Disease resistance protein (TIR-NBS-LRR class)
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| TIR | PF01582 | 13 - 189 | 2.1e-56 | TIR domain |
| TIR_2 | PF13676 | 16 - 125 | 2.2e-15 | TIR domain |
| NB-ARC | PF00931 | 208 - 364 | 3.5e-14 | NB-ARC domain |
| WHD_ROQ1 | PF23282 | 439 - 515 | 1.6e-16 | Disease resistance protein Roq1-like, winged-helix domain |
| LRR_14 | PF23598 | 752 - 815 | 5.2e-06 | Leucine-rich repeat region |
| C-JID | PF20160 | 1023 - 1158 | 2.1e-13 | C-JID domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 971 |
| Acc16I | TGCGCA | 2 cut(s) | 27, 267 |
| AccII | CGCG | 2 cut(s) | 294, 3423 |
| AccIII | TCCGGA | 1 cut(s) | 3034 |
| AciI | CCGC | 7 cut(s) | 76, 105, 294, 1119, 2545, 3137, 3423 |
| AclI | AACGTT | 2 cut(s) | 391, 1428 |
| AclWI | GGATC | 7 cut(s) | 323, 827, 847, 2925, 3032, 3045, 3289 |
| AcsI | RAATTY | 4 cut(s) | 1170, 1709, 2504, 3081 |
| AcuI | CTGAAG | 1 cut(s) | 3171 |
| AdeI | CACNNNGTG | 1 cut(s) | 3328 |
| AfaI | GTAC | 8 cut(s) | 342, 871, 2641, 2932, 3044, 3056, 3287, 3396 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 67, 352, 836, 858, 874, 2739, 2778 |
| AflIII | ACRYGT | 1 cut(s) | 337 |
| AjnI | CCWGG | 6 cut(s) | 952, 1552, 1900, 2563, 2933, 3324 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 912, 944, 2523, 2555 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 1413, 1445 |
| Alw21I | GWGCWC | 3 cut(s) | 411, 1223, 3028 |
| Alw26I | GTCTC | 4 cut(s) | 1449, 2360, 2411, 3473 |
| AlwI | GGATC | 7 cut(s) | 323, 827, 847, 2925, 3032, 3045, 3289 |
| Aor13HI | TCCGGA | 1 cut(s) | 3034 |
| AoxI | GGCC | 5 cut(s) | 174, 1741, 1832, 1933, 3474 |
| ApeKI | GCWGC | 5 cut(s) | 365, 368, 1981, 2043, 2862 |
| ApoI | RAATTY | 4 cut(s) | 1170, 1709, 2504, 3081 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 2385, 2417 |
| Asp700I | GAANNNNTTC | 4 cut(s) | 618, 1626, 1803, 2082 |
| AspA2I | CCTAGG | 1 cut(s) | 1943 |
| AspLEI | GCGC | 7 cut(s) | 28, 268, 1563, 1779, 2808, 3423, 3459 |
| AspS9I | GGNCC | 6 cut(s) | 175, 877, 950, 2211, 3474, 3527 |
| AsuC2I | CCSGG | 4 cut(s) | 1580, 2773, 2887, 3072 |
| AsuHPI | GGTGA | 8 cut(s) | 944, 1739, 1940, 2068, 3106, 3266, 3314, 3451 |
| AsuII | TTCGAA | 2 cut(s) | 711, 2439 |
| AvaII | GGWCC | 4 cut(s) | 877, 950, 2211, 3527 |
| AvrII | CCTAGG | 1 cut(s) | 1943 |
| BamHI | GGATCC | 1 cut(s) | 3037 |
| BanII | GRGCYC | 1 cut(s) | 3028 |
| BbsI | GAAGAC | 4 cut(s) | 2196, 2622, 2882, 3108 |
| Bbv12I | GWGCWC | 3 cut(s) | 411, 1223, 3028 |
| BbvCI | CCTCAGC | 2 cut(s) | 1164, 2777 |
| BbvI | GCAGC | 5 cut(s) | 355, 377, 1993, 2030, 2849 |
| BccI | CCATC | 6 cut(s) | 340, 752, 838, 1867, 2226, 2765 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 3329, 3363 |
| BciT130I | CCWGG | 6 cut(s) | 954, 1554, 1902, 2565, 2935, 3326 |
| BclI | TGATCA | 1 cut(s) | 934 |
| BcnI | CCSGG | 4 cut(s) | 1580, 2773, 2887, 3072 |
| BcoDI | GTCTC | 4 cut(s) | 1449, 2360, 2411, 3473 |
| BfmI | CTRYAG | 2 cut(s) | 834, 1079 |
| BfoI | RGCGCY | 1 cut(s) | 2809 |
| BglII | AGATCT | 3 cut(s) | 1999, 2454, 2788 |
| BisI | GCNGC | 6 cut(s) | 105, 366, 369, 1982, 2044, 2863 |
| BlnI | CCTAGG | 1 cut(s) | 1943 |
| BlsI | GCNGC | 6 cut(s) | 106, 367, 370, 1983, 2045, 2864 |
| BmcAI | AGTACT | 1 cut(s) | 3287 |
| Bme18I | GGWCC | 4 cut(s) | 877, 950, 2211, 3527 |
| BmgT120I | GGNCC | 6 cut(s) | 175, 877, 950, 2211, 3474, 3527 |
| BmiI | GGNNCC | 6 cut(s) | 1198, 2213, 2463, 2500, 2731, 3039 |
| BpiI | GAAGAC | 4 cut(s) | 2196, 2622, 2882, 3108 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 3265, 3297 |
| Bpu10I | CCTNAGC | 3 cut(s) | 1164, 1177, 2777 |
| Bpu14I | TTCGAA | 2 cut(s) | 711, 2439 |
| BpuEI | CTTGAG | 5 cut(s) | 395, 523, 608, 1665, 3357 |
| BpuMI | CCSGG | 4 cut(s) | 1580, 2773, 2887, 3072 |
| Bsa29I | ATCGAT | 1 cut(s) | 1962 |
| BsaBI | GATNNNNATC | 3 cut(s) | 987, 1454, 3125 |
| BsaI | GGTCTC | 1 cut(s) | 3473 |
| BsaJI | CCNNGG | 4 cut(s) | 61, 1757, 1943, 2564 |
| BsaWI | WCCGGW | 2 cut(s) | 3034, 3436 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 1353, 1383, 2811, 2841 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 67, 352, 836, 858, 874, 2739, 2778 |
| Bse118I | RCCGGY | 2 cut(s) | 172, 677 |
| Bse1I | ACTGG | 4 cut(s) | 90, 1489, 2385, 2708 |
| Bse3DI | GCAATG | 2 cut(s) | 1777, 2386 |
| Bse8I | GATNNNNATC | 3 cut(s) | 987, 1454, 3125 |
| BseAI | TCCGGA | 1 cut(s) | 3034 |
| BseBI | CCWGG | 6 cut(s) | 954, 1554, 1902, 2565, 2935, 3326 |
| BseCI | ATCGAT | 1 cut(s) | 1962 |
| BseDI | CCNNGG | 4 cut(s) | 61, 1757, 1943, 2564 |
| BseGI | GGATG | 9 cut(s) | 437, 576, 811, 1372, 1503, 2110, 2768, 2974, 3031 |
| BseJI | GATNNNNATC | 3 cut(s) | 987, 1454, 3125 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 67, 352, 836, 858, 874, 2739, 2778 |
| BseMI | GCAATG | 2 cut(s) | 1777, 2386 |
| BseNI | ACTGG | 4 cut(s) | 90, 1489, 2385, 2708 |
| BseRI | GAGGAG | 4 cut(s) | 9, 171, 1668, 2794 |
| BseXI | GCAGC | 5 cut(s) | 355, 377, 1993, 2030, 2849 |
| BsgI | GTGCAG | 3 cut(s) | 134, 2644, 2883 |
| Bsh1236I | CGCG | 2 cut(s) | 294, 3423 |
| BshFI | GGCC | 5 cut(s) | 176, 1743, 1834, 1935, 3476 |
| BshVI | ATCGAT | 1 cut(s) | 1962 |
| BsiHKAI | GWGCWC | 3 cut(s) | 411, 1223, 3028 |
| BsiSI | CCGG | 8 cut(s) | 173, 678, 1580, 2773, 2886, 3035, 3071, 3437 |
| BslFI | GGGAC | 4 cut(s) | 1630, 2197, 2332, 2573 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 67, 352, 836, 858, 874, 2739, 2778 |
| BsmAI | GTCTC | 4 cut(s) | 1449, 2360, 2411, 3473 |
| BsmFI | GGGAC | 4 cut(s) | 1630, 2197, 2332, 2573 |
| BsmI | GAATGC | 3 cut(s) | 284, 539, 2980 |
| BsnI | GGCC | 5 cut(s) | 176, 1743, 1834, 1935, 3476 |
| Bso31I | GGTCTC | 1 cut(s) | 3473 |
| Bsp119I | TTCGAA | 2 cut(s) | 711, 2439 |
| Bsp1286I | GDGCHC | 3 cut(s) | 411, 1223, 3028 |
| Bsp13I | TCCGGA | 1 cut(s) | 3034 |
| BspACI | CCGC | 7 cut(s) | 76, 105, 294, 1119, 2545, 3137, 3423 |
| BspANI | GGCC | 5 cut(s) | 176, 1743, 1834, 1935, 3476 |
| BspDI | ATCGAT | 1 cut(s) | 1962 |
| BspEI | TCCGGA | 1 cut(s) | 3034 |
| BspFNI | CGCG | 2 cut(s) | 294, 3423 |
| BspLI | GGNNCC | 6 cut(s) | 1198, 2213, 2463, 2500, 2731, 3039 |
| BspPI | GGATC | 7 cut(s) | 323, 827, 847, 2925, 3032, 3045, 3289 |
| BspQI | GCTCTTC | 1 cut(s) | 1091 |
| BspT104I | TTCGAA | 2 cut(s) | 711, 2439 |
| BspTNI | GGTCTC | 1 cut(s) | 3473 |
| BsrDI | GCAATG | 2 cut(s) | 1777, 2386 |
| BsrFI | RCCGGY | 2 cut(s) | 172, 677 |
| BsrI | ACTGG | 4 cut(s) | 90, 1489, 2385, 2708 |
| BssAI | RCCGGY | 2 cut(s) | 172, 677 |
| BssECI | CCNNGG | 4 cut(s) | 61, 1757, 1943, 2564 |
| BssT1I | CCWWGG | 2 cut(s) | 1757, 1943 |
| Bst2UI | CCWGG | 6 cut(s) | 954, 1554, 1902, 2565, 2935, 3326 |
| Bst4CI | ACNGT | 3 cut(s) | 634, 770, 2881 |
| Bst6I | CTCTTC | 1 cut(s) | 1091 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 1012, 2105 |
| BstBI | TTCGAA | 2 cut(s) | 711, 2439 |
| BstC8I | GCNNGC | 4 cut(s) | 30, 1832, 1836, 2804 |
| BstEII | GGTNACC | 1 cut(s) | 1487 |
| BstF5I | GGATG | 9 cut(s) | 437, 576, 811, 1372, 1503, 2110, 2768, 2974, 3031 |
| BstFNI | CGCG | 2 cut(s) | 294, 3423 |
| BstH2I | RGCGCY | 1 cut(s) | 2809 |
| BstHHI | GCGC | 7 cut(s) | 28, 268, 1563, 1779, 2808, 3423, 3459 |
| BstMAI | GTCTC | 4 cut(s) | 1449, 2360, 2411, 3473 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 1012, 1558, 1567, 1776, 1897, 2105, 3374 |
| BstNI | CCWGG | 6 cut(s) | 954, 1554, 1902, 2565, 2935, 3326 |
| BstNSI | RCATGY | 4 cut(s) | 32, 341, 1350, 1401 |
| BstPI | GGTNACC | 1 cut(s) | 1487 |
| BstSFI | CTRYAG | 2 cut(s) | 834, 1079 |
| BstUI | CGCG | 2 cut(s) | 294, 3423 |
| BstV1I | GCAGC | 5 cut(s) | 355, 377, 1993, 2030, 2849 |
| BstV2I | GAAGAC | 4 cut(s) | 2196, 2622, 2882, 3108 |
| BstX2I | RGATCY | 5 cut(s) | 328, 1999, 2454, 2788, 3037 |
| BstYI | RGATCY | 5 cut(s) | 328, 1999, 2454, 2788, 3037 |
| Bsu15I | ATCGAT | 1 cut(s) | 1962 |
| BsuRI | GGCC | 5 cut(s) | 176, 1743, 1834, 1935, 3476 |
| BsuTUI | ATCGAT | 1 cut(s) | 1962 |
| BtsCI | GGATG | 9 cut(s) | 437, 576, 811, 1372, 1503, 2110, 2768, 2974, 3031 |
| BtsI | GCAGTG | 1 cut(s) | 2178 |
| BtsIMutI | CAGTG | 4 cut(s) | 630, 2178, 2378, 2886 |
| Cac8I | GCNNGC | 4 cut(s) | 30, 1832, 1836, 2804 |
| CfoI | GCGC | 7 cut(s) | 28, 268, 1563, 1779, 2808, 3423, 3459 |
| Cfr10I | RCCGGY | 2 cut(s) | 172, 677 |
| Cfr13I | GGNCC | 6 cut(s) | 175, 877, 950, 2211, 3474, 3527 |
| ClaI | ATCGAT | 1 cut(s) | 1962 |
| CseI | GACGC | 1 cut(s) | 300 |
| CsiI | ACCWGGT | 2 cut(s) | 2933, 3324 |
| Csp6I | GTAC | 8 cut(s) | 341, 870, 2640, 2931, 3043, 3055, 3286, 3395 |
| CviQI | GTAC | 8 cut(s) | 341, 870, 2640, 2931, 3043, 3055, 3286, 3395 |
| DraI | TTTAAA | 2 cut(s) | 549, 2509 |
| DraIII | CACNNNGTG | 1 cut(s) | 3328 |
| Eam1104I | CTCTTC | 1 cut(s) | 1091 |
| EarI | CTCTTC | 1 cut(s) | 1091 |
| EciI | GGCGGA | 1 cut(s) | 2560 |
| Ecl136II | GAGCTC | 1 cut(s) | 3026 |
| Eco130I | CCWWGG | 2 cut(s) | 1757, 1943 |
| Eco24I | GRGCYC | 1 cut(s) | 3028 |
| Eco31I | GGTCTC | 1 cut(s) | 3473 |
| Eco32I | GATATC | 2 cut(s) | 1452, 3127 |
| Eco47I | GGWCC | 4 cut(s) | 877, 950, 2211, 3527 |
| Eco53kI | GAGCTC | 1 cut(s) | 3026 |
| Eco57I | CTGAAG | 1 cut(s) | 3171 |
| Eco91I | GGTNACC | 1 cut(s) | 1487 |
| EcoICRI | GAGCTC | 1 cut(s) | 3026 |
| EcoO109I | RGGNCCY | 1 cut(s) | 877 |
| EcoO65I | GGTNACC | 1 cut(s) | 1487 |
| EcoRI | GAATTC | 1 cut(s) | 1170 |
| EcoRII | CCWGG | 6 cut(s) | 952, 1552, 1900, 2563, 2933, 3324 |
| EcoRV | GATATC | 2 cut(s) | 1452, 3127 |
| EcoT14I | CCWWGG | 2 cut(s) | 1757, 1943 |
| EcoT22I | ATGCAT | 5 cut(s) | 605, 990, 1309, 1399, 1503 |
| EcoT38I | GRGCYC | 1 cut(s) | 3028 |
| ErhI | CCWWGG | 2 cut(s) | 1757, 1943 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1655, 1687 |
| FaqI | GGGAC | 4 cut(s) | 1630, 2197, 2332, 2573 |
| FauI | CCCGC | 2 cut(s) | 83, 3416 |
| FbaI | TGATCA | 1 cut(s) | 934 |
| Fnu4HI | GCNGC | 6 cut(s) | 105, 366, 369, 1982, 2044, 2863 |
| FokI | GGATG | 9 cut(s) | 424, 563, 818, 1379, 1510, 2117, 2755, 2981, 3018 |
| FriOI | GRGCYC | 1 cut(s) | 3028 |
| Fsp4HI | GCNGC | 6 cut(s) | 105, 366, 369, 1982, 2044, 2863 |
| FspI | TGCGCA | 2 cut(s) | 27, 267 |
| GlaI | GCGC | 7 cut(s) | 27, 267, 1562, 1778, 2807, 3422, 3458 |
| GluI | GCNGC | 6 cut(s) | 105, 366, 369, 1982, 2044, 2863 |
| HaeII | RGCGCY | 1 cut(s) | 2809 |
| HaeIII | GGCC | 5 cut(s) | 176, 1743, 1834, 1935, 3476 |
| HapII | CCGG | 8 cut(s) | 173, 678, 1580, 2773, 2886, 3035, 3071, 3437 |
| HgaI | GACGC | 1 cut(s) | 300 |
| HhaI | GCGC | 7 cut(s) | 28, 268, 1563, 1779, 2808, 3423, 3459 |
| Hin6I | GCGC | 7 cut(s) | 26, 266, 1561, 1777, 2806, 3421, 3457 |
| HinP1I | GCGC | 7 cut(s) | 26, 266, 1561, 1777, 2806, 3421, 3457 |
| HincII | GTYRAC | 2 cut(s) | 1473, 3193 |
| HindII | GTYRAC | 2 cut(s) | 1473, 3193 |
| HindIII | AAGCTT | 5 cut(s) | 203, 714, 2090, 2575, 3131 |
| HpaII | CCGG | 8 cut(s) | 173, 678, 1580, 2773, 2886, 3035, 3071, 3437 |
| HphI | GGTGA | 8 cut(s) | 944, 1739, 1940, 2068, 3106, 3266, 3314, 3451 |
| Hpy166II | GTNNAC | 5 cut(s) | 1473, 1541, 2017, 2892, 3193 |
| Hpy8I | GTNNAC | 5 cut(s) | 1473, 1541, 2017, 2892, 3193 |
| Hpy99I | CGWCG | 2 cut(s) | 2614, 2617 |
| HpyCH4III | ACNGT | 3 cut(s) | 634, 770, 2881 |
| HpyCH4IV | ACGT | 3 cut(s) | 391, 1428, 2535 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 1012, 1558, 1567, 1776, 1897, 2105, 3374 |
| HpySE526I | ACGT | 3 cut(s) | 391, 1428, 2535 |
| HspAI | GCGC | 7 cut(s) | 26, 266, 1561, 1777, 2806, 3421, 3457 |
| Kpn2I | TCCGGA | 1 cut(s) | 3034 |
| Ksp22I | TGATCA | 1 cut(s) | 934 |
| LguI | GCTCTTC | 1 cut(s) | 1091 |
| LmnI | GCTCC | 6 cut(s) | 1022, 1121, 2461, 2742, 2832, 3273 |
| Lsp1109I | GCAGC | 5 cut(s) | 355, 377, 1993, 2030, 2849 |
| MabI | ACCWGGT | 2 cut(s) | 2933, 3324 |
| MaeII | ACGT | 3 cut(s) | 391, 1428, 2535 |
| MaeIII | GTNAC | 7 cut(s) | 222, 1487, 1574, 2364, 2559, 2654, 2951 |
| MfeI | CAATTG | 1 cut(s) | 1530 |
| MflI | RGATCY | 5 cut(s) | 328, 1999, 2454, 2788, 3037 |
| MhlI | GDGCHC | 3 cut(s) | 411, 1223, 3028 |
| MlyI | GAGTC | 4 cut(s) | 535, 599, 690, 1669 |
| MmeI | TCCRAC | 2 cut(s) | 541, 1581 |
| Mph1103I | ATGCAT | 5 cut(s) | 605, 990, 1309, 1399, 1503 |
| MroI | TCCGGA | 1 cut(s) | 3034 |
| MroXI | GAANNNNTTC | 4 cut(s) | 618, 1626, 1803, 2082 |
| MslI | CAYNNNNRTG | 5 cut(s) | 99, 598, 1095, 1439, 3303 |
| MspA1I | CMGCKG | 3 cut(s) | 368, 1830, 1984 |
| MspI | CCGG | 8 cut(s) | 173, 678, 1580, 2773, 2886, 3035, 3071, 3437 |
| MunI | CAATTG | 1 cut(s) | 1530 |
| Mva1269I | GAATGC | 3 cut(s) | 284, 539, 2980 |
| MvaI | CCWGG | 6 cut(s) | 954, 1554, 1902, 2565, 2935, 3326 |
| MvnI | CGCG | 2 cut(s) | 294, 3423 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 1012, 1558, 1567, 1776, 1897, 2105, 3374 |
| NciI | CCSGG | 4 cut(s) | 1580, 2773, 2887, 3072 |
| NlaIV | GGNNCC | 6 cut(s) | 1198, 2213, 2463, 2500, 2731, 3039 |
| NmeAIII | GCCGAG | 1 cut(s) | 3502 |
| NmuCI | GTSAC | 2 cut(s) | 222, 2654 |
| NsbI | TGCGCA | 2 cut(s) | 27, 267 |
| NsiI | ATGCAT | 5 cut(s) | 605, 990, 1309, 1399, 1503 |
| NspI | RCATGY | 4 cut(s) | 32, 341, 1350, 1401 |
| NspV | TTCGAA | 2 cut(s) | 711, 2439 |
| PaeI | GCATGC | 1 cut(s) | 32 |
| PciI | ACATGT | 1 cut(s) | 337 |
| PciSI | GCTCTTC | 1 cut(s) | 1091 |
| PctI | GAATGC | 3 cut(s) | 284, 539, 2980 |
| PdmI | GAANNNNTTC | 4 cut(s) | 618, 1626, 1803, 2082 |
| PflFI | GACNNNGTC | 1 cut(s) | 2881 |
| PfoI | TCCNGGA | 1 cut(s) | 3070 |
| PkrI | GCNGC | 6 cut(s) | 106, 367, 370, 1983, 2045, 2864 |
| PleI | GAGTC | 4 cut(s) | 534, 598, 690, 1669 |
| PpsI | GAGTC | 4 cut(s) | 534, 598, 690, 1669 |
| PpuMI | RGGWCCY | 1 cut(s) | 877 |
| PscI | ACATGT | 1 cut(s) | 337 |
| PsiI | TTATAA | 1 cut(s) | 971 |
| Psp124BI | GAGCTC | 1 cut(s) | 3028 |
| Psp1406I | AACGTT | 2 cut(s) | 391, 1428 |
| Psp5II | RGGWCCY | 1 cut(s) | 877 |
| Psp6I | CCWGG | 6 cut(s) | 952, 1552, 1900, 2563, 2933, 3324 |
| PspEI | GGTNACC | 1 cut(s) | 1487 |
| PspGI | CCWGG | 6 cut(s) | 952, 1552, 1900, 2563, 2933, 3324 |
| PspN4I | GGNNCC | 6 cut(s) | 1198, 2213, 2463, 2500, 2731, 3039 |
| PspPI | GGNCC | 6 cut(s) | 175, 877, 950, 2211, 3474, 3527 |
| PspPPI | RGGWCCY | 1 cut(s) | 877 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 603, 635 |
| PsuI | RGATCY | 5 cut(s) | 328, 1999, 2454, 2788, 3037 |
| PsyI | GACNNNGTC | 1 cut(s) | 2881 |
| PvuII | CAGCTG | 3 cut(s) | 368, 1830, 1984 |
| RsaI | GTAC | 8 cut(s) | 342, 871, 2641, 2932, 3044, 3056, 3287, 3396 |
| RsaNI | GTAC | 8 cut(s) | 341, 870, 2640, 2931, 3043, 3055, 3286, 3395 |
| RseI | CAYNNNNRTG | 5 cut(s) | 99, 598, 1095, 1439, 3303 |
| SacI | GAGCTC | 1 cut(s) | 3028 |
| SapI | GCTCTTC | 1 cut(s) | 1091 |
| SatI | GCNGC | 6 cut(s) | 105, 366, 369, 1982, 2044, 2863 |
| Sau96I | GGNCC | 6 cut(s) | 175, 877, 950, 2211, 3474, 3527 |
| ScaI | AGTACT | 1 cut(s) | 3287 |
| SchI | GAGTC | 4 cut(s) | 535, 599, 690, 1669 |
| SduI | GDGCHC | 3 cut(s) | 411, 1223, 3028 |
| SexAI | ACCWGGT | 2 cut(s) | 2933, 3324 |
| SfcI | CTRYAG | 2 cut(s) | 834, 1079 |
| SfuI | TTCGAA | 2 cut(s) | 711, 2439 |
| SinI | GGWCC | 4 cut(s) | 877, 950, 2211, 3527 |
| SmiMI | CAYNNNNRTG | 5 cut(s) | 99, 598, 1095, 1439, 3303 |
| SmlI | CTYRAG | 5 cut(s) | 410, 538, 587, 1680, 3372 |
| SmoI | CTYRAG | 5 cut(s) | 410, 538, 587, 1680, 3372 |
| SphI | GCATGC | 1 cut(s) | 32 |
| SsiI | CCGC | 7 cut(s) | 76, 105, 294, 1119, 2545, 3137, 3423 |
| SspI | AATATT | 1 cut(s) | 1853 |
| SstI | GAGCTC | 1 cut(s) | 3028 |
| StyI | CCWWGG | 2 cut(s) | 1757, 1943 |
| TaaI | ACNGT | 3 cut(s) | 634, 770, 2881 |
| TaiI | ACGT | 3 cut(s) | 394, 1431, 2538 |
| TaqII | GACCGA | 2 cut(s) | 2605, 3497 |
| TatI | WGTACW | 2 cut(s) | 3285, 3394 |
| TauI | GCSGC | 1 cut(s) | 107 |
| TscAI | CASTG | 4 cut(s) | 637, 2185, 2385, 2886 |
| TseFI | GTSAC | 2 cut(s) | 222, 2654 |
| TseI | GCWGC | 5 cut(s) | 365, 368, 1981, 2043, 2862 |
| Tsp45I | GTSAC | 2 cut(s) | 222, 2654 |
| TspGWI | ACGGA | 4 cut(s) | 478, 2598, 2642, 3030 |
| TspRI | CASTG | 4 cut(s) | 637, 2185, 2385, 2886 |
| Tth111I | GACNNNGTC | 1 cut(s) | 2881 |
| VpaK11BI | GGWCC | 4 cut(s) | 877, 950, 2211, 3527 |
| XapI | RAATTY | 4 cut(s) | 1170, 1709, 2504, 3081 |
| XbaI | TCTAGA | 1 cut(s) | 2839 |
| XceI | RCATGY | 4 cut(s) | 32, 341, 1350, 1401 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 2277 |
| XmaJI | CCTAGG | 1 cut(s) | 1943 |
| XmnI | GAANNNNTTC | 4 cut(s) | 618, 1626, 1803, 2082 |
| ZrmI | AGTACT | 1 cut(s) | 3287 |
| Zsp2I | ATGCAT | 5 cut(s) | 605, 990, 1309, 1399, 1503 |