Disease resistance protein (TIR-NBS-LRR class)
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 1585 |
| Acc16I | TGCGCA | 1 cut(s) | 102 |
| Acc36I | ACCTGC | 1 cut(s) | 1585 |
| AccII | CGCG | 2 cut(s) | 366, 1842 |
| AciI | CCGC | 6 cut(s) | 480, 887, 1480, 1509, 1519, 1956 |
| AclI | AACGTT | 1 cut(s) | 1260 |
| AclWI | GGATC | 5 cut(s) | 158, 662, 682, 2138, 2158 |
| AcoI | YGGCCR | 1 cut(s) | 1309 |
| AcsI | RAATTY | 3 cut(s) | 39, 1002, 2478 |
| AcuI | CTGAAG | 4 cut(s) | 899, 960, 2375, 2436 |
| AfaI | GTAC | 1 cut(s) | 177 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 187, 671, 1471, 2147 |
| AflIII | ACRYGT | 1 cut(s) | 172 |
| AjnI | CCWGG | 4 cut(s) | 787, 1638, 1673, 2263 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 1245, 1277 |
| Alw21I | GWGCWC | 3 cut(s) | 246, 1055, 1722 |
| Alw26I | GTCTC | 2 cut(s) | 1281, 1650 |
| AlwI | GGATC | 5 cut(s) | 158, 662, 682, 2138, 2158 |
| Ama87I | CYCGRG | 2 cut(s) | 422, 1898 |
| AoxI | GGCC | 6 cut(s) | 307, 1011, 1309, 1671, 1783, 2487 |
| ApeKI | GCWGC | 6 cut(s) | 200, 203, 951, 995, 2427, 2471 |
| ApoI | RAATTY | 3 cut(s) | 39, 1002, 2478 |
| Asp700I | GAANNNNTTC | 4 cut(s) | 453, 912, 1929, 2388 |
| AspLEI | GCGC | 3 cut(s) | 103, 411, 1887 |
| AspS9I | GGNCC | 4 cut(s) | 785, 1012, 2261, 2488 |
| AsuHPI | GGTGA | 2 cut(s) | 779, 2255 |
| AvaI | CYCGRG | 2 cut(s) | 422, 1898 |
| AvaII | GGWCC | 2 cut(s) | 785, 2261 |
| BalI | TGGCCA | 1 cut(s) | 1311 |
| BauI | CACGAG | 1 cut(s) | 1374 |
| BbsI | GAAGAC | 2 cut(s) | 1350, 1429 |
| Bbv12I | GWGCWC | 3 cut(s) | 246, 1055, 1722 |
| BbvI | GCAGC | 6 cut(s) | 190, 212, 938, 982, 2414, 2458 |
| BccI | CCATC | 2 cut(s) | 673, 2149 |
| BciT130I | CCWGG | 4 cut(s) | 789, 1640, 1675, 2265 |
| BclI | TGATCA | 4 cut(s) | 31, 769, 1429, 2245 |
| BcoDI | GTCTC | 2 cut(s) | 1281, 1650 |
| BfaI | CTAG | 7 cut(s) | 281, 813, 896, 1364, 1757, 2289, 2372 |
| BfmI | CTRYAG | 6 cut(s) | 468, 848, 952, 1944, 2324, 2428 |
| BfuAI | ACCTGC | 1 cut(s) | 1585 |
| BisI | GCNGC | 9 cut(s) | 201, 204, 481, 952, 996, 1509, 1957, 2428, 2472 |
| BlsI | GCNGC | 9 cut(s) | 202, 205, 482, 953, 997, 1510, 1958, 2429, 2473 |
| Bme1390I | CCNGG | 4 cut(s) | 789, 1640, 1675, 2265 |
| Bme18I | GGWCC | 2 cut(s) | 785, 2261 |
| BmeT110I | CYCGRG | 2 cut(s) | 422, 1898 |
| BmgT120I | GGNCC | 4 cut(s) | 785, 1012, 2261, 2488 |
| BmiI | GGNNCC | 1 cut(s) | 1651 |
| BmrFI | CCNGG | 4 cut(s) | 789, 1640, 1675, 2265 |
| BmsI | GCATC | 9 cut(s) | 420, 828, 1034, 1126, 1189, 1216, 1329, 1896, 2304 |
| BpiI | GAAGAC | 2 cut(s) | 1350, 1429 |
| BpmI | CTGGAG | 1 cut(s) | 1636 |
| BpuEI | CTTGAG | 4 cut(s) | 230, 358, 1706, 1834 |
| Bsa29I | ATCGAT | 1 cut(s) | 1542 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1286 |
| BsaJI | CCNNGG | 3 cut(s) | 1008, 1465, 2484 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 187, 671, 1471, 2147 |
| Bse118I | RCCGGY | 1 cut(s) | 1646 |
| Bse1I | ACTGG | 2 cut(s) | 1312, 1494 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1286 |
| BseBI | CCWGG | 4 cut(s) | 789, 1640, 1675, 2265 |
| BseCI | ATCGAT | 1 cut(s) | 1542 |
| BseDI | CCNNGG | 3 cut(s) | 1008, 1465, 2484 |
| BseGI | GGATG | 8 cut(s) | 272, 411, 646, 1204, 1344, 1748, 1887, 2122 |
| BseJI | GATNNNNATC | 1 cut(s) | 1286 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 187, 671, 1471, 2147 |
| BseMII | CTCAG | 1 cut(s) | 1616 |
| BseNI | ACTGG | 2 cut(s) | 1312, 1494 |
| BseRI | GAGGAG | 9 cut(s) | 6, 9, 12, 15, 1404, 1407, 1410, 1413, 1575 |
| BseXI | GCAGC | 6 cut(s) | 190, 212, 938, 982, 2414, 2458 |
| Bsh1236I | CGCG | 2 cut(s) | 366, 1842 |
| BshFI | GGCC | 6 cut(s) | 309, 1013, 1311, 1673, 1785, 2489 |
| BshVI | ATCGAT | 1 cut(s) | 1542 |
| BsiHKAI | GWGCWC | 3 cut(s) | 246, 1055, 1722 |
| BsiHKCI | CYCGRG | 2 cut(s) | 422, 1898 |
| BsiSI | CCGG | 1 cut(s) | 1647 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 187, 671, 1471, 2147 |
| BsmAI | GTCTC | 2 cut(s) | 1281, 1650 |
| BsmI | GAATGC | 3 cut(s) | 119, 374, 1850 |
| BsnI | GGCC | 6 cut(s) | 309, 1013, 1311, 1673, 1785, 2489 |
| BsoBI | CYCGRG | 2 cut(s) | 422, 1898 |
| Bsp1286I | GDGCHC | 3 cut(s) | 246, 1055, 1722 |
| Bsp68I | TCGCGA | 2 cut(s) | 366, 1842 |
| BspACI | CCGC | 6 cut(s) | 480, 887, 1480, 1509, 1519, 1956 |
| BspANI | GGCC | 6 cut(s) | 309, 1013, 1311, 1673, 1785, 2489 |
| BspCNI | CTCAG | 1 cut(s) | 1617 |
| BspDI | ATCGAT | 1 cut(s) | 1542 |
| BspFNI | CGCG | 2 cut(s) | 366, 1842 |
| BspHI | TCATGA | 2 cut(s) | 34, 901 |
| BspLI | GGNNCC | 1 cut(s) | 1651 |
| BspMAI | CTGCAG | 4 cut(s) | 852, 956, 2328, 2432 |
| BspMI | ACCTGC | 1 cut(s) | 1585 |
| BspPI | GGATC | 5 cut(s) | 158, 662, 682, 2138, 2158 |
| BspQI | GCTCTTC | 2 cut(s) | 926, 2402 |
| BsrFI | RCCGGY | 1 cut(s) | 1646 |
| BsrI | ACTGG | 2 cut(s) | 1312, 1494 |
| BssAI | RCCGGY | 1 cut(s) | 1646 |
| BssECI | CCNNGG | 3 cut(s) | 1008, 1465, 2484 |
| BssSI | CACGAG | 1 cut(s) | 1374 |
| BssT1I | CCWWGG | 2 cut(s) | 1008, 2484 |
| Bst2BI | CACGAG | 1 cut(s) | 1374 |
| Bst2UI | CCWGG | 4 cut(s) | 789, 1640, 1675, 2265 |
| Bst4CI | ACNGT | 2 cut(s) | 469, 1945 |
| Bst6I | CTCTTC | 2 cut(s) | 926, 2402 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 847, 2323 |
| BstC8I | GCNNGC | 2 cut(s) | 99, 1648 |
| BstF5I | GGATG | 8 cut(s) | 272, 411, 646, 1204, 1344, 1748, 1887, 2122 |
| BstFNI | CGCG | 2 cut(s) | 366, 1842 |
| BstHHI | GCGC | 3 cut(s) | 103, 411, 1887 |
| BstMAI | GTCTC | 2 cut(s) | 1281, 1650 |
| BstMWI | GCNNNNNNNGC | 9 cut(s) | 306, 415, 847, 1208, 1635, 1679, 1782, 1891, 2323 |
| BstNI | CCWGG | 4 cut(s) | 789, 1640, 1675, 2265 |
| BstNSI | RCATGY | 3 cut(s) | 176, 1233, 1704 |
| BstSCI | CCNGG | 4 cut(s) | 787, 1638, 1673, 2263 |
| BstSFI | CTRYAG | 6 cut(s) | 468, 848, 952, 1944, 2324, 2428 |
| BstUI | CGCG | 2 cut(s) | 366, 1842 |
| BstV1I | GCAGC | 6 cut(s) | 190, 212, 938, 982, 2414, 2458 |
| BstV2I | GAAGAC | 2 cut(s) | 1350, 1429 |
| BstX2I | RGATCY | 1 cut(s) | 163 |
| BstYI | RGATCY | 1 cut(s) | 163 |
| Bsu15I | ATCGAT | 1 cut(s) | 1542 |
| BsuRI | GGCC | 6 cut(s) | 309, 1013, 1311, 1673, 1785, 2489 |
| BsuTUI | ATCGAT | 1 cut(s) | 1542 |
| BtsCI | GGATG | 8 cut(s) | 272, 411, 646, 1204, 1344, 1748, 1887, 2122 |
| BtsI | GCAGTG | 1 cut(s) | 2370 |
| BtsIMutI | CAGTG | 4 cut(s) | 465, 1622, 1941, 2370 |
| BtuMI | TCGCGA | 2 cut(s) | 366, 1842 |
| BveI | ACCTGC | 1 cut(s) | 1585 |
| Cac8I | GCNNGC | 2 cut(s) | 99, 1648 |
| CciI | TCATGA | 2 cut(s) | 34, 901 |
| CfoI | GCGC | 3 cut(s) | 103, 411, 1887 |
| Cfr10I | RCCGGY | 1 cut(s) | 1646 |
| Cfr13I | GGNCC | 4 cut(s) | 785, 1012, 2261, 2488 |
| ClaI | ATCGAT | 1 cut(s) | 1542 |
| CseI | GACGC | 2 cut(s) | 524, 2000 |
| Csp6I | GTAC | 1 cut(s) | 176 |
| CviQI | GTAC | 1 cut(s) | 176 |
| DraI | TTTAAA | 2 cut(s) | 384, 1860 |
| EaeI | YGGCCR | 1 cut(s) | 1309 |
| Eam1104I | CTCTTC | 2 cut(s) | 926, 2402 |
| EarI | CTCTTC | 2 cut(s) | 926, 2402 |
| Eco130I | CCWWGG | 2 cut(s) | 1008, 2484 |
| Eco32I | GATATC | 1 cut(s) | 1284 |
| Eco47I | GGWCC | 2 cut(s) | 785, 2261 |
| Eco57I | CTGAAG | 4 cut(s) | 899, 960, 2375, 2436 |
| Eco88I | CYCGRG | 2 cut(s) | 422, 1898 |
| EcoRI | GAATTC | 2 cut(s) | 1002, 2478 |
| EcoRII | CCWGG | 4 cut(s) | 787, 1638, 1673, 2263 |
| EcoRV | GATATC | 1 cut(s) | 1284 |
| EcoT14I | CCWWGG | 2 cut(s) | 1008, 2484 |
| EcoT22I | ATGCAT | 5 cut(s) | 440, 1141, 1231, 1344, 1916 |
| ErhI | CCWWGG | 2 cut(s) | 1008, 2484 |
| FauI | CCCGC | 1 cut(s) | 1487 |
| FbaI | TGATCA | 4 cut(s) | 31, 769, 1429, 2245 |
| Fnu4HI | GCNGC | 9 cut(s) | 201, 204, 481, 952, 996, 1509, 1957, 2428, 2472 |
| FokI | GGATG | 8 cut(s) | 259, 398, 653, 1211, 1351, 1735, 1874, 2129 |
| Fsp4HI | GCNGC | 9 cut(s) | 201, 204, 481, 952, 996, 1509, 1957, 2428, 2472 |
| FspBI | CTAG | 7 cut(s) | 281, 813, 896, 1364, 1757, 2289, 2372 |
| FspI | TGCGCA | 1 cut(s) | 102 |
| GlaI | GCGC | 3 cut(s) | 102, 410, 1886 |
| GluI | GCNGC | 9 cut(s) | 201, 204, 481, 952, 996, 1509, 1957, 2428, 2472 |
| GsuI | CTGGAG | 1 cut(s) | 1636 |
| HaeIII | GGCC | 6 cut(s) | 309, 1013, 1311, 1673, 1785, 2489 |
| HapII | CCGG | 1 cut(s) | 1647 |
| HgaI | GACGC | 2 cut(s) | 524, 2000 |
| HhaI | GCGC | 3 cut(s) | 103, 411, 1887 |
| Hin6I | GCGC | 3 cut(s) | 101, 409, 1885 |
| HinP1I | GCGC | 3 cut(s) | 101, 409, 1885 |
| HindIII | AAGCTT | 2 cut(s) | 549, 2025 |
| HpaII | CCGG | 1 cut(s) | 1647 |
| HphI | GGTGA | 2 cut(s) | 779, 2255 |
| Hpy166II | GTNNAC | 1 cut(s) | 1305 |
| Hpy188I | TCNGA | 7 cut(s) | 319, 940, 1281, 1466, 1795, 1817, 2416 |
| Hpy8I | GTNNAC | 1 cut(s) | 1305 |
| Hpy99I | CGWCG | 2 cut(s) | 1044, 2520 |
| HpyAV | CCTTC | 5 cut(s) | 177, 631, 1592, 1663, 2107 |
| HpyCH4III | ACNGT | 2 cut(s) | 469, 1945 |
| HpyCH4IV | ACGT | 1 cut(s) | 1260 |
| HpyF10VI | GCNNNNNNNGC | 9 cut(s) | 306, 415, 847, 1208, 1635, 1679, 1782, 1891, 2323 |
| HpySE526I | ACGT | 1 cut(s) | 1260 |
| HspAI | GCGC | 3 cut(s) | 101, 409, 1885 |
| KroI | GCCGGC | 1 cut(s) | 1646 |
| KroNI | GCCGGC | 1 cut(s) | 1648 |
| Ksp22I | TGATCA | 4 cut(s) | 31, 769, 1429, 2245 |
| LguI | GCTCTTC | 2 cut(s) | 926, 2402 |
| LmnI | GCTCC | 1 cut(s) | 1655 |
| Lsp1109I | GCAGC | 6 cut(s) | 190, 212, 938, 982, 2414, 2458 |
| LweI | GCATC | 9 cut(s) | 420, 828, 1034, 1126, 1189, 1216, 1329, 1896, 2304 |
| MaeI | CTAG | 7 cut(s) | 281, 813, 896, 1364, 1757, 2289, 2372 |
| MaeII | ACGT | 1 cut(s) | 1260 |
| MaeIII | GTNAC | 1 cut(s) | 1328 |
| MflI | RGATCY | 1 cut(s) | 163 |
| MhlI | GDGCHC | 3 cut(s) | 246, 1055, 1722 |
| MlsI | TGGCCA | 1 cut(s) | 1311 |
| MluNI | TGGCCA | 1 cut(s) | 1311 |
| MlyI | GAGTC | 9 cut(s) | 338, 370, 434, 525, 1366, 1652, 1814, 1910, 2001 |
| MmeI | TCCRAC | 2 cut(s) | 376, 1852 |
| Mox20I | TGGCCA | 1 cut(s) | 1311 |
| Mph1103I | ATGCAT | 5 cut(s) | 440, 1141, 1231, 1344, 1916 |
| MroNI | GCCGGC | 1 cut(s) | 1646 |
| MroXI | GAANNNNTTC | 4 cut(s) | 453, 912, 1929, 2388 |
| MscI | TGGCCA | 1 cut(s) | 1311 |
| MseI | TTAA | 6 cut(s) | 383, 873, 1017, 1859, 2349, 2493 |
| MslI | CAYNNNNRTG | 4 cut(s) | 433, 1271, 1503, 1909 |
| Msp20I | TGGCCA | 1 cut(s) | 1311 |
| MspA1I | CMGCKG | 3 cut(s) | 203, 951, 2427 |
| MspI | CCGG | 1 cut(s) | 1647 |
| MspR9I | CCNGG | 4 cut(s) | 789, 1640, 1675, 2265 |
| Mva1269I | GAATGC | 3 cut(s) | 119, 374, 1850 |
| MvaI | CCWGG | 4 cut(s) | 789, 1640, 1675, 2265 |
| MvnI | CGCG | 2 cut(s) | 366, 1842 |
| MwoI | GCNNNNNNNGC | 9 cut(s) | 306, 415, 847, 1208, 1635, 1679, 1782, 1891, 2323 |
| NaeI | GCCGGC | 1 cut(s) | 1648 |
| NgoMIV | GCCGGC | 1 cut(s) | 1646 |
| NlaIV | GGNNCC | 1 cut(s) | 1651 |
| NruI | TCGCGA | 2 cut(s) | 366, 1842 |
| NsbI | TGCGCA | 1 cut(s) | 102 |
| NsiI | ATGCAT | 5 cut(s) | 440, 1141, 1231, 1344, 1916 |
| NspI | RCATGY | 3 cut(s) | 176, 1233, 1704 |
| PaeR7I | CTCGAG | 2 cut(s) | 422, 1898 |
| PagI | TCATGA | 2 cut(s) | 34, 901 |
| PaqCI | CACCTGC | 1 cut(s) | 1585 |
| PciI | ACATGT | 1 cut(s) | 172 |
| PciSI | GCTCTTC | 2 cut(s) | 926, 2402 |
| PctI | GAATGC | 3 cut(s) | 119, 374, 1850 |
| PdiI | GCCGGC | 1 cut(s) | 1648 |
| PdmI | GAANNNNTTC | 4 cut(s) | 453, 912, 1929, 2388 |
| PkrI | GCNGC | 9 cut(s) | 202, 205, 482, 953, 997, 1510, 1958, 2429, 2473 |
| PleI | GAGTC | 9 cut(s) | 337, 369, 433, 525, 1366, 1652, 1813, 1909, 2001 |
| PpsI | GAGTC | 9 cut(s) | 337, 369, 433, 525, 1366, 1652, 1813, 1909, 2001 |
| PscI | ACATGT | 1 cut(s) | 172 |
| Psp1406I | AACGTT | 1 cut(s) | 1260 |
| Psp6I | CCWGG | 4 cut(s) | 787, 1638, 1673, 2263 |
| PspGI | CCWGG | 4 cut(s) | 787, 1638, 1673, 2263 |
| PspN4I | GGNNCC | 1 cut(s) | 1651 |
| PspPI | GGNCC | 4 cut(s) | 785, 1012, 2261, 2488 |
| PspXI | VCTCGAGB | 2 cut(s) | 422, 1898 |
| PsrI | GAACNNNNNNTAC | 4 cut(s) | 438, 470, 1914, 1946 |
| PstI | CTGCAG | 4 cut(s) | 852, 956, 2328, 2432 |
| PsuI | RGATCY | 1 cut(s) | 163 |
| PvuII | CAGCTG | 3 cut(s) | 203, 951, 2427 |
| RruI | TCGCGA | 2 cut(s) | 366, 1842 |
| RsaI | GTAC | 1 cut(s) | 177 |
| RsaNI | GTAC | 1 cut(s) | 176 |
| RseI | CAYNNNNRTG | 4 cut(s) | 433, 1271, 1503, 1909 |
| SapI | GCTCTTC | 2 cut(s) | 926, 2402 |
| SaqAI | TTAA | 6 cut(s) | 383, 873, 1017, 1859, 2349, 2493 |
| SatI | GCNGC | 9 cut(s) | 201, 204, 481, 952, 996, 1509, 1957, 2428, 2472 |
| Sau96I | GGNCC | 4 cut(s) | 785, 1012, 2261, 2488 |
| SchI | GAGTC | 9 cut(s) | 338, 370, 434, 525, 1366, 1652, 1814, 1910, 2001 |
| ScrFI | CCNGG | 4 cut(s) | 789, 1640, 1675, 2265 |
| SduI | GDGCHC | 3 cut(s) | 246, 1055, 1722 |
| SfaNI | GCATC | 9 cut(s) | 420, 828, 1034, 1126, 1189, 1216, 1329, 1896, 2304 |
| SfcI | CTRYAG | 6 cut(s) | 468, 848, 952, 1944, 2324, 2428 |
| Sfr274I | CTCGAG | 2 cut(s) | 422, 1898 |
| SinI | GGWCC | 2 cut(s) | 785, 2261 |
| SlaI | CTCGAG | 2 cut(s) | 422, 1898 |
| SmiI | ATTTAAAT | 2 cut(s) | 384, 1860 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 433, 1271, 1503, 1909 |
| SmlI | CTYRAG | 6 cut(s) | 245, 373, 422, 1721, 1849, 1898 |
| SmoI | CTYRAG | 6 cut(s) | 245, 373, 422, 1721, 1849, 1898 |
| SsiI | CCGC | 6 cut(s) | 480, 887, 1480, 1509, 1519, 1956 |
| SspMI | CTAG | 7 cut(s) | 281, 813, 896, 1364, 1757, 2289, 2372 |
| StyD4I | CCNGG | 4 cut(s) | 787, 1638, 1673, 2263 |
| StyI | CCWWGG | 2 cut(s) | 1008, 2484 |
| SwaI | ATTTAAAT | 2 cut(s) | 384, 1860 |
| TaaI | ACNGT | 2 cut(s) | 469, 1945 |
| TaiI | ACGT | 1 cut(s) | 1263 |
| TaqI | TCGA | 7 cut(s) | 423, 1042, 1542, 1587, 1613, 1899, 2518 |
| TauI | GCSGC | 3 cut(s) | 483, 1511, 1959 |
| Tru1I | TTAA | 6 cut(s) | 383, 873, 1017, 1859, 2349, 2493 |
| Tru9I | TTAA | 6 cut(s) | 383, 873, 1017, 1859, 2349, 2493 |
| TscAI | CASTG | 4 cut(s) | 472, 1629, 1948, 2370 |
| TseI | GCWGC | 6 cut(s) | 200, 203, 951, 995, 2427, 2471 |
| TspGWI | ACGGA | 3 cut(s) | 144, 958, 2434 |
| TspRI | CASTG | 4 cut(s) | 472, 1629, 1948, 2370 |
| VpaK11BI | GGWCC | 2 cut(s) | 785, 2261 |
| XapI | RAATTY | 3 cut(s) | 39, 1002, 2478 |
| XceI | RCATGY | 3 cut(s) | 176, 1233, 1704 |
| XhoI | CTCGAG | 2 cut(s) | 422, 1898 |
| XmnI | GAANNNNTTC | 4 cut(s) | 453, 912, 1929, 2388 |
| XspI | CTAG | 7 cut(s) | 281, 813, 896, 1364, 1757, 2289, 2372 |
| Zsp2I | ATGCAT | 5 cut(s) | 440, 1141, 1231, 1344, 1916 |