TIR domain
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 187 |
| AccB1I | GGYRCC | 1 cut(s) | 74 |
| AccI | GTMKAC | 2 cut(s) | 147, 1041 |
| AciI | CCGC | 4 cut(s) | 18, 79, 349, 1163 |
| AclWI | GGATC | 3 cut(s) | 329, 865, 917 |
| AcsI | RAATTY | 3 cut(s) | 938, 957, 1283 |
| AcuI | CTGAAG | 1 cut(s) | 1061 |
| AcyI | GRCGYC | 1 cut(s) | 433 |
| AfaI | GTAC | 2 cut(s) | 1123, 1242 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 360, 892 |
| AgsI | TTSAA | 8 cut(s) | 383, 568, 587, 608, 725, 1088, 1093, 1187 |
| AjnI | CCWGG | 2 cut(s) | 425, 970 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 924, 930, 956, 962 |
| Alw21I | GWGCWC | 1 cut(s) | 390 |
| Alw26I | GTCTC | 1 cut(s) | 871 |
| AlwI | GGATC | 3 cut(s) | 329, 865, 917 |
| AoxI | GGCC | 1 cut(s) | 351 |
| ApaI | GGGCCC | 1 cut(s) | 355 |
| ApeKI | GCWGC | 2 cut(s) | 107, 452 |
| ApoI | RAATTY | 3 cut(s) | 938, 957, 1283 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1074 |
| AspS9I | GGNCC | 4 cut(s) | 351, 352, 665, 895 |
| AsuC2I | CCSGG | 1 cut(s) | 886 |
| AsuHPI | GGTGA | 1 cut(s) | 544 |
| AsuII | TTCGAA | 1 cut(s) | 729 |
| AvaII | GGWCC | 2 cut(s) | 665, 895 |
| BaeGI | GKGCMC | 3 cut(s) | 355, 408, 1297 |
| BanI | GGYRCC | 1 cut(s) | 74 |
| BanII | GRGCYC | 1 cut(s) | 355 |
| Bbv12I | GWGCWC | 1 cut(s) | 390 |
| BbvI | GCAGC | 2 cut(s) | 94, 464 |
| BccI | CCATC | 3 cut(s) | 105, 1100, 1144 |
| BceAI | ACGGC | 1 cut(s) | 1022 |
| BciT130I | CCWGG | 2 cut(s) | 427, 972 |
| BciVI | GTATCC | 2 cut(s) | 409, 774 |
| BcnI | CCSGG | 1 cut(s) | 886 |
| BcoDI | GTCTC | 1 cut(s) | 871 |
| BfaI | CTAG | 5 cut(s) | 249, 996, 1101, 1116, 1193 |
| BfmI | CTRYAG | 2 cut(s) | 651, 852 |
| BfuAI | ACCTGC | 1 cut(s) | 187 |
| BfuI | GTATCC | 2 cut(s) | 409, 774 |
| BisI | GCNGC | 2 cut(s) | 108, 453 |
| BlsI | GCNGC | 2 cut(s) | 109, 454 |
| Bme1390I | CCNGG | 3 cut(s) | 427, 886, 972 |
| Bme18I | GGWCC | 2 cut(s) | 665, 895 |
| BmgT120I | GGNCC | 4 cut(s) | 351, 352, 665, 895 |
| BmiI | GGNNCC | 3 cut(s) | 76, 353, 666 |
| BmrFI | CCNGG | 3 cut(s) | 427, 886, 972 |
| BmrI | ACTGGG | 1 cut(s) | 495 |
| BmsI | GCATC | 1 cut(s) | 688 |
| BmuI | ACTGGG | 1 cut(s) | 495 |
| BoxI | GACNNNNGTC | 1 cut(s) | 893 |
| Bpu14I | TTCGAA | 1 cut(s) | 729 |
| BpuMI | CCSGG | 1 cut(s) | 886 |
| BsaBI | GATNNNNATC | 1 cut(s) | 333 |
| BsaHI | GRCGYC | 1 cut(s) | 433 |
| BsaJI | CCNNGG | 1 cut(s) | 970 |
| BsaWI | WCCGGW | 1 cut(s) | 117 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 360, 892 |
| Bse1I | ACTGG | 2 cut(s) | 285, 490 |
| Bse8I | GATNNNNATC | 1 cut(s) | 333 |
| BseBI | CCWGG | 2 cut(s) | 427, 972 |
| BseDI | CCNNGG | 1 cut(s) | 970 |
| BseGI | GGATG | 3 cut(s) | 10, 268, 829 |
| BseJI | GATNNNNATC | 1 cut(s) | 333 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 360, 892 |
| BseMII | CTCAG | 2 cut(s) | 243, 483 |
| BseNI | ACTGG | 2 cut(s) | 285, 490 |
| BseRI | GAGGAG | 1 cut(s) | 23 |
| BseSI | GKGCMC | 3 cut(s) | 355, 408, 1297 |
| BseXI | GCAGC | 2 cut(s) | 94, 464 |
| BshFI | GGCC | 1 cut(s) | 353 |
| BshNI | GGYRCC | 1 cut(s) | 74 |
| BsiHKAI | GWGCWC | 1 cut(s) | 390 |
| BsiSI | CCGG | 2 cut(s) | 118, 886 |
| BslFI | GGGAC | 2 cut(s) | 502, 585 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 360, 892 |
| BsmAI | GTCTC | 1 cut(s) | 871 |
| BsmFI | GGGAC | 2 cut(s) | 502, 585 |
| BsmI | GAATGC | 3 cut(s) | 290, 594, 1099 |
| BsnI | GGCC | 1 cut(s) | 353 |
| Bsp119I | TTCGAA | 1 cut(s) | 729 |
| Bsp120I | GGGCCC | 1 cut(s) | 351 |
| Bsp1286I | GDGCHC | 4 cut(s) | 355, 390, 408, 1297 |
| Bsp143I | GATC | 7 cut(s) | 28, 265, 334, 848, 857, 922, 1156 |
| BspACI | CCGC | 4 cut(s) | 18, 79, 349, 1163 |
| BspANI | GGCC | 1 cut(s) | 353 |
| BspCNI | CTCAG | 2 cut(s) | 242, 484 |
| BspLI | GGNNCC | 3 cut(s) | 76, 353, 666 |
| BspMI | ACCTGC | 1 cut(s) | 187 |
| BspPI | GGATC | 3 cut(s) | 329, 865, 917 |
| BspQI | GCTCTTC | 5 cut(s) | 378, 1016, 1080, 1117, 1188 |
| BspT104I | TTCGAA | 1 cut(s) | 729 |
| BspT107I | GGYRCC | 1 cut(s) | 74 |
| BsrI | ACTGG | 2 cut(s) | 285, 490 |
| BssECI | CCNNGG | 1 cut(s) | 970 |
| BssMI | GATC | 7 cut(s) | 28, 265, 334, 848, 857, 922, 1156 |
| BssNAI | GTATAC | 1 cut(s) | 1042 |
| BssNI | GRCGYC | 1 cut(s) | 433 |
| Bst1107I | GTATAC | 1 cut(s) | 1042 |
| Bst2UI | CCWGG | 2 cut(s) | 427, 972 |
| Bst4CI | ACNGT | 2 cut(s) | 421, 1214 |
| Bst6I | CTCTTC | 5 cut(s) | 378, 1016, 1080, 1117, 1188 |
| BstACI | GRCGYC | 1 cut(s) | 433 |
| BstBI | TTCGAA | 1 cut(s) | 729 |
| BstC8I | GCNNGC | 2 cut(s) | 351, 555 |
| BstDEI | CTNAG | 5 cut(s) | 173, 229, 492, 833, 1289 |
| BstF5I | GGATG | 3 cut(s) | 10, 268, 829 |
| BstKTI | GATC | 7 cut(s) | 31, 268, 337, 851, 860, 925, 1159 |
| BstMAI | GTCTC | 1 cut(s) | 871 |
| BstMBI | GATC | 7 cut(s) | 28, 265, 334, 848, 857, 922, 1156 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 208, 452, 799 |
| BstNI | CCWGG | 2 cut(s) | 427, 972 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 893 |
| BstSCI | CCNGG | 3 cut(s) | 425, 884, 970 |
| BstSFI | CTRYAG | 2 cut(s) | 651, 852 |
| BstSLI | GKGCMC | 3 cut(s) | 355, 408, 1297 |
| BstV1I | GCAGC | 2 cut(s) | 94, 464 |
| BstX2I | RGATCY | 1 cut(s) | 334 |
| BstYI | RGATCY | 1 cut(s) | 334 |
| BstZ17I | GTATAC | 1 cut(s) | 1042 |
| BsuI | GTATCC | 2 cut(s) | 409, 774 |
| BsuRI | GGCC | 1 cut(s) | 353 |
| BtsCI | GGATG | 3 cut(s) | 10, 268, 829 |
| BtsIMutI | CAGTG | 1 cut(s) | 1210 |
| BveI | ACCTGC | 1 cut(s) | 187 |
| Cac8I | GCNNGC | 2 cut(s) | 351, 555 |
| Cfr13I | GGNCC | 4 cut(s) | 351, 352, 665, 895 |
| CseI | GACGC | 1 cut(s) | 422 |
| Csp6I | GTAC | 2 cut(s) | 1122, 1241 |
| CviAII | CATG | 4 cut(s) | 412, 776, 1160, 1250 |
| CviQI | GTAC | 2 cut(s) | 1122, 1241 |
| DdeI | CTNAG | 5 cut(s) | 173, 229, 492, 833, 1289 |
| DpnI | GATC | 7 cut(s) | 30, 267, 336, 850, 859, 924, 1158 |
| DpnII | GATC | 7 cut(s) | 28, 265, 334, 848, 857, 922, 1156 |
| Eam1104I | CTCTTC | 5 cut(s) | 378, 1016, 1080, 1117, 1188 |
| EarI | CTCTTC | 5 cut(s) | 378, 1016, 1080, 1117, 1188 |
| Eco24I | GRGCYC | 1 cut(s) | 355 |
| Eco47I | GGWCC | 2 cut(s) | 665, 895 |
| Eco57I | CTGAAG | 1 cut(s) | 1061 |
| EcoO109I | RGGNCCY | 1 cut(s) | 895 |
| EcoRII | CCWGG | 2 cut(s) | 425, 970 |
| EcoT38I | GRGCYC | 1 cut(s) | 355 |
| FaeI | CATG | 4 cut(s) | 415, 779, 1163, 1253 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1227, 1259 |
| FaqI | GGGAC | 2 cut(s) | 502, 585 |
| FatI | CATG | 4 cut(s) | 411, 775, 1159, 1249 |
| FauI | CCCGC | 2 cut(s) | 86, 342 |
| FblI | GTMKAC | 2 cut(s) | 147, 1041 |
| Fnu4HI | GCNGC | 2 cut(s) | 108, 453 |
| FokI | GGATG | 3 cut(s) | 17, 275, 836 |
| FriOI | GRGCYC | 1 cut(s) | 355 |
| Fsp4HI | GCNGC | 2 cut(s) | 108, 453 |
| FspBI | CTAG | 5 cut(s) | 249, 996, 1101, 1116, 1193 |
| GluI | GCNGC | 2 cut(s) | 108, 453 |
| HaeIII | GGCC | 1 cut(s) | 353 |
| HapII | CCGG | 2 cut(s) | 118, 886 |
| HgaI | GACGC | 1 cut(s) | 422 |
| Hin1I | GRCGYC | 1 cut(s) | 433 |
| Hin1II | CATG | 4 cut(s) | 415, 779, 1163, 1253 |
| HincII | GTYRAC | 1 cut(s) | 148 |
| HindII | GTYRAC | 1 cut(s) | 148 |
| HindIII | AAGCTT | 4 cut(s) | 209, 438, 732, 1135 |
| HinfI | GANTC | 4 cut(s) | 548, 608, 879, 981 |
| HpaII | CCGG | 2 cut(s) | 118, 886 |
| HphI | GGTGA | 1 cut(s) | 544 |
| Hpy166II | GTNNAC | 3 cut(s) | 90, 148, 1042 |
| Hpy188I | TCNGA | 2 cut(s) | 232, 343 |
| Hpy188III | TCNNGA | 6 cut(s) | 158, 809, 908, 1015, 1116, 1143 |
| Hpy8I | GTNNAC | 3 cut(s) | 90, 148, 1042 |
| Hpy99I | CGWCG | 1 cut(s) | 152 |
| HpyAV | CCTTC | 3 cut(s) | 155, 562, 1160 |
| HpyCH4III | ACNGT | 2 cut(s) | 421, 1214 |
| HpyCH4IV | ACGT | 2 cut(s) | 397, 544 |
| HpyCH4V | TGCA | 6 cut(s) | 69, 274, 288, 749, 1027, 1268 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 208, 452, 799 |
| HpyF3I | CTNAG | 5 cut(s) | 173, 229, 492, 833, 1289 |
| HpySE526I | ACGT | 2 cut(s) | 397, 544 |
| Hsp92I | GRCGYC | 1 cut(s) | 433 |
| Hsp92II | CATG | 4 cut(s) | 415, 779, 1163, 1253 |
| Kzo9I | GATC | 7 cut(s) | 28, 265, 334, 848, 857, 922, 1156 |
| LguI | GCTCTTC | 5 cut(s) | 378, 1016, 1080, 1117, 1188 |
| Lsp1109I | GCAGC | 2 cut(s) | 94, 464 |
| LweI | GCATC | 1 cut(s) | 688 |
| MaeI | CTAG | 5 cut(s) | 249, 996, 1101, 1116, 1193 |
| MaeII | ACGT | 2 cut(s) | 397, 544 |
| MaeIII | GTNAC | 2 cut(s) | 545, 1214 |
| MalI | GATC | 7 cut(s) | 30, 267, 336, 850, 859, 924, 1158 |
| MboI | GATC | 7 cut(s) | 28, 265, 334, 848, 857, 922, 1156 |
| MfeI | CAATTG | 1 cut(s) | 1088 |
| MflI | RGATCY | 1 cut(s) | 334 |
| MhlI | GDGCHC | 4 cut(s) | 355, 390, 408, 1297 |
| MlyI | GAGTC | 2 cut(s) | 542, 873 |
| MnlI | CCTC | 7 cut(s) | 44, 65, 226, 487, 665, 908, 1039 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1074 |
| MseI | TTAA | 3 cut(s) | 818, 870, 1303 |
| MslI | CAYNNNNRTG | 2 cut(s) | 102, 1254 |
| MspA1I | CMGCKG | 3 cut(s) | 20, 81, 557 |
| MspI | CCGG | 2 cut(s) | 118, 886 |
| MspR9I | CCNGG | 3 cut(s) | 427, 886, 972 |
| MunI | CAATTG | 1 cut(s) | 1088 |
| Mva1269I | GAATGC | 3 cut(s) | 290, 594, 1099 |
| MvaI | CCWGG | 2 cut(s) | 427, 972 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 208, 452, 799 |
| NciI | CCSGG | 1 cut(s) | 886 |
| NdeII | GATC | 7 cut(s) | 28, 265, 334, 848, 857, 922, 1156 |
| NlaIII | CATG | 4 cut(s) | 415, 779, 1163, 1253 |
| NlaIV | GGNNCC | 3 cut(s) | 76, 353, 666 |
| NmuCI | GTSAC | 2 cut(s) | 545, 1214 |
| NspV | TTCGAA | 1 cut(s) | 729 |
| PciSI | GCTCTTC | 5 cut(s) | 378, 1016, 1080, 1117, 1188 |
| PctI | GAATGC | 3 cut(s) | 290, 594, 1099 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1074 |
| PfeI | GAWTC | 2 cut(s) | 608, 981 |
| PfoI | TCCNGGA | 1 cut(s) | 884 |
| PkrI | GCNGC | 2 cut(s) | 109, 454 |
| PleI | GAGTC | 2 cut(s) | 542, 873 |
| PpsI | GAGTC | 2 cut(s) | 542, 873 |
| PpuMI | RGGWCCY | 1 cut(s) | 895 |
| PshAI | GACNNNNGTC | 1 cut(s) | 893 |
| Psp5II | RGGWCCY | 1 cut(s) | 895 |
| Psp6I | CCWGG | 2 cut(s) | 425, 970 |
| PspGI | CCWGG | 2 cut(s) | 425, 970 |
| PspN4I | GGNNCC | 3 cut(s) | 76, 353, 666 |
| PspOMI | GGGCCC | 1 cut(s) | 351 |
| PspPI | GGNCC | 4 cut(s) | 351, 352, 665, 895 |
| PspPPI | RGGWCCY | 1 cut(s) | 895 |
| PsuI | RGATCY | 1 cut(s) | 334 |
| PvuII | CAGCTG | 1 cut(s) | 557 |
| RsaI | GTAC | 2 cut(s) | 1123, 1242 |
| RsaNI | GTAC | 2 cut(s) | 1122, 1241 |
| RseI | CAYNNNNRTG | 2 cut(s) | 102, 1254 |
| SalI | GTCGAC | 1 cut(s) | 146 |
| SapI | GCTCTTC | 5 cut(s) | 378, 1016, 1080, 1117, 1188 |
| SaqAI | TTAA | 3 cut(s) | 818, 870, 1303 |
| SatI | GCNGC | 2 cut(s) | 108, 453 |
| Sau3AI | GATC | 7 cut(s) | 28, 265, 334, 848, 857, 922, 1156 |
| Sau96I | GGNCC | 4 cut(s) | 351, 352, 665, 895 |
| SchI | GAGTC | 2 cut(s) | 542, 873 |
| ScrFI | CCNGG | 3 cut(s) | 427, 886, 972 |
| SduI | GDGCHC | 4 cut(s) | 355, 390, 408, 1297 |
| SfaNI | GCATC | 1 cut(s) | 688 |
| SfcI | CTRYAG | 2 cut(s) | 651, 852 |
| SfuI | TTCGAA | 1 cut(s) | 729 |
| SinI | GGWCC | 2 cut(s) | 665, 895 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 102, 1254 |
| SsiI | CCGC | 4 cut(s) | 18, 79, 349, 1163 |
| SspMI | CTAG | 5 cut(s) | 249, 996, 1101, 1116, 1193 |
| StyD4I | CCNGG | 3 cut(s) | 425, 884, 970 |
| TaaI | ACNGT | 2 cut(s) | 421, 1214 |
| TaiI | ACGT | 2 cut(s) | 400, 547 |
| TaqI | TCGA | 8 cut(s) | 147, 198, 206, 519, 729, 847, 1014, 1142 |
| TatI | WGTACW | 2 cut(s) | 1121, 1240 |
| TfiI | GAWTC | 2 cut(s) | 608, 981 |
| Tru1I | TTAA | 3 cut(s) | 818, 870, 1303 |
| Tru9I | TTAA | 3 cut(s) | 818, 870, 1303 |
| TscAI | CASTG | 1 cut(s) | 1217 |
| TseFI | GTSAC | 2 cut(s) | 545, 1214 |
| TseI | GCWGC | 2 cut(s) | 107, 452 |
| Tsp45I | GTSAC | 2 cut(s) | 545, 1214 |
| TspDTI | ATGAA | 8 cut(s) | 461, 465, 776, 840, 969, 1191, 1195, 1272 |
| TspGWI | ACGGA | 1 cut(s) | 327 |
| TspRI | CASTG | 1 cut(s) | 1217 |
| VpaK11BI | GGWCC | 2 cut(s) | 665, 895 |
| XapI | RAATTY | 3 cut(s) | 938, 957, 1283 |
| XbaI | TCTAGA | 1 cut(s) | 1115 |
| XmiI | GTMKAC | 2 cut(s) | 147, 1041 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1074 |
| XspI | CTAG | 5 cut(s) | 249, 996, 1101, 1116, 1193 |