 |
| MalI | GATC | 1 cut(s) | 180 |
| MboI | GATC | 1 cut(s) | 178 |
| MboII | GAAGA | 1 cut(s) | 55 |
| MfeI | CAATTG | 1 cut(s) | 141 |
| MhlI | GDGCHC | 1 cut(s) | 25 |
| MluCI | AATT | 3 cut(s) | 15, 126, 141 |
| MnlI | CCTC | 2 cut(s) | 247, 291 |
| MseI | TTAA | 1 cut(s) | 412 |
| MspI | CCGG | 1 cut(s) | 215 |
| MspR9I | CCNGG | 1 cut(s) | 216 |
| MunI | CAATTG | 1 cut(s) | 141 |
| NciI | CCSGG | 1 cut(s) | 216 |
| NcoI | CCATGG | 1 cut(s) | 25 |
| NdeI | CATATG | 1 cut(s) | 343 |
| NdeII | GATC | 1 cut(s) | 178 |
| NlaIII | CATG | 4 cut(s) | 29, 72, 213, 361 |
| NlaIV | GGNNCC | 2 cut(s) | 22, 279 |
| NmuCI | GTSAC | 2 cut(s) | 36, 51 |
| NspI | RCATGY | 1 cut(s) | 213 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 327 |
| PfeI | GAWTC | 1 cut(s) | 372 |
| PflFI | GACNNNGTC | 1 cut(s) | 49 |
| PfoI | TCCNGGA | 1 cut(s) | 214 |
| PkrI | GCNGC | 2 cut(s) | 32, 188 |
| PspN4I | GGNNCC | 2 cut(s) | 22, 279 |
| PspPI | GGNCC | 1 cut(s) | 291 |
| PsyI | GACNNNGTC | 1 cut(s) | 49 |
| SaqAI | TTAA | 1 cut(s) | 412 |
| SatI | GCNGC | 2 cut(s) | 31, 187 |
| Sau3AI | GATC | 1 cut(s) | 178 |
| Sau96I | GGNCC | 1 cut(s) | 291 |
| ScrFI | CCNGG | 1 cut(s) | 216 |
| SduI | GDGCHC | 1 cut(s) | 25 |
| SetI | ASST | 3 cut(s) | 38, 82, 279 |
| SfaNI | GCATC | 1 cut(s) | 103 |
| SinI | GGWCC | 1 cut(s) | 291 |
| Sse9I | AATT | 3 cut(s) | 15, 126, 141 |
| StyD4I | CCNGG | 1 cut(s) | 214 |
| StyI | CCWWGG | 1 cut(s) | 25 |
| TaaI | ACNGT | 1 cut(s) | 49 |
| TaiI | ACGT | 1 cut(s) | 38 |
| TaqI | TCGA | 2 cut(s) | 181, 400 |
| TasI | AATT | 3 cut(s) | 15, 126, 141 |
| TfiI | GAWTC | 1 cut(s) | 372 |
| Tru1I | TTAA | 1 cut(s) | 412 |
| Tru9I | TTAA | 1 cut(s) | 412 |
| TscAI | CASTG | 2 cut(s) | 45, 54 |
| TseFI | GTSAC | 2 cut(s) | 36, 51 |
| TseI | GCWGC | 2 cut(s) | 30, 186 |
| Tsp45I | GTSAC | 2 cut(s) | 36, 51 |
| TspDTI | ATGAA | 4 cut(s) | 57, 102, 281, 330 |
| TspGWI | ACGGA | 1 cut(s) | 356 |
| TspRI | CASTG | 2 cut(s) | 45, 54 |
| Tth111I | GACNNNGTC | 1 cut(s) | 49 |
| VpaK11BI | GGWCC | 1 cut(s) | 291 |
| XapI | RAATTY | 1 cut(s) | 126 |
| XceI | RCATGY | 1 cut(s) | 213 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 197 |