RESISTANCE protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| TIR | PF01582 | 104 - 281 | 2.7e-49 | TIR domain |
| TIR_2 | PF13676 | 107 - 203 | 2.2e-13 | TIR domain |
| NB-ARC | PF00931 | 287 - 453 | 2.1e-20 | NB-ARC domain |
| WHD_ROQ1 | PF23282 | 524 - 598 | 2.8e-17 | Disease resistance protein Roq1-like, winged-helix domain |
| LRR_3 | PF07725 | 698 - 715 | 8.7e-06 | Leucine Rich Repeat |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 636 |
| Acc16I | TGCGCA | 1 cut(s) | 1575 |
| AccII | CGCG | 1 cut(s) | 1788 |
| AciI | CCGC | 2 cut(s) | 349, 859 |
| AclI | AACGTT | 1 cut(s) | 664 |
| AclWI | GGATC | 4 cut(s) | 1623, 1926, 2167, 2253 |
| AcoI | YGGCCR | 1 cut(s) | 1651 |
| AcsI | RAATTY | 6 cut(s) | 355, 1440, 1527, 2078, 2274, 2372 |
| AcuI | CTGAAG | 1 cut(s) | 443 |
| AdeI | CACNNNGTG | 1 cut(s) | 522 |
| AfaI | GTAC | 4 cut(s) | 65, 1141, 1263, 1761 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 1217 |
| AflII | CTTAAG | 1 cut(s) | 1073 |
| AgeI | ACCGGT | 1 cut(s) | 722 |
| AjnI | CCWGG | 2 cut(s) | 669, 2155 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 692, 724 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 1677, 1709 |
| AluBI | AGCT | 7 cut(s) | 704, 1132, 1274, 1303, 1551, 2104, 2448 |
| AluI | AGCT | 7 cut(s) | 704, 1132, 1274, 1303, 1551, 2104, 2448 |
| Alw21I | GWGCWC | 2 cut(s) | 1502, 2241 |
| Alw26I | GTCTC | 4 cut(s) | 426, 970, 1713, 2342 |
| AlwI | GGATC | 4 cut(s) | 1623, 1926, 2167, 2253 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 191, 215 |
| AoxI | GGCC | 3 cut(s) | 838, 1651, 2146 |
| ApeKI | GCWGC | 8 cut(s) | 72, 191, 194, 215, 218, 227, 704, 2331 |
| ApoI | RAATTY | 6 cut(s) | 355, 1440, 1527, 2078, 2274, 2372 |
| AseI | ATTAAT | 1 cut(s) | 891 |
| AsiGI | ACCGGT | 1 cut(s) | 722 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 1527, 1782, 1881 |
| AspLEI | GCGC | 2 cut(s) | 72, 1576 |
| AspS9I | GGNCC | 1 cut(s) | 1202 |
| AsuC2I | CCSGG | 1 cut(s) | 1809 |
| AsuHPI | GGTGA | 3 cut(s) | 293, 496, 700 |
| AsuII | TTCGAA | 1 cut(s) | 993 |
| AvaII | GGWCC | 1 cut(s) | 1202 |
| BaeGI | GKGCMC | 1 cut(s) | 585 |
| BalI | TGGCCA | 1 cut(s) | 1653 |
| BanII | GRGCYC | 1 cut(s) | 1809 |
| BbsI | GAAGAC | 2 cut(s) | 998, 1819 |
| Bbv12I | GWGCWC | 2 cut(s) | 1502, 2241 |
| BbvCI | CCTCAGC | 2 cut(s) | 198, 222 |
| BbvI | GCAGC | 8 cut(s) | 59, 178, 181, 202, 205, 214, 691, 2318 |
| BccI | CCATC | 9 cut(s) | 56, 272, 375, 568, 613, 1037, 1217, 1676, 2135 |
| BceAI | ACGGC | 2 cut(s) | 1234, 2395 |
| BciT130I | CCWGG | 2 cut(s) | 671, 2157 |
| BclI | TGATCA | 1 cut(s) | 486 |
| BcnI | CCSGG | 1 cut(s) | 1809 |
| BcoDI | GTCTC | 4 cut(s) | 426, 970, 1713, 2342 |
| BfaI | CTAG | 3 cut(s) | 455, 1206, 1371 |
| BfmI | CTRYAG | 5 cut(s) | 73, 183, 207, 415, 915 |
| BfrI | CTTAAG | 1 cut(s) | 1073 |
| BglII | AGATCT | 1 cut(s) | 1080 |
| BisI | GCNGC | 9 cut(s) | 73, 192, 195, 216, 219, 228, 705, 859, 2332 |
| BlsI | GCNGC | 9 cut(s) | 74, 193, 196, 217, 220, 229, 706, 860, 2333 |
| Bme1390I | CCNGG | 3 cut(s) | 671, 1809, 2157 |
| Bme18I | GGWCC | 1 cut(s) | 1202 |
| BmgT120I | GGNCC | 1 cut(s) | 1202 |
| BmiI | GGNNCC | 2 cut(s) | 94, 1450 |
| BmrFI | CCNGG | 3 cut(s) | 671, 1809, 2157 |
| BmsI | GCATC | 6 cut(s) | 151, 631, 754, 870, 2346, 2353 |
| BpiI | GAAGAC | 2 cut(s) | 998, 1819 |
| BpmI | CTGGAG | 1 cut(s) | 1437 |
| Bpu10I | CCTNAGC | 3 cut(s) | 198, 222, 1133 |
| Bpu14I | TTCGAA | 1 cut(s) | 993 |
| BpuEI | CTTGAG | 2 cut(s) | 1325, 2324 |
| BpuMI | CCSGG | 1 cut(s) | 1809 |
| Bsa29I | ATCGAT | 3 cut(s) | 1050, 1558, 1718 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1845 |
| BsaI | GGTCTC | 1 cut(s) | 1713 |
| BsaJI | CCNNGG | 1 cut(s) | 2156 |
| BsaWI | WCCGGW | 1 cut(s) | 722 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 2396, 2426 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 1217 |
| Bse118I | RCCGGY | 2 cut(s) | 722, 836 |
| Bse1I | ACTGG | 1 cut(s) | 1434 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1845 |
| BseBI | CCWGG | 2 cut(s) | 671, 2157 |
| BseCI | ATCGAT | 3 cut(s) | 1050, 1558, 1718 |
| BseDI | CCNNGG | 1 cut(s) | 2156 |
| BseGI | GGATG | 5 cut(s) | 769, 1633, 1846, 2146, 2261 |
| BseJI | GATNNNNATC | 1 cut(s) | 1845 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 1217 |
| BseMII | CTCAG | 7 cut(s) | 189, 213, 837, 1147, 1279, 1496, 2294 |
| BseNI | ACTGG | 1 cut(s) | 1434 |
| BseRI | GAGGAG | 1 cut(s) | 1850 |
| BseSI | GKGCMC | 1 cut(s) | 585 |
| BseXI | GCAGC | 8 cut(s) | 59, 178, 181, 202, 205, 214, 691, 2318 |
| BsgI | GTGCAG | 2 cut(s) | 1944, 2187 |
| Bsh1236I | CGCG | 1 cut(s) | 1788 |
| BshFI | GGCC | 3 cut(s) | 840, 1653, 2148 |
| BshTI | ACCGGT | 1 cut(s) | 722 |
| BshVI | ATCGAT | 3 cut(s) | 1050, 1558, 1718 |
| BsiHKAI | GWGCWC | 2 cut(s) | 1502, 2241 |
| BsiSI | CCGG | 3 cut(s) | 723, 837, 1809 |
| BslFI | GGGAC | 2 cut(s) | 67, 772 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 1217 |
| BsmAI | GTCTC | 4 cut(s) | 426, 970, 1713, 2342 |
| BsmBI | CGTCTC | 1 cut(s) | 426 |
| BsmFI | GGGAC | 2 cut(s) | 67, 772 |
| BsmI | GAATGC | 1 cut(s) | 1422 |
| BsnI | GGCC | 3 cut(s) | 840, 1653, 2148 |
| Bso31I | GGTCTC | 1 cut(s) | 1713 |
| Bsp119I | TTCGAA | 1 cut(s) | 993 |
| Bsp1286I | GDGCHC | 4 cut(s) | 585, 1502, 1809, 2241 |
| Bsp1407I | TGTACA | 1 cut(s) | 63 |
| Bsp68I | TCGCGA | 1 cut(s) | 1788 |
| BspACI | CCGC | 2 cut(s) | 349, 859 |
| BspANI | GGCC | 3 cut(s) | 840, 1653, 2148 |
| BspCNI | CTCAG | 7 cut(s) | 190, 214, 836, 1146, 1278, 1497, 2293 |
| BspDI | ATCGAT | 3 cut(s) | 1050, 1558, 1718 |
| BspFNI | CGCG | 1 cut(s) | 1788 |
| BspLI | GGNNCC | 2 cut(s) | 94, 1450 |
| BspMAI | CTGCAG | 3 cut(s) | 77, 187, 211 |
| BspPI | GGATC | 4 cut(s) | 1623, 1926, 2167, 2253 |
| BspQI | GCTCTTC | 2 cut(s) | 1335, 1797 |
| BspT104I | TTCGAA | 1 cut(s) | 993 |
| BspTI | CTTAAG | 1 cut(s) | 1073 |
| BspTNI | GGTCTC | 1 cut(s) | 1713 |
| BsrFI | RCCGGY | 2 cut(s) | 722, 836 |
| BsrGI | TGTACA | 1 cut(s) | 63 |
| BsrI | ACTGG | 1 cut(s) | 1434 |
| BssAI | RCCGGY | 2 cut(s) | 722, 836 |
| BssECI | CCNNGG | 1 cut(s) | 2156 |
| Bst2UI | CCWGG | 2 cut(s) | 671, 2157 |
| Bst4CI | ACNGT | 4 cut(s) | 133, 677, 916, 2000 |
| Bst6I | CTCTTC | 3 cut(s) | 1335, 1797, 2034 |
| BstAFI | CTTAAG | 1 cut(s) | 1073 |
| BstAPI | GCANNNNNTGC | 3 cut(s) | 191, 215, 2441 |
| BstAUI | TGTACA | 1 cut(s) | 63 |
| BstBI | TTCGAA | 1 cut(s) | 993 |
| BstC8I | GCNNGC | 2 cut(s) | 1600, 2446 |
| BstDEI | CTNAG | 7 cut(s) | 198, 222, 823, 1133, 1265, 1505, 2280 |
| BstF5I | GGATG | 5 cut(s) | 769, 1633, 1846, 2146, 2261 |
| BstFNI | CGCG | 1 cut(s) | 1788 |
| BstHHI | GCGC | 2 cut(s) | 72, 1576 |
| BstMAI | GTCTC | 4 cut(s) | 426, 970, 1713, 2342 |
| BstNI | CCWGG | 2 cut(s) | 671, 2157 |
| BstNSI | RCATGY | 2 cut(s) | 70, 1602 |
| BstSCI | CCNGG | 3 cut(s) | 669, 1807, 2155 |
| BstSFI | CTRYAG | 5 cut(s) | 73, 183, 207, 415, 915 |
| BstSLI | GKGCMC | 1 cut(s) | 585 |
| BstUI | CGCG | 1 cut(s) | 1788 |
| BstV1I | GCAGC | 8 cut(s) | 59, 178, 181, 202, 205, 214, 691, 2318 |
| BstV2I | GAAGAC | 2 cut(s) | 998, 1819 |
| BstX2I | RGATCY | 2 cut(s) | 1080, 2245 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 1661, 2156 |
| BstYI | RGATCY | 2 cut(s) | 1080, 2245 |
| Bsu15I | ATCGAT | 3 cut(s) | 1050, 1558, 1718 |
| BsuRI | GGCC | 3 cut(s) | 840, 1653, 2148 |
| BsuTUI | ATCGAT | 3 cut(s) | 1050, 1558, 1718 |
| BtgZI | GCGATG | 2 cut(s) | 28, 1236 |
| BtsCI | GGATG | 5 cut(s) | 769, 1633, 1846, 2146, 2261 |
| BtsI | GCAGTG | 1 cut(s) | 2398 |
| BtsIMutI | CAGTG | 5 cut(s) | 912, 1170, 1427, 1502, 2398 |
| BtuMI | TCGCGA | 1 cut(s) | 1788 |
| Cac8I | GCNNGC | 2 cut(s) | 1600, 2446 |
| CaiI | CAGNNNCTG | 2 cut(s) | 191, 215 |
| CfoI | GCGC | 2 cut(s) | 72, 1576 |
| Cfr10I | RCCGGY | 2 cut(s) | 722, 836 |
| Cfr13I | GGNCC | 1 cut(s) | 1202 |
| ClaI | ATCGAT | 3 cut(s) | 1050, 1558, 1718 |
| CseI | GACGC | 3 cut(s) | 453, 1334, 1824 |
| Csp6I | GTAC | 4 cut(s) | 64, 1140, 1262, 1760 |
| CspAI | ACCGGT | 1 cut(s) | 722 |
| CviAII | CATG | 9 cut(s) | 67, 519, 931, 1349, 1599, 1661, 1751, 1850, 2242 |
| CviQI | GTAC | 4 cut(s) | 64, 1140, 1262, 1760 |
| DdeI | CTNAG | 7 cut(s) | 198, 222, 823, 1133, 1265, 1505, 2280 |
| DraI | TTTAAA | 1 cut(s) | 2290 |
| DraIII | CACNNNGTG | 1 cut(s) | 522 |
| EaeI | YGGCCR | 1 cut(s) | 1651 |
| Eam1104I | CTCTTC | 3 cut(s) | 1335, 1797, 2034 |
| EarI | CTCTTC | 3 cut(s) | 1335, 1797, 2034 |
| Eco24I | GRGCYC | 1 cut(s) | 1809 |
| Eco31I | GGTCTC | 1 cut(s) | 1713 |
| Eco32I | GATATC | 1 cut(s) | 292 |
| Eco47I | GGWCC | 1 cut(s) | 1202 |
| Eco57I | CTGAAG | 1 cut(s) | 443 |
| EcoRI | GAATTC | 1 cut(s) | 2372 |
| EcoRII | CCWGG | 2 cut(s) | 669, 2155 |
| EcoRV | GATATC | 1 cut(s) | 292 |
| EcoT22I | ATGCAT | 4 cut(s) | 646, 1495, 1662, 1752 |
| EcoT38I | GRGCYC | 1 cut(s) | 1809 |
| Esp3I | CGTCTC | 1 cut(s) | 426 |
| FaeI | CATG | 9 cut(s) | 70, 522, 934, 1352, 1602, 1664, 1754, 1853, 2245 |
| FalI | AAGNNNNNCTT | 5 cut(s) | 965, 997, 1067, 1099, 2424 |
| FaqI | GGGAC | 2 cut(s) | 67, 772 |
| FatI | CATG | 9 cut(s) | 66, 518, 930, 1348, 1598, 1660, 1750, 1849, 2241 |
| FauI | CCCGC | 1 cut(s) | 356 |
| FauNDI | CATATG | 1 cut(s) | 2109 |
| FbaI | TGATCA | 1 cut(s) | 486 |
| Fnu4HI | GCNGC | 9 cut(s) | 73, 192, 195, 216, 219, 228, 705, 859, 2332 |
| FokI | GGATG | 5 cut(s) | 776, 1640, 1853, 2153, 2268 |
| FriOI | GRGCYC | 1 cut(s) | 1809 |
| Fsp4HI | GCNGC | 9 cut(s) | 73, 192, 195, 216, 219, 228, 705, 859, 2332 |
| FspBI | CTAG | 3 cut(s) | 455, 1206, 1371 |
| FspI | TGCGCA | 1 cut(s) | 1575 |
| GlaI | GCGC | 2 cut(s) | 71, 1575 |
| GluI | GCNGC | 9 cut(s) | 73, 192, 195, 216, 219, 228, 705, 859, 2332 |
| GsuI | CTGGAG | 1 cut(s) | 1437 |
| HaeIII | GGCC | 3 cut(s) | 840, 1653, 2148 |
| HapII | CCGG | 3 cut(s) | 723, 837, 1809 |
| HgaI | GACGC | 3 cut(s) | 453, 1334, 1824 |
| HhaI | GCGC | 2 cut(s) | 72, 1576 |
| Hin1II | CATG | 9 cut(s) | 70, 522, 934, 1352, 1602, 1664, 1754, 1853, 2245 |
| Hin6I | GCGC | 2 cut(s) | 70, 1574 |
| HinP1I | GCGC | 2 cut(s) | 70, 1574 |
| HpaII | CCGG | 3 cut(s) | 723, 837, 1809 |
| HphI | GGTGA | 3 cut(s) | 293, 496, 700 |
| Hpy188I | TCNGA | 6 cut(s) | 335, 610, 826, 1033, 1544, 1729 |
| HpyAV | CCTTC | 1 cut(s) | 1111 |
| HpyCH4III | ACNGT | 4 cut(s) | 133, 677, 916, 2000 |
| HpyCH4IV | ACGT | 3 cut(s) | 664, 814, 1538 |
| HpyF3I | CTNAG | 7 cut(s) | 198, 222, 823, 1133, 1265, 1505, 2280 |
| HpySE526I | ACGT | 3 cut(s) | 664, 814, 1538 |
| Hsp92II | CATG | 9 cut(s) | 70, 522, 934, 1352, 1602, 1664, 1754, 1853, 2245 |
| HspAI | GCGC | 2 cut(s) | 70, 1574 |
| Ksp22I | TGATCA | 1 cut(s) | 486 |
| LguI | GCTCTTC | 2 cut(s) | 1335, 1797 |
| LmnI | GCTCC | 1 cut(s) | 1257 |
| Lsp1109I | GCAGC | 8 cut(s) | 59, 178, 181, 202, 205, 214, 691, 2318 |
| LweI | GCATC | 6 cut(s) | 151, 631, 754, 870, 2346, 2353 |
| MaeI | CTAG | 3 cut(s) | 455, 1206, 1371 |
| MaeII | ACGT | 3 cut(s) | 664, 814, 1538 |
| MaeIII | GTNAC | 4 cut(s) | 1168, 1240, 2125, 2183 |
| MfeI | CAATTG | 1 cut(s) | 1055 |
| MflI | RGATCY | 2 cut(s) | 1080, 2245 |
| MhlI | GDGCHC | 4 cut(s) | 585, 1502, 1809, 2241 |
| MlsI | TGGCCA | 1 cut(s) | 1653 |
| MluNI | TGGCCA | 1 cut(s) | 1653 |
| MlyI | GAGTC | 3 cut(s) | 49, 972, 2233 |
| MmeI | TCCRAC | 4 cut(s) | 922, 1180, 1258, 2200 |
| Mox20I | TGGCCA | 1 cut(s) | 1653 |
| Mph1103I | ATGCAT | 4 cut(s) | 646, 1495, 1662, 1752 |
| MroXI | GAANNNNTTC | 3 cut(s) | 1527, 1782, 1881 |
| MscI | TGGCCA | 1 cut(s) | 1653 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1745 |
| Msp20I | TGGCCA | 1 cut(s) | 1653 |
| MspCI | CTTAAG | 1 cut(s) | 1073 |
| MspI | CCGG | 3 cut(s) | 723, 837, 1809 |
| MspR9I | CCNGG | 3 cut(s) | 671, 1809, 2157 |
| MunI | CAATTG | 1 cut(s) | 1055 |
| Mva1269I | GAATGC | 1 cut(s) | 1422 |
| MvaI | CCWGG | 2 cut(s) | 671, 2157 |
| MvnI | CGCG | 1 cut(s) | 1788 |
| NciI | CCSGG | 1 cut(s) | 1809 |
| NdeI | CATATG | 1 cut(s) | 2109 |
| NlaIII | CATG | 9 cut(s) | 70, 522, 934, 1352, 1602, 1664, 1754, 1853, 2245 |
| NlaIV | GGNNCC | 2 cut(s) | 94, 1450 |
| NmuCI | GTSAC | 2 cut(s) | 1168, 2125 |
| NruI | TCGCGA | 1 cut(s) | 1788 |
| NsbI | TGCGCA | 1 cut(s) | 1575 |
| NsiI | ATGCAT | 4 cut(s) | 646, 1495, 1662, 1752 |
| NspI | RCATGY | 2 cut(s) | 70, 1602 |
| NspV | TTCGAA | 1 cut(s) | 993 |
| PaeI | GCATGC | 1 cut(s) | 1602 |
| PciSI | GCTCTTC | 2 cut(s) | 1335, 1797 |
| PctI | GAATGC | 1 cut(s) | 1422 |
| PdmI | GAANNNNTTC | 3 cut(s) | 1527, 1782, 1881 |
| PfeI | GAWTC | 7 cut(s) | 875, 995, 1047, 1109, 1175, 1724, 2152 |
| PflFI | GACNNNGTC | 2 cut(s) | 1206, 1818 |
| PfoI | TCCNGGA | 1 cut(s) | 669 |
| PinAI | ACCGGT | 1 cut(s) | 722 |
| PkrI | GCNGC | 9 cut(s) | 74, 193, 196, 217, 220, 229, 706, 860, 2333 |
| PleI | GAGTC | 3 cut(s) | 49, 972, 2232 |
| PpsI | GAGTC | 3 cut(s) | 49, 972, 2232 |
| PshBI | ATTAAT | 1 cut(s) | 891 |
| PsiI | TTATAA | 1 cut(s) | 636 |
| Psp1406I | AACGTT | 1 cut(s) | 664 |
| Psp6I | CCWGG | 2 cut(s) | 669, 2155 |
| PspGI | CCWGG | 2 cut(s) | 669, 2155 |
| PspN4I | GGNNCC | 2 cut(s) | 94, 1450 |
| PspPI | GGNCC | 1 cut(s) | 1202 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 1245, 1277 |
| PstI | CTGCAG | 3 cut(s) | 77, 187, 211 |
| PstNI | CAGNNNCTG | 2 cut(s) | 191, 215 |
| PsuI | RGATCY | 2 cut(s) | 1080, 2245 |
| PsyI | GACNNNGTC | 2 cut(s) | 1206, 1818 |
| RruI | TCGCGA | 1 cut(s) | 1788 |
| RsaI | GTAC | 4 cut(s) | 65, 1141, 1263, 1761 |
| RsaNI | GTAC | 4 cut(s) | 64, 1140, 1262, 1760 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1745 |
| SapI | GCTCTTC | 2 cut(s) | 1335, 1797 |
| SatI | GCNGC | 9 cut(s) | 73, 192, 195, 216, 219, 228, 705, 859, 2332 |
| Sau96I | GGNCC | 1 cut(s) | 1202 |
| SchI | GAGTC | 3 cut(s) | 49, 972, 2233 |
| ScrFI | CCNGG | 3 cut(s) | 671, 1809, 2157 |
| SduI | GDGCHC | 4 cut(s) | 585, 1502, 1809, 2241 |
| SfaNI | GCATC | 6 cut(s) | 151, 631, 754, 870, 2346, 2353 |
| SfcI | CTRYAG | 5 cut(s) | 73, 183, 207, 415, 915 |
| SfuI | TTCGAA | 1 cut(s) | 993 |
| SinI | GGWCC | 1 cut(s) | 1202 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1745 |
| SmlI | CTYRAG | 3 cut(s) | 1073, 1304, 2339 |
| SmoI | CTYRAG | 3 cut(s) | 1073, 1304, 2339 |
| SphI | GCATGC | 1 cut(s) | 1602 |
| SsiI | CCGC | 2 cut(s) | 349, 859 |
| SspI | AATATT | 2 cut(s) | 1992, 2368 |
| SspMI | CTAG | 3 cut(s) | 455, 1206, 1371 |
| StyD4I | CCNGG | 3 cut(s) | 669, 1807, 2155 |
| TaaI | ACNGT | 4 cut(s) | 133, 677, 916, 2000 |
| TaiI | ACGT | 3 cut(s) | 667, 817, 1541 |
| TatI | WGTACW | 1 cut(s) | 63 |
| TauI | GCSGC | 1 cut(s) | 861 |
| TfiI | GAWTC | 7 cut(s) | 875, 995, 1047, 1109, 1175, 1724, 2152 |
| TscAI | CASTG | 5 cut(s) | 919, 1177, 1434, 1509, 2398 |
| TseFI | GTSAC | 2 cut(s) | 1168, 2125 |
| TseI | GCWGC | 8 cut(s) | 72, 191, 194, 215, 218, 227, 704, 2331 |
| Tsp45I | GTSAC | 2 cut(s) | 1168, 2125 |
| TspDTI | ATGAA | 9 cut(s) | 7, 362, 763, 1093, 1337, 1536, 1595, 1819, 2096 |
| TspGWI | ACGGA | 4 cut(s) | 776, 1270, 1688, 1917 |
| TspRI | CASTG | 5 cut(s) | 919, 1177, 1434, 1509, 2398 |
| Tth111I | GACNNNGTC | 2 cut(s) | 1206, 1818 |
| Vha464I | CTTAAG | 1 cut(s) | 1073 |
| VpaK11BI | GGWCC | 1 cut(s) | 1202 |
| VspI | ATTAAT | 1 cut(s) | 891 |
| XapI | RAATTY | 6 cut(s) | 355, 1440, 1527, 2078, 2274, 2372 |
| XceI | RCATGY | 2 cut(s) | 70, 1602 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1661 |
| XmnI | GAANNNNTTC | 3 cut(s) | 1527, 1782, 1881 |
| XspI | CTAG | 3 cut(s) | 455, 1206, 1371 |
| Zsp2I | ATGCAT | 4 cut(s) | 646, 1495, 1662, 1752 |