regulation of response to stimulus
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 702 |
| AbsI | CCTCGAGG | 1 cut(s) | 950 |
| AccI | GTMKAC | 2 cut(s) | 174, 706 |
| AciI | CCGC | 2 cut(s) | 165, 1452 |
| AclI | AACGTT | 1 cut(s) | 355 |
| AcsI | RAATTY | 6 cut(s) | 239, 366, 528, 820, 1033, 1246 |
| AfaI | GTAC | 2 cut(s) | 947, 1383 |
| AjnI | CCWGG | 1 cut(s) | 370 |
| AloI | GAACNNNNNNTCC | 4 cut(s) | 822, 854, 1248, 1280 |
| AluBI | AGCT | 6 cut(s) | 265, 295, 592, 652, 847, 1273 |
| AluI | AGCT | 6 cut(s) | 265, 295, 592, 652, 847, 1273 |
| Alw21I | GWGCWC | 3 cut(s) | 960, 977, 1403 |
| Alw26I | GTCTC | 5 cut(s) | 307, 434, 522, 604, 688 |
| Ama87I | CYCGRG | 2 cut(s) | 950, 1376 |
| ApeKI | GCWGC | 2 cut(s) | 420, 624 |
| ApoI | RAATTY | 6 cut(s) | 239, 366, 528, 820, 1033, 1246 |
| AseI | ATTAAT | 1 cut(s) | 857 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 747, 990, 1203 |
| AvaI | CYCGRG | 2 cut(s) | 950, 1376 |
| BanII | GRGCYC | 1 cut(s) | 1011 |
| BbsI | GAAGAC | 2 cut(s) | 312, 404 |
| Bbv12I | GWGCWC | 3 cut(s) | 960, 977, 1403 |
| BbvI | GCAGC | 2 cut(s) | 407, 611 |
| BccI | CCATC | 1 cut(s) | 614 |
| BceAI | ACGGC | 1 cut(s) | 217 |
| BciT130I | CCWGG | 1 cut(s) | 372 |
| BciVI | GTATCC | 3 cut(s) | 929, 1142, 1355 |
| BcoDI | GTCTC | 5 cut(s) | 307, 434, 522, 604, 688 |
| BfaI | CTAG | 2 cut(s) | 617, 1163 |
| BfmI | CTRYAG | 1 cut(s) | 171 |
| BfuI | GTATCC | 3 cut(s) | 929, 1142, 1355 |
| BglII | AGATCT | 3 cut(s) | 385, 786, 999 |
| BisI | GCNGC | 2 cut(s) | 421, 625 |
| BlsI | GCNGC | 2 cut(s) | 422, 626 |
| Bme1390I | CCNGG | 1 cut(s) | 372 |
| BmeT110I | CYCGRG | 2 cut(s) | 950, 1376 |
| BmiI | GGNNCC | 3 cut(s) | 795, 1221, 1436 |
| BmrFI | CCNGG | 1 cut(s) | 372 |
| BmsI | GCATC | 2 cut(s) | 88, 438 |
| BpiI | GAAGAC | 2 cut(s) | 312, 404 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 836, 868, 1262, 1294 |
| BpuEI | CTTGAG | 3 cut(s) | 416, 584, 722 |
| Bsa29I | ATCGAT | 2 cut(s) | 336, 1426 |
| BsaI | GGTCTC | 1 cut(s) | 522 |
| BsaJI | CCNNGG | 3 cut(s) | 371, 656, 1011 |
| Bse1I | ACTGG | 3 cut(s) | 209, 225, 426 |
| Bse3DI | GCAATG | 1 cut(s) | 550 |
| BseBI | CCWGG | 1 cut(s) | 372 |
| BseCI | ATCGAT | 2 cut(s) | 336, 1426 |
| BseDI | CCNNGG | 3 cut(s) | 371, 656, 1011 |
| BseMI | GCAATG | 1 cut(s) | 550 |
| BseMII | CTCAG | 2 cut(s) | 471, 639 |
| BseNI | ACTGG | 3 cut(s) | 209, 225, 426 |
| BseXI | GCAGC | 2 cut(s) | 407, 611 |
| BsgI | GTGCAG | 2 cut(s) | 406, 610 |
| BshVI | ATCGAT | 2 cut(s) | 336, 1426 |
| BsiHKAI | GWGCWC | 3 cut(s) | 960, 977, 1403 |
| BsiHKCI | CYCGRG | 2 cut(s) | 950, 1376 |
| BsiSI | CCGG | 1 cut(s) | 248 |
| BsmAI | GTCTC | 5 cut(s) | 307, 434, 522, 604, 688 |
| BsmI | GAATGC | 1 cut(s) | 126 |
| Bso31I | GGTCTC | 1 cut(s) | 522 |
| BsoBI | CYCGRG | 2 cut(s) | 950, 1376 |
| Bsp1286I | GDGCHC | 4 cut(s) | 960, 977, 1011, 1403 |
| Bsp143I | GATC | 9 cut(s) | 333, 337, 385, 786, 999, 1174, 1387, 1423, 1427 |
| Bsp19I | CCATGG | 1 cut(s) | 1011 |
| BspACI | CCGC | 2 cut(s) | 165, 1452 |
| BspCNI | CTCAG | 2 cut(s) | 472, 640 |
| BspDI | ATCGAT | 2 cut(s) | 336, 1426 |
| BspHI | TCATGA | 1 cut(s) | 520 |
| BspLI | GGNNCC | 3 cut(s) | 795, 1221, 1436 |
| BspTNI | GGTCTC | 1 cut(s) | 522 |
| BsrDI | GCAATG | 1 cut(s) | 550 |
| BsrI | ACTGG | 3 cut(s) | 209, 225, 426 |
| BssECI | CCNNGG | 3 cut(s) | 371, 656, 1011 |
| BssMI | GATC | 9 cut(s) | 333, 337, 385, 786, 999, 1174, 1387, 1423, 1427 |
| BssT1I | CCWWGG | 2 cut(s) | 656, 1011 |
| Bst2UI | CCWGG | 1 cut(s) | 372 |
| Bst6I | CTCTTC | 2 cut(s) | 195, 1186 |
| BstDEI | CTNAG | 4 cut(s) | 116, 480, 648, 1003 |
| BstDSI | CCRYGG | 1 cut(s) | 1011 |
| BstKTI | GATC | 9 cut(s) | 336, 340, 388, 789, 1002, 1177, 1390, 1426, 1430 |
| BstMAI | GTCTC | 5 cut(s) | 307, 434, 522, 604, 688 |
| BstMBI | GATC | 9 cut(s) | 333, 337, 385, 786, 999, 1174, 1387, 1423, 1427 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 130, 271 |
| BstNI | CCWGG | 1 cut(s) | 372 |
| BstSCI | CCNGG | 1 cut(s) | 370 |
| BstSFI | CTRYAG | 1 cut(s) | 171 |
| BstV1I | GCAGC | 2 cut(s) | 407, 611 |
| BstV2I | GAAGAC | 2 cut(s) | 312, 404 |
| BstX2I | RGATCY | 3 cut(s) | 385, 786, 999 |
| BstYI | RGATCY | 3 cut(s) | 385, 786, 999 |
| Bsu15I | ATCGAT | 2 cut(s) | 336, 1426 |
| BsuI | GTATCC | 3 cut(s) | 929, 1142, 1355 |
| BsuTUI | ATCGAT | 2 cut(s) | 336, 1426 |
| BtgI | CCRYGG | 1 cut(s) | 1011 |
| BtsI | GCAGTG | 1 cut(s) | 870 |
| BtsIMutI | CAGTG | 2 cut(s) | 218, 870 |
| CciI | TCATGA | 1 cut(s) | 520 |
| ClaI | ATCGAT | 2 cut(s) | 336, 1426 |
| Csp6I | GTAC | 2 cut(s) | 946, 1382 |
| CviAII | CATG | 5 cut(s) | 521, 1012, 1185, 1298, 1322 |
| CviQI | GTAC | 2 cut(s) | 946, 1382 |
| DdeI | CTNAG | 4 cut(s) | 116, 480, 648, 1003 |
| DpnI | GATC | 9 cut(s) | 335, 339, 387, 788, 1001, 1176, 1389, 1425, 1429 |
| DpnII | GATC | 9 cut(s) | 333, 337, 385, 786, 999, 1174, 1387, 1423, 1427 |
| DraI | TTTAAA | 2 cut(s) | 766, 1245 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 702 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 702 |
| Eam1104I | CTCTTC | 2 cut(s) | 195, 1186 |
| EarI | CTCTTC | 2 cut(s) | 195, 1186 |
| Eco130I | CCWWGG | 2 cut(s) | 656, 1011 |
| Eco24I | GRGCYC | 1 cut(s) | 1011 |
| Eco31I | GGTCTC | 1 cut(s) | 522 |
| Eco32I | GATATC | 1 cut(s) | 215 |
| Eco88I | CYCGRG | 2 cut(s) | 950, 1376 |
| EcoRII | CCWGG | 1 cut(s) | 370 |
| EcoRV | GATATC | 1 cut(s) | 215 |
| EcoT14I | CCWWGG | 2 cut(s) | 656, 1011 |
| EcoT38I | GRGCYC | 1 cut(s) | 1011 |
| ErhI | CCWWGG | 2 cut(s) | 656, 1011 |
| FaeI | CATG | 5 cut(s) | 524, 1015, 1188, 1301, 1325 |
| FatI | CATG | 5 cut(s) | 520, 1011, 1184, 1297, 1321 |
| FauNDI | CATATG | 1 cut(s) | 270 |
| FblI | GTMKAC | 2 cut(s) | 174, 706 |
| Fnu4HI | GCNGC | 2 cut(s) | 421, 625 |
| FriOI | GRGCYC | 1 cut(s) | 1011 |
| Fsp4HI | GCNGC | 2 cut(s) | 421, 625 |
| FspBI | CTAG | 2 cut(s) | 617, 1163 |
| GluI | GCNGC | 2 cut(s) | 421, 625 |
| HapII | CCGG | 1 cut(s) | 248 |
| Hin1II | CATG | 5 cut(s) | 524, 1015, 1188, 1301, 1325 |
| HincII | GTYRAC | 1 cut(s) | 322 |
| HindII | GTYRAC | 1 cut(s) | 322 |
| HinfI | GANTC | 4 cut(s) | 185, 224, 703, 1238 |
| HpaII | CCGG | 1 cut(s) | 248 |
| Hpy166II | GTNNAC | 4 cut(s) | 175, 322, 353, 707 |
| Hpy188I | TCNGA | 4 cut(s) | 112, 481, 649, 1405 |
| Hpy8I | GTNNAC | 4 cut(s) | 175, 322, 353, 707 |
| HpyAV | CCTTC | 1 cut(s) | 188 |
| HpyCH4IV | ACGT | 1 cut(s) | 355 |
| HpyCH4V | TGCA | 7 cut(s) | 133, 423, 555, 627, 903, 1116, 1329 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 130, 271 |
| HpyF3I | CTNAG | 4 cut(s) | 116, 480, 648, 1003 |
| HpySE526I | ACGT | 1 cut(s) | 355 |
| Hsp92II | CATG | 5 cut(s) | 524, 1015, 1188, 1301, 1325 |
| Kzo9I | GATC | 9 cut(s) | 333, 337, 385, 786, 999, 1174, 1387, 1423, 1427 |
| LmnI | GCTCC | 6 cut(s) | 793, 980, 1193, 1219, 1406, 1434 |
| Lsp1109I | GCAGC | 2 cut(s) | 407, 611 |
| LweI | GCATC | 2 cut(s) | 88, 438 |
| MaeI | CTAG | 2 cut(s) | 617, 1163 |
| MaeII | ACGT | 1 cut(s) | 355 |
| MalI | GATC | 9 cut(s) | 335, 339, 387, 788, 1001, 1176, 1389, 1425, 1429 |
| MboI | GATC | 9 cut(s) | 333, 337, 385, 786, 999, 1174, 1387, 1423, 1427 |
| MboII | GAAGA | 8 cut(s) | 182, 317, 398, 404, 431, 1028, 1173, 1456 |
| MfeI | CAATTG | 2 cut(s) | 51, 806 |
| MflI | RGATCY | 3 cut(s) | 385, 786, 999 |
| MhlI | GDGCHC | 4 cut(s) | 960, 977, 1011, 1403 |
| MlyI | GAGTC | 2 cut(s) | 712, 1247 |
| MmeI | TCCRAC | 1 cut(s) | 780 |
| MnlI | CCTC | 5 cut(s) | 410, 946, 959, 1159, 1372 |
| MroXI | GAANNNNTTC | 3 cut(s) | 747, 990, 1203 |
| MspI | CCGG | 1 cut(s) | 248 |
| MspR9I | CCNGG | 1 cut(s) | 372 |
| MunI | CAATTG | 2 cut(s) | 51, 806 |
| Mva1269I | GAATGC | 1 cut(s) | 126 |
| MvaI | CCWGG | 1 cut(s) | 372 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 130, 271 |
| NcoI | CCATGG | 1 cut(s) | 1011 |
| NdeI | CATATG | 1 cut(s) | 270 |
| NdeII | GATC | 9 cut(s) | 333, 337, 385, 786, 999, 1174, 1387, 1423, 1427 |
| NlaIII | CATG | 5 cut(s) | 524, 1015, 1188, 1301, 1325 |
| NlaIV | GGNNCC | 3 cut(s) | 795, 1221, 1436 |
| NmeAIII | GCCGAG | 1 cut(s) | 308 |
| PaeR7I | CTCGAG | 2 cut(s) | 950, 1376 |
| PagI | TCATGA | 1 cut(s) | 520 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 352, 1383 |
| PctI | GAATGC | 1 cut(s) | 126 |
| PdmI | GAANNNNTTC | 3 cut(s) | 747, 990, 1203 |
| PfeI | GAWTC | 2 cut(s) | 185, 224 |
| PkrI | GCNGC | 2 cut(s) | 422, 626 |
| PleI | GAGTC | 2 cut(s) | 711, 1246 |
| PpsI | GAGTC | 2 cut(s) | 711, 1246 |
| PshBI | ATTAAT | 1 cut(s) | 857 |
| Psp1406I | AACGTT | 1 cut(s) | 355 |
| Psp6I | CCWGG | 1 cut(s) | 370 |
| PspGI | CCWGG | 1 cut(s) | 370 |
| PspN4I | GGNNCC | 3 cut(s) | 795, 1221, 1436 |
| PspXI | VCTCGAGB | 1 cut(s) | 950 |
| PsuI | RGATCY | 3 cut(s) | 385, 786, 999 |
| RsaI | GTAC | 2 cut(s) | 947, 1383 |
| RsaNI | GTAC | 2 cut(s) | 946, 1382 |
| SatI | GCNGC | 2 cut(s) | 421, 625 |
| Sau3AI | GATC | 9 cut(s) | 333, 337, 385, 786, 999, 1174, 1387, 1423, 1427 |
| SchI | GAGTC | 2 cut(s) | 712, 1247 |
| ScrFI | CCNGG | 1 cut(s) | 372 |
| SduI | GDGCHC | 4 cut(s) | 960, 977, 1011, 1403 |
| SfaNI | GCATC | 2 cut(s) | 88, 438 |
| SfcI | CTRYAG | 1 cut(s) | 171 |
| Sfr274I | CTCGAG | 2 cut(s) | 950, 1376 |
| SlaI | CTCGAG | 2 cut(s) | 950, 1376 |
| SmlI | CTYRAG | 5 cut(s) | 431, 563, 737, 950, 1376 |
| SmoI | CTYRAG | 5 cut(s) | 431, 563, 737, 950, 1376 |
| SsiI | CCGC | 2 cut(s) | 165, 1452 |
| SspI | AATATT | 1 cut(s) | 460 |
| SspMI | CTAG | 2 cut(s) | 617, 1163 |
| StyD4I | CCNGG | 1 cut(s) | 370 |
| StyI | CCWWGG | 2 cut(s) | 656, 1011 |
| TaiI | ACGT | 1 cut(s) | 358 |
| TfiI | GAWTC | 2 cut(s) | 185, 224 |
| TscAI | CASTG | 2 cut(s) | 225, 877 |
| TseI | GCWGC | 2 cut(s) | 420, 624 |
| TspDTI | ATGAA | 4 cut(s) | 257, 815, 1173, 1241 |
| TspRI | CASTG | 2 cut(s) | 225, 877 |
| VspI | ATTAAT | 1 cut(s) | 857 |
| XapI | RAATTY | 6 cut(s) | 239, 366, 528, 820, 1033, 1246 |
| XbaI | TCTAGA | 2 cut(s) | 616, 1162 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1428 |
| XhoI | CTCGAG | 2 cut(s) | 950, 1376 |
| XmiI | GTMKAC | 2 cut(s) | 174, 706 |
| XmnI | GAANNNNTTC | 3 cut(s) | 747, 990, 1203 |
| XspI | CTAG | 2 cut(s) | 617, 1163 |