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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 2 cut(s) | 180, 400 |
| AccII | CGCG | 1 cut(s) | 186 |
| AciI | CCGC | 5 cut(s) | 92, 184, 186, 232, 292 |
| AclWI | GGATC | 1 cut(s) | 460 |
| AcoI | YGGCCR | 1 cut(s) | 109 |
| AcsI | RAATTY | 2 cut(s) | 137, 324 |
| AcyI | GRCGYC | 1 cut(s) | 181 |
| AfaI | GTAC | 3 cut(s) | 96, 444, 461 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 238, 456 |
| AflII | CTTAAG | 1 cut(s) | 392 |
| AgsI | TTSAA | 3 cut(s) | 143, 340, 508 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 429 |
| AloI | GAACNNNNNNTCC | 1 cut(s) | 488 |
| AluBI | AGCT | 2 cut(s) | 263, 345 |
| AluI | AGCT | 2 cut(s) | 263, 345 |
| Alw26I | GTCTC | 1 cut(s) | 382 |
| AlwI | GGATC | 1 cut(s) | 460 |
| AoxI | GGCC | 2 cut(s) | 109, 115 |
| ApeKI | GCWGC | 1 cut(s) | 306 |
| ApoI | RAATTY | 2 cut(s) | 137, 324 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 147, 324 |
| AspLEI | GCGC | 1 cut(s) | 183 |
| AsuC2I | CCSGG | 1 cut(s) | 451 |
| AsuHPI | GGTGA | 2 cut(s) | 221, 424 |
| AsuII | TTCGAA | 1 cut(s) | 18 |
| BalI | TGGCCA | 1 cut(s) | 111 |
| BanI | GGYRCC | 2 cut(s) | 180, 400 |
| BbvI | GCAGC | 1 cut(s) | 293 |
| BcnI | CCSGG | 1 cut(s) | 451 |
| BcoDI | GTCTC | 1 cut(s) | 382 |
| BfaI | CTAG | 4 cut(s) | 174, 207, 249, 434 |
| BfoI | RGCGCY | 1 cut(s) | 184 |
| BfrI | CTTAAG | 1 cut(s) | 392 |
| BisI | GCNGC | 3 cut(s) | 184, 187, 307 |
| BlsI | GCNGC | 3 cut(s) | 185, 188, 308 |
| BmcAI | AGTACT | 1 cut(s) | 444 |
| Bme1390I | CCNGG | 1 cut(s) | 451 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 429 |
| BmiI | GGNNCC | 3 cut(s) | 182, 296, 402 |
| BmrFI | CCNGG | 1 cut(s) | 451 |
| BmsI | GCATC | 5 cut(s) | 118, 193, 235, 279, 361 |
| BpmI | CTGGAG | 1 cut(s) | 406 |
| Bpu14I | TTCGAA | 1 cut(s) | 18 |
| BpuMI | CCSGG | 1 cut(s) | 451 |
| BsaHI | GRCGYC | 1 cut(s) | 181 |
| BsaJI | CCNNGG | 3 cut(s) | 112, 184, 298 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 238, 456 |
| Bse118I | RCCGGY | 1 cut(s) | 403 |
| BseDI | CCNNGG | 3 cut(s) | 112, 184, 298 |
| BseGI | GGATG | 4 cut(s) | 10, 205, 247, 291 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 238, 456 |
| BseXI | GCAGC | 1 cut(s) | 293 |
| BsgI | GTGCAG | 1 cut(s) | 402 |
| Bsh1236I | CGCG | 1 cut(s) | 186 |
| BshFI | GGCC | 2 cut(s) | 111, 117 |
| BshNI | GGYRCC | 2 cut(s) | 180, 400 |
| BsiSI | CCGG | 2 cut(s) | 404, 450 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 238, 456 |
| BsmAI | GTCTC | 1 cut(s) | 382 |
| BsnI | GGCC | 2 cut(s) | 111, 117 |
| Bsp119I | TTCGAA | 1 cut(s) | 18 |
| Bsp143I | GATC | 2 cut(s) | 436, 465 |
| BspACI | CCGC | 5 cut(s) | 92, 184, 186, 232, 292 |
| BspANI | GGCC | 2 cut(s) | 111, 117 |
| BspFNI | CGCG | 1 cut(s) | 186 |
| BspLI | GGNNCC | 3 cut(s) | 182, 296, 402 |
| BspPI | GGATC | 1 cut(s) | 460 |
| BspT104I | TTCGAA | 1 cut(s) | 18 |
| BspT107I | GGYRCC | 2 cut(s) | 180, 400 |
| BspTI | CTTAAG | 1 cut(s) | 392 |
| BsrFI | RCCGGY | 1 cut(s) | 403 |
| BssAI | RCCGGY | 1 cut(s) | 403 |
| BssECI | CCNNGG | 3 cut(s) | 112, 184, 298 |
| BssMI | GATC | 2 cut(s) | 436, 465 |
| BssNI | GRCGYC | 1 cut(s) | 181 |
| BssT1I | CCWWGG | 1 cut(s) | 112 |
| Bst4CI | ACNGT | 4 cut(s) | 69, 222, 400, 447 |
| Bst6I | CTCTTC | 2 cut(s) | 357, 449 |
| BstACI | GRCGYC | 1 cut(s) | 181 |
| BstAFI | CTTAAG | 1 cut(s) | 392 |
| BstBI | TTCGAA | 1 cut(s) | 18 |
| BstDSI | CCRYGG | 1 cut(s) | 184 |
| BstF5I | GGATG | 4 cut(s) | 10, 205, 247, 291 |
| BstFNI | CGCG | 1 cut(s) | 186 |
| BstH2I | RGCGCY | 1 cut(s) | 184 |
| BstHHI | GCGC | 1 cut(s) | 183 |
| BstKTI | GATC | 2 cut(s) | 439, 468 |
| BstMAI | GTCTC | 1 cut(s) | 382 |
| BstMBI | GATC | 2 cut(s) | 436, 465 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 342 |
| BstSCI | CCNGG | 1 cut(s) | 449 |
| BstUI | CGCG | 1 cut(s) | 186 |
| BstV1I | GCAGC | 1 cut(s) | 293 |
| BstX2I | RGATCY | 1 cut(s) | 465 |
| BstYI | RGATCY | 1 cut(s) | 465 |
| BsuRI | GGCC | 2 cut(s) | 111, 117 |
| BtgI | CCRYGG | 1 cut(s) | 184 |
| BtsCI | GGATG | 4 cut(s) | 10, 205, 247, 291 |
| CfoI | GCGC | 1 cut(s) | 183 |
| Cfr10I | RCCGGY | 1 cut(s) | 403 |
| Cfr42I | CCGCGG | 1 cut(s) | 187 |
| Csp6I | GTAC | 3 cut(s) | 95, 443, 460 |
| CviJI | RGCY | 5 cut(s) | 111, 117, 263, 306, 345 |
| CviKI_1 | RGCY | 5 cut(s) | 111, 117, 263, 306, 345 |
| CviQI | GTAC | 3 cut(s) | 95, 443, 460 |
| DinI | GGCGCC | 1 cut(s) | 182 |
| DpnI | GATC | 2 cut(s) | 438, 467 |
| DpnII | GATC | 2 cut(s) | 436, 465 |
| DriI | GACNNNNNGTC | 1 cut(s) | 429 |
| EaeI | YGGCCR | 1 cut(s) | 109 |
| Eam1104I | CTCTTC | 2 cut(s) | 357, 449 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 429 |
| EarI | CTCTTC | 2 cut(s) | 357, 449 |
| Eco130I | CCWWGG | 1 cut(s) | 112 |
| EcoT14I | CCWWGG | 1 cut(s) | 112 |
| EgeI | GGCGCC | 1 cut(s) | 182 |
| EheI | GGCGCC | 1 cut(s) | 182 |
| ErhI | CCWWGG | 1 cut(s) | 112 |
| FaiI | YATR | 4 cut(s) | 26, 108, 311, 353 |
| Fnu4HI | GCNGC | 3 cut(s) | 184, 187, 307 |
| FokI | GGATG | 4 cut(s) | 17, 212, 254, 298 |
| Fsp4HI | GCNGC | 3 cut(s) | 184, 187, 307 |
| FspBI | CTAG | 4 cut(s) | 174, 207, 249, 434 |
| GlaI | GCGC | 1 cut(s) | 182 |
| GluI | GCNGC | 3 cut(s) | 184, 187, 307 |
| GsuI | CTGGAG | 1 cut(s) | 406 |
| HaeII | RGCGCY | 1 cut(s) | 184 |
| HaeIII | GGCC | 2 cut(s) | 111, 117 |
| HapII | CCGG | 2 cut(s) | 404, 450 |
| HhaI | GCGC | 1 cut(s) | 183 |
| Hin1I | GRCGYC | 1 cut(s) | 181 |
| Hin6I | GCGC | 1 cut(s) | 181 |
| HinP1I | GCGC | 1 cut(s) | 181 |
| HincII | GTYRAC | 1 cut(s) | 218 |
| HindII | GTYRAC | 1 cut(s) | 218 |
| HinfI | GANTC | 1 cut(s) | 58 |
| HpaII | CCGG | 2 cut(s) | 404, 450 |
| HphI | GGTGA | 2 cut(s) | 221, 424 |
| Hpy166II | GTNNAC | 3 cut(s) | 65, 155, 218 |
| Hpy188I | TCNGA | 1 cut(s) | 302 |
| Hpy188III | TCNNGA | 3 cut(s) | 62, 329, 434 |
| Hpy8I | GTNNAC | 3 cut(s) | 65, 155, 218 |
| HpyCH4III | ACNGT | 4 cut(s) | 69, 222, 400, 447 |
| HpyCH4IV | ACGT | 1 cut(s) | 78 |
| HpyCH4V | TGCA | 4 cut(s) | 11, 309, 374, 419 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 342 |
| HpySE526I | ACGT | 1 cut(s) | 78 |
| Hsp92I | GRCGYC | 1 cut(s) | 181 |
| HspAI | GCGC | 1 cut(s) | 181 |
| KasI | GGCGCC | 1 cut(s) | 180 |
| KspI | CCGCGG | 1 cut(s) | 187 |
| Kzo9I | GATC | 2 cut(s) | 436, 465 |
| LmnI | GCTCC | 1 cut(s) | 136 |
| LpnPI | CCDG | 3 cut(s) | 370, 417, 463 |
| Lsp1109I | GCAGC | 1 cut(s) | 293 |
| LweI | GCATC | 5 cut(s) | 118, 193, 235, 279, 361 |
| MaeI | CTAG | 4 cut(s) | 174, 207, 249, 434 |
| MaeII | ACGT | 1 cut(s) | 78 |
| MaeIII | GTNAC | 3 cut(s) | 227, 270, 412 |
| MalI | GATC | 2 cut(s) | 438, 467 |
| MboI | GATC | 2 cut(s) | 436, 465 |
| MboII | GAAGA | 3 cut(s) | 332, 374, 466 |
| MflI | RGATCY | 1 cut(s) | 465 |
| MlsI | TGGCCA | 1 cut(s) | 111 |
| MluCI | AATT | 4 cut(s) | 21, 137, 324, 490 |
| MluNI | TGGCCA | 1 cut(s) | 111 |
| Mly113I | GGCGCC | 1 cut(s) | 181 |
| MnlI | CCTC | 7 cut(s) | 171, 190, 232, 276, 296, 308, 450 |
| Mox20I | TGGCCA | 1 cut(s) | 111 |
| MroXI | GAANNNNTTC | 2 cut(s) | 147, 324 |
| MscI | TGGCCA | 1 cut(s) | 111 |
| MseI | TTAA | 3 cut(s) | 51, 393, 489 |
| Msp20I | TGGCCA | 1 cut(s) | 111 |
| MspA1I | CMGCKG | 1 cut(s) | 186 |
| MspCI | CTTAAG | 1 cut(s) | 392 |
| MspI | CCGG | 2 cut(s) | 404, 450 |
| MspR9I | CCNGG | 1 cut(s) | 451 |
| MvnI | CGCG | 1 cut(s) | 186 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 342 |
| NarI | GGCGCC | 1 cut(s) | 181 |
| NciI | CCSGG | 1 cut(s) | 451 |
| NdeII | GATC | 2 cut(s) | 436, 465 |
| NlaIV | GGNNCC | 3 cut(s) | 182, 296, 402 |
| NmuCI | GTSAC | 3 cut(s) | 227, 270, 412 |
| NspV | TTCGAA | 1 cut(s) | 18 |
| PdmI | GAANNNNTTC | 2 cut(s) | 147, 324 |
| PfeI | GAWTC | 1 cut(s) | 58 |
| PfoI | TCCNGGA | 1 cut(s) | 449 |
| PkrI | GCNGC | 3 cut(s) | 185, 188, 308 |
| PluTI | GGCGCC | 1 cut(s) | 184 |
| PspN4I | GGNNCC | 3 cut(s) | 182, 296, 402 |
| PsuI | RGATCY | 1 cut(s) | 465 |
| RsaI | GTAC | 3 cut(s) | 96, 444, 461 |
| RsaNI | GTAC | 3 cut(s) | 95, 443, 460 |
| SacII | CCGCGG | 1 cut(s) | 187 |
| SaqAI | TTAA | 3 cut(s) | 51, 393, 489 |
| SatI | GCNGC | 3 cut(s) | 184, 187, 307 |
| Sau3AI | GATC | 2 cut(s) | 436, 465 |
| ScaI | AGTACT | 1 cut(s) | 444 |
| ScrFI | CCNGG | 1 cut(s) | 451 |
| SetI | ASST | 7 cut(s) | 81, 89, 265, 300, 347, 433, 461 |
| SfaNI | GCATC | 5 cut(s) | 118, 193, 235, 279, 361 |
| SfoI | GGCGCC | 1 cut(s) | 182 |
| Sfr303I | CCGCGG | 1 cut(s) | 187 |
| SfuI | TTCGAA | 1 cut(s) | 18 |
| SgrBI | CCGCGG | 1 cut(s) | 187 |
| SmlI | CTYRAG | 1 cut(s) | 392 |
| SmoI | CTYRAG | 1 cut(s) | 392 |
| Sse9I | AATT | 4 cut(s) | 21, 137, 324, 490 |
| SsiI | CCGC | 5 cut(s) | 92, 184, 186, 232, 292 |
| SspDI | GGCGCC | 1 cut(s) | 180 |
| SspMI | CTAG | 4 cut(s) | 174, 207, 249, 434 |
| StyD4I | CCNGG | 1 cut(s) | 449 |
| StyI | CCWWGG | 1 cut(s) | 112 |
| TaaI | ACNGT | 4 cut(s) | 69, 222, 400, 447 |
| TaiI | ACGT | 1 cut(s) | 81 |
| TaqI | TCGA | 1 cut(s) | 18 |
| TasI | AATT | 4 cut(s) | 21, 137, 324, 490 |
| TatI | WGTACW | 1 cut(s) | 442 |
| TauI | GCSGC | 2 cut(s) | 186, 189 |
| TfiI | GAWTC | 1 cut(s) | 58 |
| Tru1I | TTAA | 3 cut(s) | 51, 393, 489 |
| Tru9I | TTAA | 3 cut(s) | 51, 393, 489 |
| TseFI | GTSAC | 3 cut(s) | 227, 270, 412 |
| TseI | GCWGC | 1 cut(s) | 306 |
| Tsp45I | GTSAC | 3 cut(s) | 227, 270, 412 |
| TspDTI | ATGAA | 1 cut(s) | 462 |
| TspGWI | ACGGA | 2 cut(s) | 93, 436 |
| Vha464I | CTTAAG | 1 cut(s) | 392 |
| XapI | RAATTY | 2 cut(s) | 137, 324 |
| XbaI | TCTAGA | 1 cut(s) | 433 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 476 |
| XmnI | GAANNNNTTC | 2 cut(s) | 147, 324 |
| XspI | CTAG | 4 cut(s) | 174, 207, 249, 434 |
| ZrmI | AGTACT | 1 cut(s) | 444 |