TMV resistance protein N-like
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| TIR | PF01582 | 15 - 183 | 2.5e-52 | TIR domain |
| TIR_2 | PF13676 | 18 - 124 | 2.5e-12 | TIR domain |
| NB-ARC | PF00931 | 196 - 370 | 9.8e-19 | NB-ARC domain |
| WHD_ROQ1 | PF23282 | 438 - 509 | 3.7e-23 | Disease resistance protein Roq1-like, winged-helix domain |
| LRR_14 | PF23598 | 713 - 890 | 3.3e-08 | Leucine-rich repeat region |
| C-JID | PF20160 | 1054 - 1209 | 4.5e-19 | C-JID domain |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1035 |
| AarI | CACCTGC | 2 cut(s) | 187, 542 |
| Acc36I | ACCTGC | 4 cut(s) | 187, 542, 2547, 2745 |
| AciI | CCGC | 4 cut(s) | 6, 1731, 2293, 3054 |
| AclI | AACGTT | 1 cut(s) | 388 |
| AclWI | GGATC | 6 cut(s) | 320, 862, 1647, 2217, 3012, 3072 |
| AcoI | YGGCCR | 3 cut(s) | 3, 880, 1626 |
| AfeI | AGCGCT | 1 cut(s) | 566 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 851, 889, 2996, 3329, 3579 |
| AflII | CTTAAG | 3 cut(s) | 1076, 1475, 2228 |
| AjiI | CACGTC | 2 cut(s) | 2952, 3125 |
| AjnI | CCWGG | 6 cut(s) | 970, 1540, 1756, 1956, 2119, 3323 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 1993, 2025, 3618, 3650 |
| Alw21I | GWGCWC | 2 cut(s) | 417, 3076 |
| Alw44I | GTGCAC | 1 cut(s) | 3072 |
| AlwI | GGATC | 6 cut(s) | 320, 862, 1647, 2217, 3012, 3072 |
| Ama87I | CYCGRG | 4 cut(s) | 482, 1117, 1994, 2189 |
| Aor51HI | AGCGCT | 1 cut(s) | 566 |
| AoxI | GGCC | 8 cut(s) | 3, 479, 880, 967, 1626, 1779, 3507, 3640 |
| ApaLI | GTGCAC | 1 cut(s) | 3072 |
| ApeKI | GCWGC | 6 cut(s) | 443, 726, 2244, 2289, 2911, 2946 |
| AseI | ATTAAT | 1 cut(s) | 3150 |
| Asp700I | GAANNNNTTC | 4 cut(s) | 89, 389, 1515, 3456 |
| AspLEI | GCGC | 3 cut(s) | 271, 567, 1956 |
| AspS9I | GGNCC | 3 cut(s) | 480, 968, 1780 |
| AsuC2I | CCSGG | 4 cut(s) | 82, 1118, 1119, 3165 |
| AsuHPI | GGTGA | 7 cut(s) | 85, 168, 302, 689, 1133, 1250, 1472 |
| AsuII | TTCGAA | 2 cut(s) | 717, 1677 |
| AvaI | CYCGRG | 4 cut(s) | 482, 1117, 1994, 2189 |
| AxyI | CCTNAGG | 2 cut(s) | 36, 1776 |
| BaeGI | GKGCMC | 1 cut(s) | 3076 |
| BalI | TGGCCA | 1 cut(s) | 1628 |
| BanII | GRGCYC | 4 cut(s) | 1196, 3030, 3385, 3570 |
| BarI | GAAGNNNNNNTAC | 4 cut(s) | 2393, 2425, 2657, 2689 |
| BbsI | GAAGAC | 3 cut(s) | 1233, 1617, 2139 |
| Bbv12I | GWGCWC | 2 cut(s) | 417, 3076 |
| BbvI | GCAGC | 6 cut(s) | 455, 713, 2256, 2276, 2898, 2933 |
| BccI | CCATC | 9 cut(s) | 108, 317, 337, 527, 1298, 1834, 3089, 3351, 3419 |
| BceAI | ACGGC | 3 cut(s) | 334, 867, 3126 |
| BciT130I | CCWGG | 6 cut(s) | 972, 1542, 1758, 1958, 2121, 3325 |
| BclI | TGATCA | 3 cut(s) | 1522, 2613, 2811 |
| BcnI | CCSGG | 4 cut(s) | 82, 1118, 1119, 3165 |
| BfaI | CTAG | 3 cut(s) | 1703, 2924, 2957 |
| BfmI | CTRYAG | 2 cut(s) | 2577, 2775 |
| BfoI | RGCGCY | 2 cut(s) | 568, 1957 |
| BfrI | CTTAAG | 3 cut(s) | 1076, 1475, 2228 |
| BfuAI | ACCTGC | 4 cut(s) | 187, 542, 2547, 2745 |
| BglII | AGATCT | 1 cut(s) | 1705 |
| BisI | GCNGC | 8 cut(s) | 6, 444, 727, 2245, 2290, 2293, 2912, 2947 |
| BlsI | GCNGC | 8 cut(s) | 7, 445, 728, 2246, 2291, 2294, 2913, 2948 |
| BmeT110I | CYCGRG | 4 cut(s) | 482, 1117, 1994, 2189 |
| BmgBI | CACGTC | 2 cut(s) | 2952, 3125 |
| BmgT120I | GGNCC | 3 cut(s) | 480, 968, 1780 |
| BmiI | GGNNCC | 3 cut(s) | 1195, 1948, 3666 |
| BmrI | ACTGGG | 1 cut(s) | 1240 |
| BmuI | ACTGGG | 1 cut(s) | 1240 |
| BpiI | GAAGAC | 3 cut(s) | 1233, 1617, 2139 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 2951, 2983 |
| BpmI | CTGGAG | 6 cut(s) | 176, 966, 1182, 1740, 2552, 2750 |
| Bpu10I | CCTNAGC | 1 cut(s) | 416 |
| Bpu14I | TTCGAA | 2 cut(s) | 717, 1677 |
| BpuEI | CTTGAG | 9 cut(s) | 1901, 1937, 2321, 2434, 2500, 2566, 2698, 2764, 2953 |
| BpuMI | CCSGG | 4 cut(s) | 82, 1118, 1119, 3165 |
| Bsa29I | ATCGAT | 1 cut(s) | 1935 |
| BsaBI | GATNNNNATC | 3 cut(s) | 957, 3218, 3410 |
| BsaI | GGTCTC | 1 cut(s) | 2190 |
| BsaJI | CCNNGG | 8 cut(s) | 970, 1116, 1117, 2915, 3256, 3323, 3385, 3504 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 851, 889, 2996, 3329, 3579 |
| Bse1I | ACTGG | 3 cut(s) | 159, 1235, 2934 |
| Bse21I | CCTNAGG | 2 cut(s) | 36, 1776 |
| Bse3DI | GCAATG | 2 cut(s) | 678, 1210 |
| Bse8I | GATNNNNATC | 3 cut(s) | 957, 3218, 3410 |
| BseBI | CCWGG | 6 cut(s) | 972, 1542, 1758, 1958, 2121, 3325 |
| BseCI | ATCGAT | 1 cut(s) | 1935 |
| BseDI | CCNNGG | 8 cut(s) | 970, 1116, 1117, 2915, 3256, 3323, 3385, 3504 |
| BseJI | GATNNNNATC | 3 cut(s) | 957, 3218, 3410 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 851, 889, 2996, 3329, 3579 |
| BseMI | GCAATG | 2 cut(s) | 678, 1210 |
| BseMII | CTCAG | 5 cut(s) | 50, 430, 1767, 1784, 3748 |
| BseNI | ACTGG | 3 cut(s) | 159, 1235, 2934 |
| BseRI | GAGGAG | 2 cut(s) | 3119, 3222 |
| BseSI | GKGCMC | 1 cut(s) | 3076 |
| BseXI | GCAGC | 6 cut(s) | 455, 713, 2256, 2276, 2898, 2933 |
| BseYI | CCCAGC | 1 cut(s) | 567 |
| BsgI | GTGCAG | 5 cut(s) | 1925, 2525, 2723, 2932, 2970 |
| BshFI | GGCC | 8 cut(s) | 5, 481, 882, 969, 1628, 1781, 3509, 3642 |
| BshVI | ATCGAT | 1 cut(s) | 1935 |
| BsiHKAI | GWGCWC | 2 cut(s) | 417, 3076 |
| BsiHKCI | CYCGRG | 4 cut(s) | 482, 1117, 1994, 2189 |
| BsiSI | CCGG | 3 cut(s) | 82, 1118, 3164 |
| BsiWI | CGTACG | 1 cut(s) | 3143 |
| BslFI | GGGAC | 2 cut(s) | 2164, 3734 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 851, 889, 2996, 3329, 3579 |
| BsmBI | CGTCTC | 4 cut(s) | 707, 755, 3131, 3706 |
| BsmFI | GGGAC | 2 cut(s) | 2164, 3734 |
| BsmI | GAATGC | 1 cut(s) | 3284 |
| BsnI | GGCC | 8 cut(s) | 5, 481, 882, 969, 1628, 1781, 3509, 3642 |
| Bso31I | GGTCTC | 1 cut(s) | 2190 |
| BsoBI | CYCGRG | 4 cut(s) | 482, 1117, 1994, 2189 |
| Bsp119I | TTCGAA | 2 cut(s) | 717, 1677 |
| Bsp1286I | GDGCHC | 6 cut(s) | 417, 1196, 3030, 3076, 3385, 3570 |
| Bsp1407I | TGTACA | 3 cut(s) | 1127, 2281, 2938 |
| Bsp19I | CCATGG | 1 cut(s) | 2915 |
| BspACI | CCGC | 4 cut(s) | 6, 1731, 2293, 3054 |
| BspANI | GGCC | 8 cut(s) | 5, 481, 882, 969, 1628, 1781, 3509, 3642 |
| BspCNI | CTCAG | 5 cut(s) | 49, 429, 1768, 1785, 3747 |
| BspDI | ATCGAT | 1 cut(s) | 1935 |
| BspLI | GGNNCC | 3 cut(s) | 1195, 1948, 3666 |
| BspMI | ACCTGC | 4 cut(s) | 187, 542, 2547, 2745 |
| BspPI | GGATC | 6 cut(s) | 320, 862, 1647, 2217, 3012, 3072 |
| BspQI | GCTCTTC | 1 cut(s) | 2217 |
| BspT104I | TTCGAA | 2 cut(s) | 717, 1677 |
| BspTI | CTTAAG | 3 cut(s) | 1076, 1475, 2228 |
| BspTNI | GGTCTC | 1 cut(s) | 2190 |
| BsrDI | GCAATG | 2 cut(s) | 678, 1210 |
| BsrGI | TGTACA | 3 cut(s) | 1127, 2281, 2938 |
| BsrI | ACTGG | 3 cut(s) | 159, 1235, 2934 |
| BssECI | CCNNGG | 8 cut(s) | 970, 1116, 1117, 2915, 3256, 3323, 3385, 3504 |
| BssT1I | CCWWGG | 1 cut(s) | 2915 |
| Bst2UI | CCWGG | 6 cut(s) | 972, 1542, 1758, 1958, 2121, 3325 |
| Bst4CI | ACNGT | 3 cut(s) | 297, 701, 2965 |
| Bst6I | CTCTTC | 2 cut(s) | 2217, 2858 |
| BstAFI | CTTAAG | 3 cut(s) | 1076, 1475, 2228 |
| BstAUI | TGTACA | 3 cut(s) | 1127, 2281, 2938 |
| BstBI | TTCGAA | 2 cut(s) | 717, 1677 |
| BstC8I | GCNNGC | 4 cut(s) | 724, 1904, 3381, 3754 |
| BstDSI | CCRYGG | 1 cut(s) | 2915 |
| BstH2I | RGCGCY | 2 cut(s) | 568, 1957 |
| BstHHI | GCGC | 3 cut(s) | 271, 567, 1956 |
| BstNI | CCWGG | 6 cut(s) | 972, 1542, 1758, 1958, 2121, 3325 |
| BstSFI | CTRYAG | 2 cut(s) | 2577, 2775 |
| BstSLI | GKGCMC | 1 cut(s) | 3076 |
| BstV1I | GCAGC | 6 cut(s) | 455, 713, 2256, 2276, 2898, 2933 |
| BstV2I | GAAGAC | 3 cut(s) | 1233, 1617, 2139 |
| BstX2I | RGATCY | 4 cut(s) | 325, 1639, 1705, 2209 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1636 |
| BstYI | RGATCY | 4 cut(s) | 325, 1639, 1705, 2209 |
| Bsu15I | ATCGAT | 1 cut(s) | 1935 |
| Bsu36I | CCTNAGG | 2 cut(s) | 36, 1776 |
| BsuRI | GGCC | 8 cut(s) | 5, 481, 882, 969, 1628, 1781, 3509, 3642 |
| BsuTUI | ATCGAT | 1 cut(s) | 1935 |
| BtgI | CCRYGG | 1 cut(s) | 2915 |
| BtrI | CACGTC | 2 cut(s) | 2952, 3125 |
| BtsI | GCAGTG | 1 cut(s) | 3573 |
| BtsIMutI | CAGTG | 2 cut(s) | 3573, 3742 |
| BveI | ACCTGC | 4 cut(s) | 187, 542, 2547, 2745 |
| Cac8I | GCNNGC | 4 cut(s) | 724, 1904, 3381, 3754 |
| CfoI | GCGC | 3 cut(s) | 271, 567, 1956 |
| Cfr13I | GGNCC | 3 cut(s) | 480, 968, 1780 |
| Cfr9I | CCCGGG | 1 cut(s) | 1117 |
| ClaI | ATCGAT | 1 cut(s) | 1935 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1128, 1163 |
| EaeI | YGGCCR | 3 cut(s) | 3, 880, 1626 |
| Eam1104I | CTCTTC | 2 cut(s) | 2217, 2858 |
| EarI | CTCTTC | 2 cut(s) | 2217, 2858 |
| Eco130I | CCWWGG | 1 cut(s) | 2915 |
| Eco147I | AGGCCT | 2 cut(s) | 3509, 3642 |
| Eco24I | GRGCYC | 4 cut(s) | 1196, 3030, 3385, 3570 |
| Eco31I | GGTCTC | 1 cut(s) | 2190 |
| Eco32I | GATATC | 2 cut(s) | 1342, 3694 |
| Eco47III | AGCGCT | 1 cut(s) | 566 |
| Eco81I | CCTNAGG | 2 cut(s) | 36, 1776 |
| Eco88I | CYCGRG | 4 cut(s) | 482, 1117, 1994, 2189 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1780 |
| EcoRI | GAATTC | 2 cut(s) | 713, 2260 |
| EcoRII | CCWGG | 6 cut(s) | 970, 1540, 1756, 1956, 2119, 3323 |
| EcoRV | GATATC | 2 cut(s) | 1342, 3694 |
| EcoT14I | CCWWGG | 1 cut(s) | 2915 |
| EcoT22I | ATGCAT | 4 cut(s) | 370, 1485, 1689, 3275 |
| EcoT38I | GRGCYC | 4 cut(s) | 1196, 3030, 3385, 3570 |
| ErhI | CCWWGG | 1 cut(s) | 2915 |
| Esp3I | CGTCTC | 4 cut(s) | 707, 755, 3131, 3706 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 2233, 2265 |
| FaqI | GGGAC | 2 cut(s) | 2164, 3734 |
| FauI | CCCGC | 1 cut(s) | 3047 |
| FauNDI | CATATG | 1 cut(s) | 781 |
| FbaI | TGATCA | 3 cut(s) | 1522, 2613, 2811 |
| Fnu4HI | GCNGC | 8 cut(s) | 6, 444, 727, 2245, 2290, 2293, 2912, 2947 |
| FriOI | GRGCYC | 4 cut(s) | 1196, 3030, 3385, 3570 |
| Fsp4HI | GCNGC | 8 cut(s) | 6, 444, 727, 2245, 2290, 2293, 2912, 2947 |
| FspBI | CTAG | 3 cut(s) | 1703, 2924, 2957 |
| GlaI | GCGC | 3 cut(s) | 270, 566, 1955 |
| GluI | GCNGC | 8 cut(s) | 6, 444, 727, 2245, 2290, 2293, 2912, 2947 |
| GsaI | CCCAGC | 1 cut(s) | 571 |
| GsuI | CTGGAG | 6 cut(s) | 176, 966, 1182, 1740, 2552, 2750 |
| HaeII | RGCGCY | 2 cut(s) | 568, 1957 |
| HaeIII | GGCC | 8 cut(s) | 5, 481, 882, 969, 1628, 1781, 3509, 3642 |
| HapII | CCGG | 3 cut(s) | 82, 1118, 3164 |
| HhaI | GCGC | 3 cut(s) | 271, 567, 1956 |
| Hin6I | GCGC | 3 cut(s) | 269, 565, 1954 |
| HinP1I | GCGC | 3 cut(s) | 269, 565, 1954 |
| HincII | GTYRAC | 2 cut(s) | 1738, 2877 |
| HindII | GTYRAC | 2 cut(s) | 1738, 2877 |
| HindIII | AAGCTT | 6 cut(s) | 209, 720, 2063, 2195, 3224, 3754 |
| HpaII | CCGG | 3 cut(s) | 82, 1118, 3164 |
| HphI | GGTGA | 7 cut(s) | 85, 168, 302, 689, 1133, 1250, 1472 |
| Hpy166II | GTNNAC | 6 cut(s) | 293, 634, 1725, 1738, 2877, 3074 |
| Hpy8I | GTNNAC | 6 cut(s) | 293, 634, 1725, 1738, 2877, 3074 |
| Hpy99I | CGWCG | 1 cut(s) | 3720 |
| HpyCH4III | ACNGT | 3 cut(s) | 297, 701, 2965 |
| HpyCH4IV | ACGT | 3 cut(s) | 388, 2951, 3124 |
| HpySE526I | ACGT | 3 cut(s) | 388, 2951, 3124 |
| HspAI | GCGC | 3 cut(s) | 269, 565, 1954 |
| Ksp22I | TGATCA | 3 cut(s) | 1522, 2613, 2811 |
| LguI | GCTCTTC | 1 cut(s) | 2217 |
| LmnI | GCTCC | 6 cut(s) | 562, 1199, 1952, 2096, 2271, 3078 |
| Lsp1109I | GCAGC | 6 cut(s) | 455, 713, 2256, 2276, 2898, 2933 |
| MaeI | CTAG | 3 cut(s) | 1703, 2924, 2957 |
| MaeII | ACGT | 3 cut(s) | 388, 2951, 3124 |
| MaeIII | GTNAC | 5 cut(s) | 988, 2952, 3260, 3362, 3630 |
| MfeI | CAATTG | 3 cut(s) | 195, 2617, 2815 |
| MflI | RGATCY | 4 cut(s) | 325, 1639, 1705, 2209 |
| MhlI | GDGCHC | 6 cut(s) | 417, 1196, 3030, 3076, 3385, 3570 |
| MlsI | TGGCCA | 1 cut(s) | 1628 |
| MluNI | TGGCCA | 1 cut(s) | 1628 |
| MmeI | TCCRAC | 1 cut(s) | 553 |
| Mox20I | TGGCCA | 1 cut(s) | 1628 |
| Mph1103I | ATGCAT | 4 cut(s) | 370, 1485, 1689, 3275 |
| MroXI | GAANNNNTTC | 4 cut(s) | 89, 389, 1515, 3456 |
| MscI | TGGCCA | 1 cut(s) | 1628 |
| MslI | CAYNNNNRTG | 3 cut(s) | 105, 1628, 1634 |
| Msp20I | TGGCCA | 1 cut(s) | 1628 |
| MspA1I | CMGCKG | 1 cut(s) | 1731 |
| MspCI | CTTAAG | 3 cut(s) | 1076, 1475, 2228 |
| MspI | CCGG | 3 cut(s) | 82, 1118, 3164 |
| MunI | CAATTG | 3 cut(s) | 195, 2617, 2815 |
| Mva1269I | GAATGC | 1 cut(s) | 3284 |
| MvaI | CCWGG | 6 cut(s) | 972, 1542, 1758, 1958, 2121, 3325 |
| NciI | CCSGG | 4 cut(s) | 82, 1118, 1119, 3165 |
| NcoI | CCATGG | 1 cut(s) | 2915 |
| NdeI | CATATG | 1 cut(s) | 781 |
| NlaIV | GGNNCC | 3 cut(s) | 1195, 1948, 3666 |
| NmuCI | GTSAC | 2 cut(s) | 2952, 3362 |
| NsiI | ATGCAT | 4 cut(s) | 370, 1485, 1689, 3275 |
| NspV | TTCGAA | 2 cut(s) | 717, 1677 |
| PaeR7I | CTCGAG | 2 cut(s) | 1994, 2189 |
| PaqCI | CACCTGC | 2 cut(s) | 187, 542 |
| PceI | AGGCCT | 2 cut(s) | 3509, 3642 |
| PciSI | GCTCTTC | 1 cut(s) | 2217 |
| PctI | GAATGC | 1 cut(s) | 3284 |
| PdmI | GAANNNNTTC | 4 cut(s) | 89, 389, 1515, 3456 |
| PfeI | GAWTC | 8 cut(s) | 203, 281, 464, 981, 1275, 2053, 2233, 3406 |
| Pfl23II | CGTACG | 1 cut(s) | 3143 |
| PfoI | TCCNGGA | 2 cut(s) | 1540, 3163 |
| PkrI | GCNGC | 8 cut(s) | 7, 445, 728, 2246, 2291, 2294, 2913, 2948 |
| PshBI | ATTAAT | 1 cut(s) | 3150 |
| PsiI | TTATAA | 1 cut(s) | 1035 |
| Psp1406I | AACGTT | 1 cut(s) | 388 |
| Psp6I | CCWGG | 6 cut(s) | 970, 1540, 1756, 1956, 2119, 3323 |
| PspFI | CCCAGC | 1 cut(s) | 567 |
| PspGI | CCWGG | 6 cut(s) | 970, 1540, 1756, 1956, 2119, 3323 |
| PspLI | CGTACG | 1 cut(s) | 3143 |
| PspN4I | GGNNCC | 3 cut(s) | 1195, 1948, 3666 |
| PspPI | GGNCC | 3 cut(s) | 480, 968, 1780 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 3193, 3225 |
| PsuI | RGATCY | 4 cut(s) | 325, 1639, 1705, 2209 |
| RseI | CAYNNNNRTG | 3 cut(s) | 105, 1628, 1634 |
| SapI | GCTCTTC | 1 cut(s) | 2217 |
| SatI | GCNGC | 8 cut(s) | 6, 444, 727, 2245, 2290, 2293, 2912, 2947 |
| Sau96I | GGNCC | 3 cut(s) | 480, 968, 1780 |
| SduI | GDGCHC | 6 cut(s) | 417, 1196, 3030, 3076, 3385, 3570 |
| SfcI | CTRYAG | 2 cut(s) | 2577, 2775 |
| Sfr274I | CTCGAG | 2 cut(s) | 1994, 2189 |
| SfuI | TTCGAA | 2 cut(s) | 717, 1677 |
| SlaI | CTCGAG | 2 cut(s) | 1994, 2189 |
| SmaI | CCCGGG | 1 cut(s) | 1119 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 105, 1628, 1634 |
| SseBI | AGGCCT | 2 cut(s) | 3509, 3642 |
| SsiI | CCGC | 4 cut(s) | 6, 1731, 2293, 3054 |
| SspI | AATATT | 3 cut(s) | 1466, 3154, 3538 |
| SspMI | CTAG | 3 cut(s) | 1703, 2924, 2957 |
| StuI | AGGCCT | 2 cut(s) | 3509, 3642 |
| StyI | CCWWGG | 1 cut(s) | 2915 |
| TaaI | ACNGT | 3 cut(s) | 297, 701, 2965 |
| TaiI | ACGT | 3 cut(s) | 391, 2954, 3127 |
| TatI | WGTACW | 6 cut(s) | 1127, 1585, 2281, 2409, 2673, 2938 |
| TauI | GCSGC | 2 cut(s) | 8, 2295 |
| TfiI | GAWTC | 8 cut(s) | 203, 281, 464, 981, 1275, 2053, 2233, 3406 |
| TscAI | CASTG | 2 cut(s) | 3580, 3742 |
| TseFI | GTSAC | 2 cut(s) | 2952, 3362 |
| TseI | GCWGC | 6 cut(s) | 443, 726, 2244, 2289, 2911, 2946 |
| Tsp45I | GTSAC | 2 cut(s) | 2952, 3362 |
| TspGWI | ACGGA | 3 cut(s) | 1186, 1444, 3091 |
| TspMI | CCCGGG | 1 cut(s) | 1117 |
| TspRI | CASTG | 2 cut(s) | 3580, 3742 |
| Vha464I | CTTAAG | 3 cut(s) | 1076, 1475, 2228 |
| VneI | GTGCAC | 1 cut(s) | 3072 |
| VspI | ATTAAT | 1 cut(s) | 3150 |
| XbaI | TCTAGA | 1 cut(s) | 2923 |
| XhoI | CTCGAG | 2 cut(s) | 1994, 2189 |
| XmaI | CCCGGG | 1 cut(s) | 1117 |
| XmnI | GAANNNNTTC | 4 cut(s) | 89, 389, 1515, 3456 |
| XspI | CTAG | 3 cut(s) | 1703, 2924, 2957 |
| Zsp2I | ATGCAT | 4 cut(s) | 370, 1485, 1689, 3275 |