RESISTANCE protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 759 |
| AatII | GACGTC | 1 cut(s) | 772 |
| Acc16I | TGCGCA | 1 cut(s) | 726 |
| AccI | GTMKAC | 1 cut(s) | 795 |
| AccII | CGCG | 1 cut(s) | 939 |
| AciI | CCGC | 2 cut(s) | 827, 2319 |
| AclI | AACGTT | 1 cut(s) | 1032 |
| AcoI | YGGCCR | 1 cut(s) | 802 |
| AcuI | CTGAAG | 6 cut(s) | 2552, 3368, 3506, 3543, 3621, 3699 |
| AcyI | GRCGYC | 1 cut(s) | 769 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 121, 304, 2364, 2400, 2627 |
| AflII | CTTAAG | 1 cut(s) | 2413 |
| AflIII | ACRYGT | 2 cut(s) | 1000, 1266 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 3770 |
| AhlI | ACTAGT | 1 cut(s) | 3769 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 2731, 2763 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 828, 860 |
| Alw21I | GWGCWC | 2 cut(s) | 653, 2490 |
| Ama87I | CYCGRG | 3 cut(s) | 1631, 1766, 1991 |
| AoxI | GGCC | 3 cut(s) | 802, 1303, 2846 |
| ApaI | GGGCCC | 1 cut(s) | 2850 |
| ApeKI | GCWGC | 5 cut(s) | 1959, 2316, 2520, 2646, 3326 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 678, 1032 |
| AspLEI | GCGC | 1 cut(s) | 727 |
| AspS9I | GGNCC | 3 cut(s) | 2846, 2847, 3171 |
| AsuC2I | CCSGG | 3 cut(s) | 960, 1992, 1993 |
| AsuHPI | GGTGA | 9 cut(s) | 2065, 2369, 2885, 3352, 3430, 3490, 3527, 3605, 3683 |
| AsuII | TTCGAA | 3 cut(s) | 153, 2251, 2775 |
| AvaI | CYCGRG | 3 cut(s) | 1631, 1766, 1991 |
| AvaII | GGWCC | 1 cut(s) | 3171 |
| AxyI | CCTNAGG | 1 cut(s) | 2337 |
| BaeGI | GKGCMC | 1 cut(s) | 2850 |
| BalI | TGGCCA | 1 cut(s) | 804 |
| BanII | GRGCYC | 3 cut(s) | 960, 2490, 2850 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 2490, 2522 |
| BbsI | GAAGAC | 5 cut(s) | 970, 2498, 2540, 2688, 3769 |
| Bbv12I | GWGCWC | 2 cut(s) | 653, 2490 |
| BbvCI | CCTCAGC | 4 cut(s) | 1437, 1572, 1707, 2262 |
| BbvI | GCAGC | 5 cut(s) | 1946, 2328, 2507, 2658, 3338 |
| BccI | CCATC | 6 cut(s) | 368, 784, 827, 1292, 2388, 2510 |
| BceAI | ACGGC | 2 cut(s) | 282, 1822 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 1612, 1646, 1747, 1781 |
| BclI | TGATCA | 1 cut(s) | 2374 |
| BcnI | CCSGG | 3 cut(s) | 960, 1992, 1993 |
| BcuI | ACTAGT | 1 cut(s) | 3769 |
| BfaI | CTAG | 5 cut(s) | 356, 522, 1680, 2442, 3770 |
| BfmI | CTRYAG | 1 cut(s) | 75 |
| BfrI | CTTAAG | 1 cut(s) | 2413 |
| BglII | AGATCT | 1 cut(s) | 240 |
| BisI | GCNGC | 6 cut(s) | 828, 1960, 2317, 2521, 2647, 3327 |
| BlpI | GCTNAGC | 2 cut(s) | 293, 2225 |
| BlsI | GCNGC | 6 cut(s) | 829, 1961, 2318, 2522, 2648, 3328 |
| BmcAI | AGTACT | 2 cut(s) | 2301, 2840 |
| Bme1390I | CCNGG | 3 cut(s) | 960, 1992, 1993 |
| Bme18I | GGWCC | 1 cut(s) | 3171 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 3770 |
| BmeT110I | CYCGRG | 3 cut(s) | 1631, 1766, 1991 |
| BmgT120I | GGNCC | 3 cut(s) | 2846, 2847, 3171 |
| BmiI | GGNNCC | 4 cut(s) | 208, 601, 2848, 2894 |
| BmrFI | CCNGG | 3 cut(s) | 960, 1992, 1993 |
| BmrI | ACTGGG | 1 cut(s) | 415 |
| BmsI | GCATC | 9 cut(s) | 1503, 1638, 1773, 2205, 2626, 2753, 2984, 2996, 3262 |
| BmuI | ACTGGG | 1 cut(s) | 415 |
| BpiI | GAAGAC | 5 cut(s) | 970, 2498, 2540, 2688, 3769 |
| BpmI | CTGGAG | 6 cut(s) | 358, 381, 588, 1222, 1258, 3063 |
| Bpu10I | CCTNAGC | 5 cut(s) | 120, 1437, 1572, 1707, 2262 |
| Bpu1102I | GCTNAGC | 2 cut(s) | 293, 2225 |
| Bpu14I | TTCGAA | 3 cut(s) | 153, 2251, 2775 |
| BpuEI | CTTGAG | 5 cut(s) | 401, 1481, 1883, 2165, 3796 |
| BpuMI | CCSGG | 3 cut(s) | 960, 1992, 1993 |
| Bsa29I | ATCGAT | 2 cut(s) | 351, 869 |
| BsaBI | GATNNNNATC | 2 cut(s) | 1743, 2379 |
| BsaHI | GRCGYC | 1 cut(s) | 769 |
| BsaI | GGTCTC | 3 cut(s) | 864, 1857, 3208 |
| BsaJI | CCNNGG | 3 cut(s) | 1991, 1992, 2311 |
| BsaXI | ACNNNNNCTCC | 8 cut(s) | 1256, 1286, 1823, 1853, 2292, 2322, 2472, 2502 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 121, 304, 2364, 2400, 2627 |
| Bse21I | CCTNAGG | 1 cut(s) | 2337 |
| Bse3DI | GCAATG | 4 cut(s) | 2779, 3369, 3544, 3700 |
| Bse8I | GATNNNNATC | 2 cut(s) | 1743, 2379 |
| BseCI | ATCGAT | 2 cut(s) | 351, 869 |
| BseDI | CCNNGG | 3 cut(s) | 1991, 1992, 2311 |
| BseGI | GGATG | 5 cut(s) | 1303, 1418, 1553, 2987, 3255 |
| BseJI | GATNNNNATC | 2 cut(s) | 1743, 2379 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 121, 304, 2364, 2400, 2627 |
| BseMI | GCAATG | 4 cut(s) | 2779, 3369, 3544, 3700 |
| BseSI | GKGCMC | 1 cut(s) | 2850 |
| BseXI | GCAGC | 5 cut(s) | 1946, 2328, 2507, 2658, 3338 |
| BsgI | GTGCAG | 3 cut(s) | 1110, 1344, 1945 |
| Bsh1236I | CGCG | 1 cut(s) | 939 |
| BshFI | GGCC | 3 cut(s) | 804, 1305, 2848 |
| BshVI | ATCGAT | 2 cut(s) | 351, 869 |
| BsiHKAI | GWGCWC | 2 cut(s) | 653, 2490 |
| BsiHKCI | CYCGRG | 3 cut(s) | 1631, 1766, 1991 |
| BsiSI | CCGG | 2 cut(s) | 960, 1992 |
| BslFI | GGGAC | 2 cut(s) | 780, 2171 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 121, 304, 2364, 2400, 2627 |
| BsmFI | GGGAC | 2 cut(s) | 780, 2171 |
| BsmI | GAATGC | 5 cut(s) | 573, 887, 1349, 2092, 3026 |
| BsnI | GGCC | 3 cut(s) | 804, 1305, 2848 |
| Bso31I | GGTCTC | 3 cut(s) | 864, 1857, 3208 |
| BsoBI | CYCGRG | 3 cut(s) | 1631, 1766, 1991 |
| Bsp119I | TTCGAA | 3 cut(s) | 153, 2251, 2775 |
| Bsp120I | GGGCCC | 1 cut(s) | 2846 |
| Bsp1286I | GDGCHC | 4 cut(s) | 653, 960, 2490, 2850 |
| Bsp1720I | GCTNAGC | 2 cut(s) | 293, 2225 |
| Bsp19I | CCATGG | 1 cut(s) | 2311 |
| Bsp68I | TCGCGA | 1 cut(s) | 939 |
| BspACI | CCGC | 2 cut(s) | 827, 2319 |
| BspANI | GGCC | 3 cut(s) | 804, 1305, 2848 |
| BspDI | ATCGAT | 2 cut(s) | 351, 869 |
| BspFNI | CGCG | 1 cut(s) | 939 |
| BspHI | TCATGA | 3 cut(s) | 1855, 3058, 3091 |
| BspLI | GGNNCC | 4 cut(s) | 208, 601, 2848, 2894 |
| BspQI | GCTCTTC | 2 cut(s) | 486, 948 |
| BspT104I | TTCGAA | 3 cut(s) | 153, 2251, 2775 |
| BspTI | CTTAAG | 1 cut(s) | 2413 |
| BspTNI | GGTCTC | 3 cut(s) | 864, 1857, 3208 |
| BsrDI | GCAATG | 4 cut(s) | 2779, 3369, 3544, 3700 |
| BssECI | CCNNGG | 3 cut(s) | 1991, 1992, 2311 |
| BssNI | GRCGYC | 1 cut(s) | 769 |
| BssT1I | CCWWGG | 1 cut(s) | 2311 |
| Bst4CI | ACNGT | 6 cut(s) | 76, 1485, 2240, 2539, 3120, 3191 |
| Bst6I | CTCTTC | 8 cut(s) | 148, 486, 948, 1191, 2757, 2829, 3150, 3786 |
| BstACI | GRCGYC | 1 cut(s) | 769 |
| BstAFI | CTTAAG | 1 cut(s) | 2413 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1920 |
| BstBI | TTCGAA | 3 cut(s) | 153, 2251, 2775 |
| BstC8I | GCNNGC | 3 cut(s) | 751, 1925, 3324 |
| BstDSI | CCRYGG | 1 cut(s) | 2311 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 119 |
| BstF5I | GGATG | 5 cut(s) | 1303, 1418, 1553, 2987, 3255 |
| BstFNI | CGCG | 1 cut(s) | 939 |
| BstHHI | GCGC | 1 cut(s) | 727 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 78, 1821, 1920, 2443, 3272 |
| BstNSI | RCATGY | 5 cut(s) | 753, 782, 1004, 1270, 3326 |
| BstSCI | CCNGG | 3 cut(s) | 958, 1990, 1991 |
| BstSFI | CTRYAG | 1 cut(s) | 75 |
| BstSLI | GKGCMC | 1 cut(s) | 2850 |
| BstUI | CGCG | 1 cut(s) | 939 |
| BstV1I | GCAGC | 5 cut(s) | 1946, 2328, 2507, 2658, 3338 |
| BstV2I | GAAGAC | 5 cut(s) | 970, 2498, 2540, 2688, 3769 |
| BstX2I | RGATCY | 5 cut(s) | 240, 1402, 1537, 1672, 2803 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 812 |
| BstYI | RGATCY | 5 cut(s) | 240, 1402, 1537, 1672, 2803 |
| Bsu15I | ATCGAT | 2 cut(s) | 351, 869 |
| Bsu36I | CCTNAGG | 1 cut(s) | 2337 |
| BsuRI | GGCC | 3 cut(s) | 804, 1305, 2848 |
| BsuTUI | ATCGAT | 2 cut(s) | 351, 869 |
| BtgI | CCRYGG | 1 cut(s) | 2311 |
| BtgZI | GCGATG | 5 cut(s) | 3404, 3464, 3579, 3630, 3657 |
| BtsCI | GGATG | 5 cut(s) | 1303, 1418, 1553, 2987, 3255 |
| BtuMI | TCGCGA | 1 cut(s) | 939 |
| Cac8I | GCNNGC | 3 cut(s) | 751, 1925, 3324 |
| CciI | TCATGA | 3 cut(s) | 1855, 3058, 3091 |
| CfoI | GCGC | 1 cut(s) | 727 |
| Cfr13I | GGNCC | 3 cut(s) | 2846, 2847, 3171 |
| Cfr9I | CCCGGG | 1 cut(s) | 1991 |
| ClaI | ATCGAT | 2 cut(s) | 351, 869 |
| CseI | GACGC | 4 cut(s) | 485, 975, 2098, 2682 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 614, 649 |
| DraI | TTTAAA | 4 cut(s) | 1447, 1582, 1717, 2758 |
| DriI | GACNNNNNGTC | 1 cut(s) | 3770 |
| EaeI | YGGCCR | 1 cut(s) | 802 |
| Eam1104I | CTCTTC | 8 cut(s) | 148, 486, 948, 1191, 2757, 2829, 3150, 3786 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 3770 |
| EarI | CTCTTC | 8 cut(s) | 148, 486, 948, 1191, 2757, 2829, 3150, 3786 |
| Ecl136II | GAGCTC | 1 cut(s) | 2488 |
| Eco130I | CCWWGG | 1 cut(s) | 2311 |
| Eco24I | GRGCYC | 3 cut(s) | 960, 2490, 2850 |
| Eco31I | GGTCTC | 3 cut(s) | 864, 1857, 3208 |
| Eco32I | GATATC | 2 cut(s) | 994, 1211 |
| Eco47I | GGWCC | 1 cut(s) | 3171 |
| Eco53kI | GAGCTC | 1 cut(s) | 2488 |
| Eco57I | CTGAAG | 6 cut(s) | 2552, 3368, 3506, 3543, 3621, 3699 |
| Eco81I | CCTNAGG | 1 cut(s) | 2337 |
| Eco88I | CYCGRG | 3 cut(s) | 1631, 1766, 1991 |
| EcoICRI | GAGCTC | 1 cut(s) | 2488 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 119 |
| EcoO109I | RGGNCCY | 1 cut(s) | 2847 |
| EcoRI | GAATTC | 1 cut(s) | 1799 |
| EcoRV | GATATC | 2 cut(s) | 994, 1211 |
| EcoT14I | CCWWGG | 1 cut(s) | 2311 |
| EcoT22I | ATGCAT | 1 cut(s) | 903 |
| EcoT38I | GRGCYC | 3 cut(s) | 960, 2490, 2850 |
| ErhI | CCWWGG | 1 cut(s) | 2311 |
| FalI | AAGNNNNNCTT | 8 cut(s) | 113, 145, 1799, 1831, 1852, 1884, 1903, 1935 |
| FaqI | GGGAC | 2 cut(s) | 780, 2171 |
| FbaI | TGATCA | 1 cut(s) | 2374 |
| FblI | GTMKAC | 1 cut(s) | 795 |
| Fnu4HI | GCNGC | 6 cut(s) | 828, 1960, 2317, 2521, 2647, 3327 |
| FokI | GGATG | 5 cut(s) | 1310, 1425, 1560, 2974, 3262 |
| FriOI | GRGCYC | 3 cut(s) | 960, 2490, 2850 |
| Fsp4HI | GCNGC | 6 cut(s) | 828, 1960, 2317, 2521, 2647, 3327 |
| FspBI | CTAG | 5 cut(s) | 356, 522, 1680, 2442, 3770 |
| FspI | TGCGCA | 1 cut(s) | 726 |
| GlaI | GCGC | 1 cut(s) | 726 |
| GluI | GCNGC | 6 cut(s) | 828, 1960, 2317, 2521, 2647, 3327 |
| GsuI | CTGGAG | 6 cut(s) | 358, 381, 588, 1222, 1258, 3063 |
| HaeIII | GGCC | 3 cut(s) | 804, 1305, 2848 |
| HapII | CCGG | 2 cut(s) | 960, 1992 |
| HgaI | GACGC | 4 cut(s) | 485, 975, 2098, 2682 |
| HhaI | GCGC | 1 cut(s) | 727 |
| Hin1I | GRCGYC | 1 cut(s) | 769 |
| Hin6I | GCGC | 1 cut(s) | 725 |
| HinP1I | GCGC | 1 cut(s) | 725 |
| HindIII | AAGCTT | 3 cut(s) | 156, 1813, 2623 |
| HpaII | CCGG | 2 cut(s) | 960, 1992 |
| HphI | GGTGA | 9 cut(s) | 2065, 2369, 2885, 3352, 3430, 3490, 3527, 3605, 3683 |
| Hpy166II | GTNNAC | 3 cut(s) | 796, 981, 3211 |
| Hpy8I | GTNNAC | 3 cut(s) | 796, 981, 3211 |
| Hpy99I | CGWCG | 3 cut(s) | 774, 2505, 3750 |
| HpyAV | CCTTC | 6 cut(s) | 1514, 1649, 2480, 2705, 2818, 2948 |
| HpyCH4III | ACNGT | 6 cut(s) | 76, 1485, 2240, 2539, 3120, 3191 |
| HpyCH4IV | ACGT | 5 cut(s) | 689, 769, 1032, 1351, 2500 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 78, 1821, 1920, 2443, 3272 |
| HpySE526I | ACGT | 5 cut(s) | 689, 769, 1032, 1351, 2500 |
| Hsp92I | GRCGYC | 1 cut(s) | 769 |
| HspAI | GCGC | 1 cut(s) | 725 |
| Ksp22I | TGATCA | 1 cut(s) | 2374 |
| LguI | GCTCTTC | 2 cut(s) | 486, 948 |
| LmnI | GCTCC | 6 cut(s) | 206, 648, 1984, 2403, 2493, 2643 |
| Lsp1109I | GCAGC | 5 cut(s) | 1946, 2328, 2507, 2658, 3338 |
| LweI | GCATC | 9 cut(s) | 1503, 1638, 1773, 2205, 2626, 2753, 2984, 2996, 3262 |
| MaeI | CTAG | 5 cut(s) | 356, 522, 1680, 2442, 3770 |
| MaeII | ACGT | 5 cut(s) | 689, 769, 1032, 1351, 2500 |
| MaeIII | GTNAC | 6 cut(s) | 332, 391, 1282, 2526, 2854, 3193 |
| MfeI | CAATTG | 3 cut(s) | 215, 930, 3067 |
| MflI | RGATCY | 5 cut(s) | 240, 1402, 1537, 1672, 2803 |
| MhlI | GDGCHC | 4 cut(s) | 653, 960, 2490, 2850 |
| MlsI | TGGCCA | 1 cut(s) | 804 |
| MluNI | TGGCCA | 1 cut(s) | 804 |
| MmeI | TCCRAC | 4 cut(s) | 525, 2222, 2552, 3451 |
| Mox20I | TGGCCA | 1 cut(s) | 804 |
| Mph1103I | ATGCAT | 1 cut(s) | 903 |
| MroXI | GAANNNNTTC | 2 cut(s) | 678, 1032 |
| MscI | TGGCCA | 1 cut(s) | 804 |
| MslI | CAYNNNNRTG | 5 cut(s) | 896, 2514, 2681, 2904, 2992 |
| Msp20I | TGGCCA | 1 cut(s) | 804 |
| MspA1I | CMGCKG | 2 cut(s) | 2319, 2437 |
| MspCI | CTTAAG | 1 cut(s) | 2413 |
| MspI | CCGG | 2 cut(s) | 960, 1992 |
| MspR9I | CCNGG | 3 cut(s) | 960, 1992, 1993 |
| MunI | CAATTG | 3 cut(s) | 215, 930, 3067 |
| Mva1269I | GAATGC | 5 cut(s) | 573, 887, 1349, 2092, 3026 |
| MvnI | CGCG | 1 cut(s) | 939 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 78, 1821, 1920, 2443, 3272 |
| NciI | CCSGG | 3 cut(s) | 960, 1992, 1993 |
| NcoI | CCATGG | 1 cut(s) | 2311 |
| NlaIV | GGNNCC | 4 cut(s) | 208, 601, 2848, 2894 |
| NmuCI | GTSAC | 4 cut(s) | 332, 1282, 2526, 3193 |
| NruI | TCGCGA | 1 cut(s) | 939 |
| NsbI | TGCGCA | 1 cut(s) | 726 |
| NsiI | ATGCAT | 1 cut(s) | 903 |
| NspI | RCATGY | 5 cut(s) | 753, 782, 1004, 1270, 3326 |
| NspV | TTCGAA | 3 cut(s) | 153, 2251, 2775 |
| PaeI | GCATGC | 2 cut(s) | 753, 3326 |
| PaeR7I | CTCGAG | 2 cut(s) | 1631, 1766 |
| PagI | TCATGA | 3 cut(s) | 1855, 3058, 3091 |
| PciI | ACATGT | 2 cut(s) | 1000, 1266 |
| PciSI | GCTCTTC | 2 cut(s) | 486, 948 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 2248 |
| PctI | GAATGC | 5 cut(s) | 573, 887, 1349, 2092, 3026 |
| PdmI | GAANNNNTTC | 2 cut(s) | 678, 1032 |
| PkrI | GCNGC | 6 cut(s) | 829, 1961, 2318, 2522, 2648, 3328 |
| PscI | ACATGT | 2 cut(s) | 1000, 1266 |
| PsiI | TTATAA | 1 cut(s) | 759 |
| Psp124BI | GAGCTC | 1 cut(s) | 2490 |
| Psp1406I | AACGTT | 1 cut(s) | 1032 |
| PspN4I | GGNNCC | 4 cut(s) | 208, 601, 2848, 2894 |
| PspOMI | GGGCCC | 1 cut(s) | 2846 |
| PspPI | GGNCC | 3 cut(s) | 2846, 2847, 3171 |
| PsuI | RGATCY | 5 cut(s) | 240, 1402, 1537, 1672, 2803 |
| PvuII | CAGCTG | 1 cut(s) | 2437 |
| RruI | TCGCGA | 1 cut(s) | 939 |
| RseI | CAYNNNNRTG | 5 cut(s) | 896, 2514, 2681, 2904, 2992 |
| SacI | GAGCTC | 1 cut(s) | 2490 |
| SapI | GCTCTTC | 2 cut(s) | 486, 948 |
| SatI | GCNGC | 6 cut(s) | 828, 1960, 2317, 2521, 2647, 3327 |
| Sau96I | GGNCC | 3 cut(s) | 2846, 2847, 3171 |
| ScaI | AGTACT | 2 cut(s) | 2301, 2840 |
| ScrFI | CCNGG | 3 cut(s) | 960, 1992, 1993 |
| SduI | GDGCHC | 4 cut(s) | 653, 960, 2490, 2850 |
| SfaNI | GCATC | 9 cut(s) | 1503, 1638, 1773, 2205, 2626, 2753, 2984, 2996, 3262 |
| SfcI | CTRYAG | 1 cut(s) | 75 |
| Sfr274I | CTCGAG | 2 cut(s) | 1631, 1766 |
| SfuI | TTCGAA | 3 cut(s) | 153, 2251, 2775 |
| SinI | GGWCC | 1 cut(s) | 3171 |
| SlaI | CTCGAG | 2 cut(s) | 1631, 1766 |
| SmaI | CCCGGG | 1 cut(s) | 1993 |
| SmiMI | CAYNNNNRTG | 5 cut(s) | 896, 2514, 2681, 2904, 2992 |
| SmlI | CTYRAG | 8 cut(s) | 416, 1496, 1631, 1766, 1898, 2144, 2413, 3775 |
| SmoI | CTYRAG | 8 cut(s) | 416, 1496, 1631, 1766, 1898, 2144, 2413, 3775 |
| SpeI | ACTAGT | 1 cut(s) | 3769 |
| SphI | GCATGC | 2 cut(s) | 753, 3326 |
| SsiI | CCGC | 2 cut(s) | 827, 2319 |
| SspI | AATATT | 4 cut(s) | 1525, 1660, 1795, 2104 |
| SspMI | CTAG | 5 cut(s) | 356, 522, 1680, 2442, 3770 |
| SstI | GAGCTC | 1 cut(s) | 2490 |
| StyD4I | CCNGG | 3 cut(s) | 958, 1990, 1991 |
| StyI | CCWWGG | 1 cut(s) | 2311 |
| TaaI | ACNGT | 6 cut(s) | 76, 1485, 2240, 2539, 3120, 3191 |
| TaiI | ACGT | 5 cut(s) | 692, 772, 1035, 1354, 2503 |
| TatI | WGTACW | 3 cut(s) | 2299, 2838, 3027 |
| TauI | GCSGC | 1 cut(s) | 830 |
| TseFI | GTSAC | 4 cut(s) | 332, 1282, 2526, 3193 |
| TseI | GCWGC | 5 cut(s) | 1959, 2316, 2520, 2646, 3326 |
| Tsp45I | GTSAC | 4 cut(s) | 332, 1282, 2526, 3193 |
| TspGWI | ACGGA | 2 cut(s) | 219, 839 |
| TspMI | CCCGGG | 1 cut(s) | 1991 |
| Vha464I | CTTAAG | 1 cut(s) | 2413 |
| VpaK11BI | GGWCC | 1 cut(s) | 3171 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 119 |
| XbaI | TCTAGA | 1 cut(s) | 1679 |
| XceI | RCATGY | 5 cut(s) | 753, 782, 1004, 1270, 3326 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 812 |
| XhoI | CTCGAG | 2 cut(s) | 1631, 1766 |
| XmaI | CCCGGG | 1 cut(s) | 1991 |
| XmiI | GTMKAC | 1 cut(s) | 795 |
| XmnI | GAANNNNTTC | 2 cut(s) | 678, 1032 |
| XspI | CTAG | 5 cut(s) | 356, 522, 1680, 2442, 3770 |
| ZraI | GACGTC | 1 cut(s) | 770 |
| ZrmI | AGTACT | 2 cut(s) | 2301, 2840 |
| Zsp2I | ATGCAT | 1 cut(s) | 903 |