Disease resistance protein (TIR-NBS-LRR class)
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| TIR | PF01582 | 12 - 192 | 2.5e-51 | TIR domain |
| TIR_2 | PF13676 | 15 - 110 | 5.1e-15 | TIR domain |
| AAA_16 | PF13191 | 191 - 309 | 1.4e-06 | AAA ATPase domain |
| NB-ARC | PF00931 | 196 - 373 | 1.1e-16 | NB-ARC domain |
| WHD_ROQ1 | PF23282 | 442 - 512 | 5.5e-19 | Disease resistance protein Roq1-like, winged-helix domain |
| LRR_14 | PF23598 | 719 - 832 | 3.1e-09 | Leucine-rich repeat region |
| LRR_14 | PF23598 | 821 - 904 | 1.6e-06 | Leucine-rich repeat region |
| LRR_13 | PF23286 | 824 - 910 | 1.2e-08 | Disease resistance protein RPS4B-like, leucine-rich repeats |
| C-JID | PF20160 | 1059 - 1194 | 9.7e-12 | C-JID domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 1001, 1782 |
| AatII | GACGTC | 1 cut(s) | 45 |
| AbsI | CCTCGAGG | 1 cut(s) | 3422 |
| Acc65I | GGTACC | 2 cut(s) | 342, 2590 |
| AccB1I | GGYRCC | 2 cut(s) | 342, 2590 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 3155 |
| AccII | CGCG | 3 cut(s) | 73, 1530, 1644 |
| AciI | CCGC | 4 cut(s) | 604, 1528, 1644, 2423 |
| AclI | AACGTT | 1 cut(s) | 2688 |
| AclWI | GGATC | 6 cut(s) | 1082, 1652, 3140, 3229, 3456, 3597 |
| AcuI | CTGAAG | 4 cut(s) | 1088, 2292, 2501, 3020 |
| AcvI | CACGTG | 1 cut(s) | 1412 |
| AcyI | GRCGYC | 1 cut(s) | 42 |
| AdeI | CACNNNGTG | 2 cut(s) | 246, 1297 |
| AfaI | GTAC | 8 cut(s) | 270, 344, 556, 901, 1571, 2421, 2592, 3458 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 1372, 3155, 3451, 3586 |
| AflII | CTTAAG | 2 cut(s) | 1835, 1987 |
| AhlI | ACTAGT | 1 cut(s) | 3641 |
| AjnI | CCWGG | 3 cut(s) | 408, 1549, 3407 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 954, 986 |
| Alw21I | GWGCWC | 1 cut(s) | 2204 |
| Alw26I | GTCTC | 6 cut(s) | 119, 784, 1461, 1890, 1996, 2301 |
| AlwI | GGATC | 6 cut(s) | 1082, 1652, 3140, 3229, 3456, 3597 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1616 |
| Ama87I | CYCGRG | 3 cut(s) | 1008, 1575, 3422 |
| AoxI | GGCC | 5 cut(s) | 765, 1547, 2017, 2815, 3418 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 762, 794 |
| AseI | ATTAAT | 1 cut(s) | 165 |
| Asp700I | GAANNNNTTC | 5 cut(s) | 630, 1101, 1271, 1344, 1384 |
| Asp718I | GGTACC | 2 cut(s) | 342, 2590 |
| AspA2I | CCTAGG | 1 cut(s) | 2363 |
| AspLEI | GCGC | 3 cut(s) | 75, 1986, 2937 |
| AspS9I | GGNCC | 4 cut(s) | 406, 940, 1051, 1547 |
| AsuC2I | CCSGG | 2 cut(s) | 1690, 3180 |
| AsuHPI | GGTGA | 4 cut(s) | 3155, 3434, 3559, 3689 |
| AsuII | TTCGAA | 4 cut(s) | 178, 634, 723, 1118 |
| AsuNHI | GCTAGC | 1 cut(s) | 728 |
| AvaI | CYCGRG | 3 cut(s) | 1008, 1575, 3422 |
| AvaII | GGWCC | 3 cut(s) | 406, 940, 1051 |
| AvrII | CCTAGG | 1 cut(s) | 2363 |
| BaeGI | GKGCMC | 1 cut(s) | 2762 |
| BanI | GGYRCC | 2 cut(s) | 342, 2590 |
| BanII | GRGCYC | 1 cut(s) | 2907 |
| BbrPI | CACGTG | 1 cut(s) | 1412 |
| BbsI | GAAGAC | 2 cut(s) | 2957, 3008 |
| Bbv12I | GWGCWC | 1 cut(s) | 2204 |
| BceAI | ACGGC | 3 cut(s) | 2316, 3131, 3327 |
| BciT130I | CCWGG | 3 cut(s) | 410, 1551, 3409 |
| BclI | TGATCA | 1 cut(s) | 1720 |
| BcnI | CCSGG | 2 cut(s) | 1690, 3180 |
| BcoDI | GTCTC | 6 cut(s) | 119, 784, 1461, 1890, 1996, 2301 |
| BcuI | ACTAGT | 1 cut(s) | 3641 |
| BfaI | CTAG | 9 cut(s) | 729, 1026, 2328, 2364, 2630, 2774, 3629, 3642, 3693 |
| BfmI | CTRYAG | 5 cut(s) | 645, 867, 1143, 2128, 2265 |
| BfoI | RGCGCY | 1 cut(s) | 2938 |
| BfrI | CTTAAG | 2 cut(s) | 1835, 1987 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 1670 |
| BglII | AGATCT | 2 cut(s) | 2083, 3625 |
| BlnI | CCTAGG | 1 cut(s) | 2363 |
| BmcAI | AGTACT | 1 cut(s) | 556 |
| Bme1390I | CCNGG | 5 cut(s) | 410, 1551, 1690, 3180, 3409 |
| Bme18I | GGWCC | 3 cut(s) | 406, 940, 1051 |
| BmeT110I | CYCGRG | 3 cut(s) | 1008, 1575, 3422 |
| BmgT120I | GGNCC | 4 cut(s) | 406, 940, 1051, 1547 |
| BmiI | GGNNCC | 9 cut(s) | 344, 893, 1052, 1540, 1694, 2215, 2450, 2592, 2860 |
| BmrFI | CCNGG | 5 cut(s) | 410, 1551, 1690, 3180, 3409 |
| BmtI | GCTAGC | 1 cut(s) | 732 |
| BpiI | GAAGAC | 2 cut(s) | 2957, 3008 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 2687, 2719 |
| BpmI | CTGGAG | 4 cut(s) | 878, 1572, 1901, 1982 |
| Bpu14I | TTCGAA | 4 cut(s) | 178, 634, 723, 1118 |
| BpuEI | CTTGAG | 8 cut(s) | 167, 535, 1785, 2411, 2573, 2675, 2714, 2891 |
| BpuMI | CCSGG | 2 cut(s) | 1690, 3180 |
| Bsa29I | ATCGAT | 1 cut(s) | 1449 |
| BsaAI | YACGTR | 2 cut(s) | 1412, 2855 |
| BsaBI | GATNNNNATC | 2 cut(s) | 3042, 3624 |
| BsaHI | GRCGYC | 1 cut(s) | 42 |
| BsaI | GGTCTC | 1 cut(s) | 2301 |
| BsaJI | CCNNGG | 4 cut(s) | 1928, 2061, 2363, 3580 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 954, 984 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 1372, 3155, 3451, 3586 |
| Bse1I | ACTGG | 4 cut(s) | 276, 1248, 1621, 3145 |
| Bse3DI | GCAATG | 2 cut(s) | 484, 2834 |
| Bse8I | GATNNNNATC | 2 cut(s) | 3042, 3624 |
| BseBI | CCWGG | 3 cut(s) | 410, 1551, 3409 |
| BseCI | ATCGAT | 1 cut(s) | 1449 |
| BseDI | CCNNGG | 4 cut(s) | 1928, 2061, 2363, 3580 |
| BseJI | GATNNNNATC | 2 cut(s) | 3042, 3624 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 1372, 3155, 3451, 3586 |
| BseMI | GCAATG | 2 cut(s) | 484, 2834 |
| BseMII | CTCAG | 7 cut(s) | 1034, 2183, 2718, 2794, 3133, 3660, 3714 |
| BseNI | ACTGG | 4 cut(s) | 276, 1248, 1621, 3145 |
| BseRI | GAGGAG | 4 cut(s) | 774, 1060, 1788, 2078 |
| BseSI | GKGCMC | 1 cut(s) | 2762 |
| BseYI | CCCAGC | 1 cut(s) | 2452 |
| Bsh1236I | CGCG | 3 cut(s) | 73, 1530, 1644 |
| BshFI | GGCC | 5 cut(s) | 767, 1549, 2019, 2817, 3420 |
| BshNI | GGYRCC | 2 cut(s) | 342, 2590 |
| BshVI | ATCGAT | 1 cut(s) | 1449 |
| BsiHKAI | GWGCWC | 1 cut(s) | 2204 |
| BsiHKCI | CYCGRG | 3 cut(s) | 1008, 1575, 3422 |
| BsiSI | CCGG | 3 cut(s) | 960, 1689, 3179 |
| BslFI | GGGAC | 3 cut(s) | 1064, 2648, 2792 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 1372, 3155, 3451, 3586 |
| BsmAI | GTCTC | 6 cut(s) | 119, 784, 1461, 1890, 1996, 2301 |
| BsmFI | GGGAC | 3 cut(s) | 1064, 2648, 2792 |
| BsmI | GAATGC | 8 cut(s) | 281, 588, 1126, 1182, 1207, 1821, 3052, 3344 |
| BsnI | GGCC | 5 cut(s) | 767, 1549, 2019, 2817, 3420 |
| Bso31I | GGTCTC | 1 cut(s) | 2301 |
| BsoBI | CYCGRG | 3 cut(s) | 1008, 1575, 3422 |
| Bsp119I | TTCGAA | 4 cut(s) | 178, 634, 723, 1118 |
| Bsp1286I | GDGCHC | 3 cut(s) | 2204, 2762, 2907 |
| Bsp1407I | TGTACA | 2 cut(s) | 1569, 3456 |
| BspACI | CCGC | 4 cut(s) | 604, 1528, 1644, 2423 |
| BspANI | GGCC | 5 cut(s) | 767, 1549, 2019, 2817, 3420 |
| BspCNI | CTCAG | 7 cut(s) | 1035, 2184, 2717, 2793, 3132, 3661, 3715 |
| BspDI | ATCGAT | 1 cut(s) | 1449 |
| BspFNI | CGCG | 3 cut(s) | 73, 1530, 1644 |
| BspHI | TCATGA | 1 cut(s) | 3592 |
| BspLI | GGNNCC | 9 cut(s) | 344, 893, 1052, 1540, 1694, 2215, 2450, 2592, 2860 |
| BspMAI | CTGCAG | 1 cut(s) | 2269 |
| BspOI | GCTAGC | 1 cut(s) | 732 |
| BspPI | GGATC | 6 cut(s) | 1082, 1652, 3140, 3229, 3456, 3597 |
| BspQI | GCTCTTC | 1 cut(s) | 1115 |
| BspT104I | TTCGAA | 4 cut(s) | 178, 634, 723, 1118 |
| BspT107I | GGYRCC | 2 cut(s) | 342, 2590 |
| BspTI | CTTAAG | 2 cut(s) | 1835, 1987 |
| BspTNI | GGTCTC | 1 cut(s) | 2301 |
| BsrDI | GCAATG | 2 cut(s) | 484, 2834 |
| BsrGI | TGTACA | 2 cut(s) | 1569, 3456 |
| BsrI | ACTGG | 4 cut(s) | 276, 1248, 1621, 3145 |
| BssECI | CCNNGG | 4 cut(s) | 1928, 2061, 2363, 3580 |
| BssNI | GRCGYC | 1 cut(s) | 42 |
| BssT1I | CCWWGG | 3 cut(s) | 1928, 2363, 3580 |
| Bst2UI | CCWGG | 3 cut(s) | 410, 1551, 3409 |
| Bst4CI | ACNGT | 2 cut(s) | 1778, 3007 |
| Bst6I | CTCTTC | 7 cut(s) | 16, 180, 718, 1107, 1115, 1615, 1893 |
| BstACI | GRCGYC | 1 cut(s) | 42 |
| BstAFI | CTTAAG | 2 cut(s) | 1835, 1987 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 601, 1406 |
| BstAUI | TGTACA | 2 cut(s) | 1569, 3456 |
| BstBAI | YACGTR | 2 cut(s) | 1412, 2855 |
| BstBI | TTCGAA | 4 cut(s) | 178, 634, 723, 1118 |
| BstC8I | GCNNGC | 5 cut(s) | 730, 1180, 2338, 2458, 2933 |
| BstFNI | CGCG | 3 cut(s) | 73, 1530, 1644 |
| BstH2I | RGCGCY | 1 cut(s) | 2938 |
| BstHHI | GCGC | 3 cut(s) | 75, 1986, 2937 |
| BstMAI | GTCTC | 6 cut(s) | 119, 784, 1461, 1890, 1996, 2301 |
| BstNI | CCWGG | 3 cut(s) | 410, 1551, 3409 |
| BstSCI | CCNGG | 5 cut(s) | 408, 1549, 1688, 3178, 3407 |
| BstSFI | CTRYAG | 5 cut(s) | 645, 867, 1143, 2128, 2265 |
| BstSLI | GKGCMC | 1 cut(s) | 2762 |
| BstUI | CGCG | 3 cut(s) | 73, 1530, 1644 |
| BstV2I | GAAGAC | 2 cut(s) | 2957, 3008 |
| BstX2I | RGATCY | 4 cut(s) | 2083, 3221, 3461, 3625 |
| BstYI | RGATCY | 4 cut(s) | 2083, 3221, 3461, 3625 |
| Bsu15I | ATCGAT | 1 cut(s) | 1449 |
| BsuRI | GGCC | 5 cut(s) | 767, 1549, 2019, 2817, 3420 |
| BsuTUI | ATCGAT | 1 cut(s) | 1449 |
| BtsIMutI | CAGTG | 4 cut(s) | 1716, 2754, 2788, 2996 |
| Cac8I | GCNNGC | 5 cut(s) | 730, 1180, 2338, 2458, 2933 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1616 |
| CciI | TCATGA | 1 cut(s) | 3592 |
| CfoI | GCGC | 3 cut(s) | 75, 1986, 2937 |
| Cfr13I | GGNCC | 4 cut(s) | 406, 940, 1051, 1547 |
| ClaI | ATCGAT | 1 cut(s) | 1449 |
| CseI | GACGC | 1 cut(s) | 2886 |
| CsiI | ACCWGGT | 1 cut(s) | 408 |
| Csp6I | GTAC | 8 cut(s) | 269, 343, 555, 900, 1570, 2420, 2591, 3457 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 2958, 2993 |
| CviQI | GTAC | 8 cut(s) | 269, 343, 555, 900, 1570, 2420, 2591, 3457 |
| DraI | TTTAAA | 5 cut(s) | 108, 1155, 2122, 2256, 2685 |
| DraIII | CACNNNGTG | 2 cut(s) | 246, 1297 |
| Eam1104I | CTCTTC | 7 cut(s) | 16, 180, 718, 1107, 1115, 1615, 1893 |
| EarI | CTCTTC | 7 cut(s) | 16, 180, 718, 1107, 1115, 1615, 1893 |
| Eco130I | CCWWGG | 3 cut(s) | 1928, 2363, 3580 |
| Eco24I | GRGCYC | 1 cut(s) | 2907 |
| Eco31I | GGTCTC | 1 cut(s) | 2301 |
| Eco32I | GATATC | 2 cut(s) | 1907, 2637 |
| Eco47I | GGWCC | 3 cut(s) | 406, 940, 1051 |
| Eco57I | CTGAAG | 4 cut(s) | 1088, 2292, 2501, 3020 |
| Eco72I | CACGTG | 1 cut(s) | 1412 |
| Eco88I | CYCGRG | 3 cut(s) | 1008, 1575, 3422 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1547 |
| EcoRI | GAATTC | 1 cut(s) | 636 |
| EcoRII | CCWGG | 3 cut(s) | 408, 1549, 3407 |
| EcoRV | GATATC | 2 cut(s) | 1907, 2637 |
| EcoT14I | CCWWGG | 3 cut(s) | 1928, 2363, 3580 |
| EcoT22I | ATGCAT | 3 cut(s) | 1494, 1821, 1924 |
| EcoT38I | GRGCYC | 1 cut(s) | 2907 |
| ErhI | CCWWGG | 3 cut(s) | 1928, 2363, 3580 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 1332, 1364, 3396, 3428, 3673, 3705 |
| FaqI | GGGAC | 3 cut(s) | 1064, 2648, 2792 |
| FauI | CCCGC | 1 cut(s) | 597 |
| FbaI | TGATCA | 1 cut(s) | 1720 |
| FriOI | GRGCYC | 1 cut(s) | 2907 |
| FspBI | CTAG | 9 cut(s) | 729, 1026, 2328, 2364, 2630, 2774, 3629, 3642, 3693 |
| GlaI | GCGC | 3 cut(s) | 74, 1985, 2936 |
| GsaI | CCCAGC | 1 cut(s) | 2456 |
| GsuI | CTGGAG | 4 cut(s) | 878, 1572, 1901, 1982 |
| HaeII | RGCGCY | 1 cut(s) | 2938 |
| HaeIII | GGCC | 5 cut(s) | 767, 1549, 2019, 2817, 3420 |
| HapII | CCGG | 3 cut(s) | 960, 1689, 3179 |
| HgaI | GACGC | 1 cut(s) | 2886 |
| HhaI | GCGC | 3 cut(s) | 75, 1986, 2937 |
| Hin1I | GRCGYC | 1 cut(s) | 42 |
| Hin6I | GCGC | 3 cut(s) | 73, 1984, 2935 |
| HinP1I | GCGC | 3 cut(s) | 73, 1984, 2935 |
| HincII | GTYRAC | 2 cut(s) | 1755, 1794 |
| HindII | GTYRAC | 2 cut(s) | 1755, 1794 |
| HindIII | AAGCTT | 2 cut(s) | 2174, 3239 |
| HpaII | CCGG | 3 cut(s) | 960, 1689, 3179 |
| HphI | GGTGA | 4 cut(s) | 3155, 3434, 3559, 3689 |
| Hpy166II | GTNNAC | 9 cut(s) | 1572, 1716, 1755, 1794, 1809, 2567, 3457, 3495, 3746 |
| Hpy8I | GTNNAC | 9 cut(s) | 1572, 1716, 1755, 1794, 1809, 2567, 3457, 3495, 3746 |
| HpyAV | CCTTC | 8 cut(s) | 388, 1777, 2160, 2228, 2292, 2476, 2948, 3476 |
| HpyCH4III | ACNGT | 2 cut(s) | 1778, 3007 |
| HpyCH4IV | ACGT | 7 cut(s) | 42, 1384, 1411, 1785, 2688, 2854, 2893 |
| HpySE526I | ACGT | 7 cut(s) | 42, 1384, 1411, 1785, 2688, 2854, 2893 |
| Hsp92I | GRCGYC | 1 cut(s) | 42 |
| HspAI | GCGC | 3 cut(s) | 73, 1984, 2935 |
| KpnI | GGTACC | 2 cut(s) | 346, 2594 |
| Ksp22I | TGATCA | 1 cut(s) | 1720 |
| LguI | GCTCTTC | 1 cut(s) | 1115 |
| LmnI | GCTCC | 7 cut(s) | 897, 1129, 1692, 2065, 2454, 2961, 3653 |
| MabI | ACCWGGT | 1 cut(s) | 408 |
| MaeI | CTAG | 9 cut(s) | 729, 1026, 2328, 2364, 2630, 2774, 3629, 3642, 3693 |
| MaeII | ACGT | 7 cut(s) | 42, 1384, 1411, 1785, 2688, 2854, 2893 |
| MaeIII | GTNAC | 6 cut(s) | 330, 1310, 2707, 2924, 3163, 3322 |
| MfeI | CAATTG | 2 cut(s) | 186, 2792 |
| MflI | RGATCY | 4 cut(s) | 2083, 3221, 3461, 3625 |
| MhlI | GDGCHC | 3 cut(s) | 2204, 2762, 2907 |
| MlyI | GAGTC | 7 cut(s) | 702, 868, 1789, 1892, 3360, 3674, 3680 |
| MmeI | TCCRAC | 2 cut(s) | 2906, 2993 |
| Mph1103I | ATGCAT | 3 cut(s) | 1494, 1821, 1924 |
| MroXI | GAANNNNTTC | 5 cut(s) | 630, 1101, 1271, 1344, 1384 |
| MslI | CAYNNNNRTG | 6 cut(s) | 96, 1451, 1814, 1863, 3331, 3545 |
| MspA1I | CMGCKG | 3 cut(s) | 2270, 3207, 3293 |
| MspCI | CTTAAG | 2 cut(s) | 1835, 1987 |
| MspI | CCGG | 3 cut(s) | 960, 1689, 3179 |
| MspR9I | CCNGG | 5 cut(s) | 410, 1551, 1690, 3180, 3409 |
| MunI | CAATTG | 2 cut(s) | 186, 2792 |
| Mva1269I | GAATGC | 8 cut(s) | 281, 588, 1126, 1182, 1207, 1821, 3052, 3344 |
| MvaI | CCWGG | 3 cut(s) | 410, 1551, 3409 |
| MvnI | CGCG | 3 cut(s) | 73, 1530, 1644 |
| NciI | CCSGG | 2 cut(s) | 1690, 3180 |
| NheI | GCTAGC | 1 cut(s) | 728 |
| NlaIV | GGNNCC | 9 cut(s) | 344, 893, 1052, 1540, 1694, 2215, 2450, 2592, 2860 |
| NmuCI | GTSAC | 2 cut(s) | 330, 3322 |
| NsiI | ATGCAT | 3 cut(s) | 1494, 1821, 1924 |
| NspV | TTCGAA | 4 cut(s) | 178, 634, 723, 1118 |
| PaeR7I | CTCGAG | 3 cut(s) | 1008, 1575, 3422 |
| PagI | TCATGA | 1 cut(s) | 3592 |
| PciSI | GCTCTTC | 1 cut(s) | 1115 |
| PctI | GAATGC | 8 cut(s) | 281, 588, 1126, 1182, 1207, 1821, 3052, 3344 |
| PdmI | GAANNNNTTC | 5 cut(s) | 630, 1101, 1271, 1344, 1384 |
| PflFI | GACNNNGTC | 1 cut(s) | 3007 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 3155 |
| PleI | GAGTC | 7 cut(s) | 702, 867, 1789, 1891, 3360, 3673, 3679 |
| PmaCI | CACGTG | 1 cut(s) | 1412 |
| PmlI | CACGTG | 1 cut(s) | 1412 |
| PpsI | GAGTC | 7 cut(s) | 702, 867, 1789, 1891, 3360, 3673, 3679 |
| Ppu21I | YACGTR | 2 cut(s) | 1412, 2855 |
| PshBI | ATTAAT | 1 cut(s) | 165 |
| PsiI | TTATAA | 2 cut(s) | 1001, 1782 |
| Psp1406I | AACGTT | 1 cut(s) | 2688 |
| Psp6I | CCWGG | 3 cut(s) | 408, 1549, 3407 |
| PspCI | CACGTG | 1 cut(s) | 1412 |
| PspFI | CCCAGC | 1 cut(s) | 2452 |
| PspGI | CCWGG | 3 cut(s) | 408, 1549, 3407 |
| PspN4I | GGNNCC | 9 cut(s) | 344, 893, 1052, 1540, 1694, 2215, 2450, 2592, 2860 |
| PspPI | GGNCC | 4 cut(s) | 406, 940, 1051, 1547 |
| PspXI | VCTCGAGB | 1 cut(s) | 3422 |
| PstI | CTGCAG | 1 cut(s) | 2269 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1616 |
| PsuI | RGATCY | 4 cut(s) | 2083, 3221, 3461, 3625 |
| PsyI | GACNNNGTC | 1 cut(s) | 3007 |
| PvuII | CAGCTG | 3 cut(s) | 2270, 3207, 3293 |
| RsaI | GTAC | 8 cut(s) | 270, 344, 556, 901, 1571, 2421, 2592, 3458 |
| RsaNI | GTAC | 8 cut(s) | 269, 343, 555, 900, 1570, 2420, 2591, 3457 |
| RseI | CAYNNNNRTG | 6 cut(s) | 96, 1451, 1814, 1863, 3331, 3545 |
| SapI | GCTCTTC | 1 cut(s) | 1115 |
| Sau96I | GGNCC | 4 cut(s) | 406, 940, 1051, 1547 |
| ScaI | AGTACT | 1 cut(s) | 556 |
| SchI | GAGTC | 7 cut(s) | 702, 868, 1789, 1892, 3360, 3674, 3680 |
| ScrFI | CCNGG | 5 cut(s) | 410, 1551, 1690, 3180, 3409 |
| SduI | GDGCHC | 3 cut(s) | 2204, 2762, 2907 |
| SexAI | ACCWGGT | 1 cut(s) | 408 |
| SfcI | CTRYAG | 5 cut(s) | 645, 867, 1143, 2128, 2265 |
| Sfr274I | CTCGAG | 3 cut(s) | 1008, 1575, 3422 |
| SfuI | TTCGAA | 4 cut(s) | 178, 634, 723, 1118 |
| SinI | GGWCC | 3 cut(s) | 406, 940, 1051 |
| SlaI | CTCGAG | 3 cut(s) | 1008, 1575, 3422 |
| SmiMI | CAYNNNNRTG | 6 cut(s) | 96, 1451, 1814, 1863, 3331, 3545 |
| SpeI | ACTAGT | 1 cut(s) | 3641 |
| SsiI | CCGC | 4 cut(s) | 604, 1528, 1644, 2423 |
| SspI | AATATT | 3 cut(s) | 1441, 1683, 2209 |
| SspMI | CTAG | 9 cut(s) | 729, 1026, 2328, 2364, 2630, 2774, 3629, 3642, 3693 |
| StyD4I | CCNGG | 5 cut(s) | 408, 1549, 1688, 3178, 3407 |
| StyI | CCWWGG | 3 cut(s) | 1928, 2363, 3580 |
| TaaI | ACNGT | 2 cut(s) | 1778, 3007 |
| TaiI | ACGT | 7 cut(s) | 45, 1387, 1414, 1788, 2691, 2857, 2896 |
| TatI | WGTACW | 4 cut(s) | 268, 554, 1569, 3456 |
| TscAI | CASTG | 4 cut(s) | 1723, 2754, 2788, 3003 |
| TseFI | GTSAC | 2 cut(s) | 330, 3322 |
| Tsp45I | GTSAC | 2 cut(s) | 330, 3322 |
| TspGWI | ACGGA | 1 cut(s) | 1750 |
| TspRI | CASTG | 4 cut(s) | 1723, 2754, 2788, 3003 |
| Tth111I | GACNNNGTC | 1 cut(s) | 3007 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 3155 |
| Vha464I | CTTAAG | 2 cut(s) | 1835, 1987 |
| VpaK11BI | GGWCC | 3 cut(s) | 406, 940, 1051 |
| VspI | ATTAAT | 1 cut(s) | 165 |
| XbaI | TCTAGA | 2 cut(s) | 2773, 3628 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 247 |
| XhoI | CTCGAG | 3 cut(s) | 1008, 1575, 3422 |
| XmaJI | CCTAGG | 1 cut(s) | 2363 |
| XmnI | GAANNNNTTC | 5 cut(s) | 630, 1101, 1271, 1344, 1384 |
| XspI | CTAG | 9 cut(s) | 729, 1026, 2328, 2364, 2630, 2774, 3629, 3642, 3693 |
| ZraI | GACGTC | 1 cut(s) | 43 |
| ZrmI | AGTACT | 1 cut(s) | 556 |
| Zsp2I | ATGCAT | 3 cut(s) | 1494, 1821, 1924 |