Disease resistance protein (TIR-NBS-LRR class)
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| TIR | PF01582 | 12 - 193 | 6.4e-53 | TIR domain |
| TIR_2 | PF13676 | 15 - 111 | 3.7e-15 | TIR domain |
| AAA_16 | PF13191 | 192 - 310 | 1.8e-06 | AAA ATPase domain |
| NB-ARC | PF00931 | 197 - 362 | 7.4e-15 | NB-ARC domain |
| WHD_ROQ1 | PF23282 | 444 - 514 | 1.2e-18 | Disease resistance protein Roq1-like, winged-helix domain |
| LRR_14 | PF23598 | 769 - 882 | 2.6e-08 | Leucine-rich repeat region |
| LRR_13 | PF23286 | 874 - 1070 | 1.4e-11 | Disease resistance protein RPS4B-like, leucine-rich repeats |
| LRR_8 | PF13855 | 972 - 1027 | 6.1e-06 | Leucine rich repeat |
| C-JID | PF20160 | 1109 - 1244 | 4.5e-12 | C-JID domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 1001, 1932 |
| AatII | GACGTC | 1 cut(s) | 45 |
| AbsI | CCTCGAGG | 1 cut(s) | 3572 |
| Acc65I | GGTACC | 2 cut(s) | 345, 2740 |
| AccB1I | GGYRCC | 2 cut(s) | 345, 2740 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 3305 |
| AccII | CGCG | 4 cut(s) | 73, 1536, 1664, 1755 |
| AciI | CCGC | 5 cut(s) | 607, 1534, 1662, 1755, 2573 |
| AclI | AACGTT | 2 cut(s) | 1390, 2838 |
| AclWI | GGATC | 6 cut(s) | 323, 1763, 3290, 3379, 3606, 3747 |
| AcuI | CTGAAG | 4 cut(s) | 1094, 2442, 2651, 3170 |
| AcvI | CACGTG | 1 cut(s) | 1418 |
| AcyI | GRCGYC | 1 cut(s) | 42 |
| AdeI | CACNNNGTG | 2 cut(s) | 246, 1303 |
| AfaI | GTAC | 8 cut(s) | 347, 559, 901, 1326, 1577, 2571, 2742, 3608 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 1378, 1884, 3305, 3601, 3736 |
| AflII | CTTAAG | 2 cut(s) | 1985, 2137 |
| AflIII | ACRYGT | 1 cut(s) | 337 |
| AhlI | ACTAGT | 1 cut(s) | 3791 |
| AjnI | CCWGG | 4 cut(s) | 411, 1555, 3557, 3735 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 2748, 2780 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 954, 986 |
| Alw21I | GWGCWC | 1 cut(s) | 2354 |
| Alw26I | GTCTC | 8 cut(s) | 119, 787, 1467, 2040, 2146, 2451, 2631, 3822 |
| AlwI | GGATC | 6 cut(s) | 323, 1763, 3290, 3379, 3606, 3747 |
| Ama87I | CYCGRG | 4 cut(s) | 1008, 1581, 1950, 3572 |
| AoxI | GGCC | 6 cut(s) | 768, 2167, 2510, 2965, 3568, 3733 |
| ApeKI | GCWGC | 9 cut(s) | 63, 431, 446, 1181, 2000, 2417, 2865, 3138, 3173 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 765, 797 |
| AseI | ATTAAT | 1 cut(s) | 165 |
| Asp700I | GAANNNNTTC | 4 cut(s) | 633, 1107, 1350, 1390 |
| Asp718I | GGTACC | 2 cut(s) | 345, 2740 |
| AspA2I | CCTAGG | 1 cut(s) | 2513 |
| AspLEI | GCGC | 3 cut(s) | 75, 2136, 3087 |
| AspS9I | GGNCC | 3 cut(s) | 409, 940, 3642 |
| AsuC2I | CCSGG | 1 cut(s) | 3330 |
| AsuHPI | GGTGA | 3 cut(s) | 3584, 3709, 3839 |
| AsuII | TTCGAA | 4 cut(s) | 178, 637, 726, 1124 |
| AsuNHI | GCTAGC | 1 cut(s) | 731 |
| AvaI | CYCGRG | 4 cut(s) | 1008, 1581, 1950, 3572 |
| AvaII | GGWCC | 3 cut(s) | 409, 940, 3642 |
| AvrII | CCTAGG | 1 cut(s) | 2513 |
| BaeGI | GKGCMC | 1 cut(s) | 2912 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 2732, 2765 |
| BanI | GGYRCC | 2 cut(s) | 345, 2740 |
| BanII | GRGCYC | 1 cut(s) | 3057 |
| BbrPI | CACGTG | 1 cut(s) | 1418 |
| BbsI | GAAGAC | 2 cut(s) | 3107, 3158 |
| Bbv12I | GWGCWC | 1 cut(s) | 2354 |
| BbvI | GCAGC | 9 cut(s) | 75, 443, 458, 1168, 2012, 2429, 2852, 3125, 3160 |
| BceAI | ACGGC | 3 cut(s) | 2466, 3281, 3477 |
| BciT130I | CCWGG | 4 cut(s) | 413, 1557, 3559, 3737 |
| BclI | TGATCA | 3 cut(s) | 1831, 1870, 1909 |
| BcnI | CCSGG | 1 cut(s) | 3330 |
| BcoDI | GTCTC | 8 cut(s) | 119, 787, 1467, 2040, 2146, 2451, 2631, 3822 |
| BcuI | ACTAGT | 1 cut(s) | 3791 |
| BfmI | CTRYAG | 5 cut(s) | 648, 867, 1149, 2278, 2415 |
| BfoI | RGCGCY | 1 cut(s) | 3088 |
| BfrI | CTTAAG | 2 cut(s) | 1985, 2137 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 1781 |
| BglII | AGATCT | 3 cut(s) | 1291, 2233, 3775 |
| BisI | GCNGC | 9 cut(s) | 64, 432, 447, 1182, 2001, 2418, 2866, 3139, 3174 |
| BlnI | CCTAGG | 1 cut(s) | 2513 |
| BlsI | GCNGC | 9 cut(s) | 65, 433, 448, 1183, 2002, 2419, 2867, 3140, 3175 |
| BmcAI | AGTACT | 1 cut(s) | 559 |
| Bme1390I | CCNGG | 5 cut(s) | 413, 1557, 3330, 3559, 3737 |
| Bme18I | GGWCC | 3 cut(s) | 409, 940, 3642 |
| BmeT110I | CYCGRG | 4 cut(s) | 1008, 1581, 1950, 3572 |
| BmgT120I | GGNCC | 3 cut(s) | 409, 940, 3642 |
| BmiI | GGNNCC | 8 cut(s) | 347, 893, 1054, 1546, 1805, 2600, 2742, 3010 |
| BmrFI | CCNGG | 5 cut(s) | 413, 1557, 3330, 3559, 3737 |
| BmtI | GCTAGC | 1 cut(s) | 735 |
| BpiI | GAAGAC | 2 cut(s) | 3107, 3158 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 2837, 2869 |
| BpmI | CTGGAG | 4 cut(s) | 878, 1578, 2051, 2132 |
| Bpu14I | TTCGAA | 4 cut(s) | 178, 637, 726, 1124 |
| BpuEI | CTTGAG | 6 cut(s) | 167, 538, 2723, 2825, 2864, 3041 |
| BpuMI | CCSGG | 1 cut(s) | 3330 |
| Bsa29I | ATCGAT | 2 cut(s) | 1455, 1639 |
| BsaAI | YACGTR | 1 cut(s) | 1418 |
| BsaBI | GATNNNNATC | 2 cut(s) | 3192, 3774 |
| BsaHI | GRCGYC | 1 cut(s) | 42 |
| BsaI | GGTCTC | 1 cut(s) | 2451 |
| BsaJI | CCNNGG | 5 cut(s) | 1949, 2078, 2211, 2513, 3730 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 954, 984 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 1378, 1884, 3305, 3601, 3736 |
| Bse118I | RCCGGY | 1 cut(s) | 1184 |
| Bse1I | ACTGG | 3 cut(s) | 276, 1254, 1732 |
| Bse3DI | GCAATG | 1 cut(s) | 2984 |
| Bse8I | GATNNNNATC | 2 cut(s) | 3192, 3774 |
| BseBI | CCWGG | 4 cut(s) | 413, 1557, 3559, 3737 |
| BseCI | ATCGAT | 2 cut(s) | 1455, 1639 |
| BseDI | CCNNGG | 5 cut(s) | 1949, 2078, 2211, 2513, 3730 |
| BseJI | GATNNNNATC | 2 cut(s) | 3192, 3774 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 1378, 1884, 3305, 3601, 3736 |
| BseMI | GCAATG | 1 cut(s) | 2984 |
| BseMII | CTCAG | 5 cut(s) | 2868, 2944, 3283, 3833, 3864 |
| BseNI | ACTGG | 3 cut(s) | 276, 1254, 1732 |
| BseRI | GAGGAG | 3 cut(s) | 777, 1938, 2228 |
| BseSI | GKGCMC | 1 cut(s) | 2912 |
| BseXI | GCAGC | 9 cut(s) | 75, 443, 458, 1168, 2012, 2429, 2852, 3125, 3160 |
| BseYI | CCCAGC | 1 cut(s) | 2602 |
| Bsh1236I | CGCG | 4 cut(s) | 73, 1536, 1664, 1755 |
| BshFI | GGCC | 6 cut(s) | 770, 2169, 2512, 2967, 3570, 3735 |
| BshNI | GGYRCC | 2 cut(s) | 345, 2740 |
| BshVI | ATCGAT | 2 cut(s) | 1455, 1639 |
| BsiHKAI | GWGCWC | 1 cut(s) | 2354 |
| BsiHKCI | CYCGRG | 4 cut(s) | 1008, 1581, 1950, 3572 |
| BsiSI | CCGG | 3 cut(s) | 960, 1185, 3329 |
| BslFI | GGGAC | 2 cut(s) | 2798, 2942 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 1378, 1884, 3305, 3601, 3736 |
| BsmAI | GTCTC | 8 cut(s) | 119, 787, 1467, 2040, 2146, 2451, 2631, 3822 |
| BsmFI | GGGAC | 2 cut(s) | 2798, 2942 |
| BsmI | GAATGC | 9 cut(s) | 281, 591, 1132, 1188, 1213, 1632, 1971, 3202, 3494 |
| BsnI | GGCC | 6 cut(s) | 770, 2169, 2512, 2967, 3570, 3735 |
| Bso31I | GGTCTC | 1 cut(s) | 2451 |
| BsoBI | CYCGRG | 4 cut(s) | 1008, 1581, 1950, 3572 |
| Bsp119I | TTCGAA | 4 cut(s) | 178, 637, 726, 1124 |
| Bsp1286I | GDGCHC | 3 cut(s) | 2354, 2912, 3057 |
| Bsp1407I | TGTACA | 2 cut(s) | 1575, 3606 |
| BspACI | CCGC | 5 cut(s) | 607, 1534, 1662, 1755, 2573 |
| BspANI | GGCC | 6 cut(s) | 770, 2169, 2512, 2967, 3570, 3735 |
| BspCNI | CTCAG | 5 cut(s) | 2867, 2943, 3282, 3832, 3865 |
| BspDI | ATCGAT | 2 cut(s) | 1455, 1639 |
| BspFNI | CGCG | 4 cut(s) | 73, 1536, 1664, 1755 |
| BspHI | TCATGA | 1 cut(s) | 3742 |
| BspLI | GGNNCC | 8 cut(s) | 347, 893, 1054, 1546, 1805, 2600, 2742, 3010 |
| BspMAI | CTGCAG | 1 cut(s) | 2419 |
| BspOI | GCTAGC | 1 cut(s) | 735 |
| BspPI | GGATC | 6 cut(s) | 323, 1763, 3290, 3379, 3606, 3747 |
| BspQI | GCTCTTC | 1 cut(s) | 1121 |
| BspT104I | TTCGAA | 4 cut(s) | 178, 637, 726, 1124 |
| BspT107I | GGYRCC | 2 cut(s) | 345, 2740 |
| BspTI | CTTAAG | 2 cut(s) | 1985, 2137 |
| BspTNI | GGTCTC | 1 cut(s) | 2451 |
| BsrDI | GCAATG | 1 cut(s) | 2984 |
| BsrFI | RCCGGY | 1 cut(s) | 1184 |
| BsrGI | TGTACA | 2 cut(s) | 1575, 3606 |
| BsrI | ACTGG | 3 cut(s) | 276, 1254, 1732 |
| BssAI | RCCGGY | 1 cut(s) | 1184 |
| BssECI | CCNNGG | 5 cut(s) | 1949, 2078, 2211, 2513, 3730 |
| BssNI | GRCGYC | 1 cut(s) | 42 |
| BssT1I | CCWWGG | 3 cut(s) | 2078, 2513, 3730 |
| Bst2UI | CCWGG | 4 cut(s) | 413, 1557, 3559, 3737 |
| Bst4CI | ACNGT | 5 cut(s) | 484, 1489, 1618, 1928, 3157 |
| Bst6I | CTCTTC | 7 cut(s) | 16, 180, 721, 1113, 1121, 1726, 2043 |
| BstACI | GRCGYC | 1 cut(s) | 42 |
| BstAFI | CTTAAG | 2 cut(s) | 1985, 2137 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 604, 1412 |
| BstAUI | TGTACA | 2 cut(s) | 1575, 3606 |
| BstBAI | YACGTR | 1 cut(s) | 1418 |
| BstBI | TTCGAA | 4 cut(s) | 178, 637, 726, 1124 |
| BstC8I | GCNNGC | 6 cut(s) | 304, 733, 1186, 2488, 2608, 3083 |
| BstFNI | CGCG | 4 cut(s) | 73, 1536, 1664, 1755 |
| BstH2I | RGCGCY | 1 cut(s) | 3088 |
| BstHHI | GCGC | 3 cut(s) | 75, 2136, 3087 |
| BstMAI | GTCTC | 8 cut(s) | 119, 787, 1467, 2040, 2146, 2451, 2631, 3822 |
| BstNI | CCWGG | 4 cut(s) | 413, 1557, 3559, 3737 |
| BstNSI | RCATGY | 2 cut(s) | 341, 3047 |
| BstSCI | CCNGG | 5 cut(s) | 411, 1555, 3328, 3557, 3735 |
| BstSFI | CTRYAG | 5 cut(s) | 648, 867, 1149, 2278, 2415 |
| BstSLI | GKGCMC | 1 cut(s) | 2912 |
| BstUI | CGCG | 4 cut(s) | 73, 1536, 1664, 1755 |
| BstV1I | GCAGC | 9 cut(s) | 75, 443, 458, 1168, 2012, 2429, 2852, 3125, 3160 |
| BstV2I | GAAGAC | 2 cut(s) | 3107, 3158 |
| BstX2I | RGATCY | 6 cut(s) | 328, 1291, 2233, 3371, 3611, 3775 |
| BstYI | RGATCY | 6 cut(s) | 328, 1291, 2233, 3371, 3611, 3775 |
| Bsu15I | ATCGAT | 2 cut(s) | 1455, 1639 |
| BsuRI | GGCC | 6 cut(s) | 770, 2169, 2512, 2967, 3570, 3735 |
| BsuTUI | ATCGAT | 2 cut(s) | 1455, 1639 |
| BtsIMutI | CAGTG | 4 cut(s) | 480, 2904, 2938, 3146 |
| Cac8I | GCNNGC | 6 cut(s) | 304, 733, 1186, 2488, 2608, 3083 |
| CciI | TCATGA | 1 cut(s) | 3742 |
| CfoI | GCGC | 3 cut(s) | 75, 2136, 3087 |
| Cfr10I | RCCGGY | 1 cut(s) | 1184 |
| Cfr13I | GGNCC | 3 cut(s) | 409, 940, 3642 |
| ClaI | ATCGAT | 2 cut(s) | 1455, 1639 |
| CseI | GACGC | 1 cut(s) | 3036 |
| CsiI | ACCWGGT | 1 cut(s) | 411 |
| Csp6I | GTAC | 8 cut(s) | 346, 558, 900, 1325, 1576, 2570, 2741, 3607 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 3108, 3143 |
| CviQI | GTAC | 8 cut(s) | 346, 558, 900, 1325, 1576, 2570, 2741, 3607 |
| DraI | TTTAAA | 4 cut(s) | 108, 2272, 2406, 2835 |
| DraIII | CACNNNGTG | 2 cut(s) | 246, 1303 |
| Eam1104I | CTCTTC | 7 cut(s) | 16, 180, 721, 1113, 1121, 1726, 2043 |
| EarI | CTCTTC | 7 cut(s) | 16, 180, 721, 1113, 1121, 1726, 2043 |
| Eco130I | CCWWGG | 3 cut(s) | 2078, 2513, 3730 |
| Eco147I | AGGCCT | 1 cut(s) | 2512 |
| Eco24I | GRGCYC | 1 cut(s) | 3057 |
| Eco31I | GGTCTC | 1 cut(s) | 2451 |
| Eco32I | GATATC | 2 cut(s) | 2057, 2787 |
| Eco47I | GGWCC | 3 cut(s) | 409, 940, 3642 |
| Eco57I | CTGAAG | 4 cut(s) | 1094, 2442, 2651, 3170 |
| Eco72I | CACGTG | 1 cut(s) | 1418 |
| Eco88I | CYCGRG | 4 cut(s) | 1008, 1581, 1950, 3572 |
| EcoRI | GAATTC | 1 cut(s) | 639 |
| EcoRII | CCWGG | 4 cut(s) | 411, 1555, 3557, 3735 |
| EcoRV | GATATC | 2 cut(s) | 2057, 2787 |
| EcoT14I | CCWWGG | 3 cut(s) | 2078, 2513, 3730 |
| EcoT22I | ATGCAT | 4 cut(s) | 1500, 1634, 1971, 2074 |
| EcoT38I | GRGCYC | 1 cut(s) | 3057 |
| ErhI | CCWWGG | 3 cut(s) | 2078, 2513, 3730 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 1338, 1370, 3546, 3578, 3823, 3855 |
| FaqI | GGGAC | 2 cut(s) | 2798, 2942 |
| FauI | CCCGC | 2 cut(s) | 600, 1669 |
| FbaI | TGATCA | 3 cut(s) | 1831, 1870, 1909 |
| Fnu4HI | GCNGC | 9 cut(s) | 64, 432, 447, 1182, 2001, 2418, 2866, 3139, 3174 |
| FriOI | GRGCYC | 1 cut(s) | 3057 |
| Fsp4HI | GCNGC | 9 cut(s) | 64, 432, 447, 1182, 2001, 2418, 2866, 3139, 3174 |
| GlaI | GCGC | 3 cut(s) | 74, 2135, 3086 |
| GluI | GCNGC | 9 cut(s) | 64, 432, 447, 1182, 2001, 2418, 2866, 3139, 3174 |
| GsaI | CCCAGC | 1 cut(s) | 2606 |
| GsuI | CTGGAG | 4 cut(s) | 878, 1578, 2051, 2132 |
| HaeII | RGCGCY | 1 cut(s) | 3088 |
| HaeIII | GGCC | 6 cut(s) | 770, 2169, 2512, 2967, 3570, 3735 |
| HapII | CCGG | 3 cut(s) | 960, 1185, 3329 |
| HgaI | GACGC | 1 cut(s) | 3036 |
| HhaI | GCGC | 3 cut(s) | 75, 2136, 3087 |
| Hin1I | GRCGYC | 1 cut(s) | 42 |
| Hin6I | GCGC | 3 cut(s) | 73, 2134, 3085 |
| HinP1I | GCGC | 3 cut(s) | 73, 2134, 3085 |
| HincII | GTYRAC | 4 cut(s) | 1827, 1866, 1905, 1944 |
| HindII | GTYRAC | 4 cut(s) | 1827, 1866, 1905, 1944 |
| HindIII | AAGCTT | 2 cut(s) | 2324, 3389 |
| HpaII | CCGG | 3 cut(s) | 960, 1185, 3329 |
| HphI | GGTGA | 3 cut(s) | 3584, 3709, 3839 |
| Hpy166II | GTNNAC | 9 cut(s) | 1578, 1827, 1866, 1905, 1944, 2717, 3607, 3645, 3896 |
| Hpy8I | GTNNAC | 9 cut(s) | 1578, 1827, 1866, 1905, 1944, 2717, 3607, 3645, 3896 |
| HpyAV | CCTTC | 9 cut(s) | 391, 1158, 1888, 1927, 2310, 2378, 2442, 2502, 3098 |
| HpyCH4III | ACNGT | 5 cut(s) | 484, 1489, 1618, 1928, 3157 |
| HpyCH4IV | ACGT | 6 cut(s) | 42, 1390, 1417, 1935, 2838, 3069 |
| HpySE526I | ACGT | 6 cut(s) | 42, 1390, 1417, 1935, 2838, 3069 |
| Hsp92I | GRCGYC | 1 cut(s) | 42 |
| HspAI | GCGC | 3 cut(s) | 73, 2134, 3085 |
| KpnI | GGTACC | 2 cut(s) | 349, 2744 |
| KroI | GCCGGC | 1 cut(s) | 1184 |
| KroNI | GCCGGC | 1 cut(s) | 1186 |
| Ksp22I | TGATCA | 3 cut(s) | 1831, 1870, 1909 |
| LguI | GCTCTTC | 1 cut(s) | 1121 |
| LmnI | GCTCC | 8 cut(s) | 897, 1052, 1135, 1803, 2215, 2604, 3111, 3803 |
| Lsp1109I | GCAGC | 9 cut(s) | 75, 443, 458, 1168, 2012, 2429, 2852, 3125, 3160 |
| MabI | ACCWGGT | 1 cut(s) | 411 |
| MaeII | ACGT | 6 cut(s) | 42, 1390, 1417, 1935, 2838, 3069 |
| MaeIII | GTNAC | 6 cut(s) | 333, 2689, 2857, 3074, 3313, 3472 |
| MfeI | CAATTG | 3 cut(s) | 186, 2751, 2942 |
| MflI | RGATCY | 6 cut(s) | 328, 1291, 2233, 3371, 3611, 3775 |
| MhlI | GDGCHC | 3 cut(s) | 2354, 2912, 3057 |
| MlyI | GAGTC | 6 cut(s) | 705, 868, 1939, 2042, 3510, 3824 |
| MmeI | TCCRAC | 2 cut(s) | 3056, 3143 |
| Mph1103I | ATGCAT | 4 cut(s) | 1500, 1634, 1971, 2074 |
| MroNI | GCCGGC | 1 cut(s) | 1184 |
| MroXI | GAANNNNTTC | 4 cut(s) | 633, 1107, 1350, 1390 |
| MslI | CAYNNNNRTG | 4 cut(s) | 1457, 2013, 3481, 3695 |
| MspA1I | CMGCKG | 3 cut(s) | 25, 2420, 3357 |
| MspCI | CTTAAG | 2 cut(s) | 1985, 2137 |
| MspI | CCGG | 3 cut(s) | 960, 1185, 3329 |
| MspR9I | CCNGG | 5 cut(s) | 413, 1557, 3330, 3559, 3737 |
| MunI | CAATTG | 3 cut(s) | 186, 2751, 2942 |
| Mva1269I | GAATGC | 9 cut(s) | 281, 591, 1132, 1188, 1213, 1632, 1971, 3202, 3494 |
| MvaI | CCWGG | 4 cut(s) | 413, 1557, 3559, 3737 |
| MvnI | CGCG | 4 cut(s) | 73, 1536, 1664, 1755 |
| NaeI | GCCGGC | 1 cut(s) | 1186 |
| NciI | CCSGG | 1 cut(s) | 3330 |
| NgoMIV | GCCGGC | 1 cut(s) | 1184 |
| NheI | GCTAGC | 1 cut(s) | 731 |
| NlaIV | GGNNCC | 8 cut(s) | 347, 893, 1054, 1546, 1805, 2600, 2742, 3010 |
| NmuCI | GTSAC | 2 cut(s) | 333, 3472 |
| NsiI | ATGCAT | 4 cut(s) | 1500, 1634, 1971, 2074 |
| NspI | RCATGY | 2 cut(s) | 341, 3047 |
| NspV | TTCGAA | 4 cut(s) | 178, 637, 726, 1124 |
| PaeR7I | CTCGAG | 3 cut(s) | 1008, 1581, 3572 |
| PagI | TCATGA | 1 cut(s) | 3742 |
| PceI | AGGCCT | 1 cut(s) | 2512 |
| PciI | ACATGT | 1 cut(s) | 337 |
| PciSI | GCTCTTC | 1 cut(s) | 1121 |
| PctI | GAATGC | 9 cut(s) | 281, 591, 1132, 1188, 1213, 1632, 1971, 3202, 3494 |
| PdiI | GCCGGC | 1 cut(s) | 1186 |
| PdmI | GAANNNNTTC | 4 cut(s) | 633, 1107, 1350, 1390 |
| PflFI | GACNNNGTC | 1 cut(s) | 3157 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 3305 |
| PkrI | GCNGC | 9 cut(s) | 65, 433, 448, 1183, 2002, 2419, 2867, 3140, 3175 |
| PleI | GAGTC | 6 cut(s) | 705, 867, 1939, 2041, 3510, 3823 |
| PmaCI | CACGTG | 1 cut(s) | 1418 |
| PmlI | CACGTG | 1 cut(s) | 1418 |
| PpsI | GAGTC | 6 cut(s) | 705, 867, 1939, 2041, 3510, 3823 |
| Ppu21I | YACGTR | 1 cut(s) | 1418 |
| PscI | ACATGT | 1 cut(s) | 337 |
| PshBI | ATTAAT | 1 cut(s) | 165 |
| PsiI | TTATAA | 2 cut(s) | 1001, 1932 |
| Psp1406I | AACGTT | 2 cut(s) | 1390, 2838 |
| Psp6I | CCWGG | 4 cut(s) | 411, 1555, 3557, 3735 |
| PspCI | CACGTG | 1 cut(s) | 1418 |
| PspFI | CCCAGC | 1 cut(s) | 2602 |
| PspGI | CCWGG | 4 cut(s) | 411, 1555, 3557, 3735 |
| PspN4I | GGNNCC | 8 cut(s) | 347, 893, 1054, 1546, 1805, 2600, 2742, 3010 |
| PspPI | GGNCC | 3 cut(s) | 409, 940, 3642 |
| PspXI | VCTCGAGB | 1 cut(s) | 3572 |
| PstI | CTGCAG | 1 cut(s) | 2419 |
| PsuI | RGATCY | 6 cut(s) | 328, 1291, 2233, 3371, 3611, 3775 |
| PsyI | GACNNNGTC | 1 cut(s) | 3157 |
| PvuII | CAGCTG | 3 cut(s) | 25, 2420, 3357 |
| RsaI | GTAC | 8 cut(s) | 347, 559, 901, 1326, 1577, 2571, 2742, 3608 |
| RsaNI | GTAC | 8 cut(s) | 346, 558, 900, 1325, 1576, 2570, 2741, 3607 |
| RseI | CAYNNNNRTG | 4 cut(s) | 1457, 2013, 3481, 3695 |
| SapI | GCTCTTC | 1 cut(s) | 1121 |
| SatI | GCNGC | 9 cut(s) | 64, 432, 447, 1182, 2001, 2418, 2866, 3139, 3174 |
| Sau96I | GGNCC | 3 cut(s) | 409, 940, 3642 |
| ScaI | AGTACT | 1 cut(s) | 559 |
| SchI | GAGTC | 6 cut(s) | 705, 868, 1939, 2042, 3510, 3824 |
| ScrFI | CCNGG | 5 cut(s) | 413, 1557, 3330, 3559, 3737 |
| SduI | GDGCHC | 3 cut(s) | 2354, 2912, 3057 |
| SexAI | ACCWGGT | 1 cut(s) | 411 |
| SfcI | CTRYAG | 5 cut(s) | 648, 867, 1149, 2278, 2415 |
| Sfr274I | CTCGAG | 3 cut(s) | 1008, 1581, 3572 |
| SfuI | TTCGAA | 4 cut(s) | 178, 637, 726, 1124 |
| SinI | GGWCC | 3 cut(s) | 409, 940, 3642 |
| SlaI | CTCGAG | 3 cut(s) | 1008, 1581, 3572 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 1457, 2013, 3481, 3695 |
| SpeI | ACTAGT | 1 cut(s) | 3791 |
| SseBI | AGGCCT | 1 cut(s) | 2512 |
| SsiI | CCGC | 5 cut(s) | 607, 1534, 1662, 1755, 2573 |
| SspI | AATATT | 3 cut(s) | 1447, 1794, 2359 |
| StuI | AGGCCT | 1 cut(s) | 2512 |
| StyD4I | CCNGG | 5 cut(s) | 411, 1555, 3328, 3557, 3735 |
| StyI | CCWWGG | 3 cut(s) | 2078, 2513, 3730 |
| TaaI | ACNGT | 5 cut(s) | 484, 1489, 1618, 1928, 3157 |
| TaiI | ACGT | 6 cut(s) | 45, 1393, 1420, 1938, 2841, 3072 |
| TatI | WGTACW | 4 cut(s) | 557, 1324, 1575, 3606 |
| TscAI | CASTG | 4 cut(s) | 487, 2904, 2938, 3153 |
| TseFI | GTSAC | 2 cut(s) | 333, 3472 |
| TseI | GCWGC | 9 cut(s) | 63, 431, 446, 1181, 2000, 2417, 2865, 3138, 3173 |
| Tsp45I | GTSAC | 2 cut(s) | 333, 3472 |
| TspGWI | ACGGA | 4 cut(s) | 321, 1861, 1900, 2708 |
| TspRI | CASTG | 4 cut(s) | 487, 2904, 2938, 3153 |
| Tth111I | GACNNNGTC | 1 cut(s) | 3157 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 3305 |
| Vha464I | CTTAAG | 2 cut(s) | 1985, 2137 |
| VpaK11BI | GGWCC | 3 cut(s) | 409, 940, 3642 |
| VspI | ATTAAT | 1 cut(s) | 165 |
| XbaI | TCTAGA | 2 cut(s) | 2923, 3778 |
| XceI | RCATGY | 2 cut(s) | 341, 3047 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 247 |
| XhoI | CTCGAG | 3 cut(s) | 1008, 1581, 3572 |
| XmaJI | CCTAGG | 1 cut(s) | 2513 |
| XmnI | GAANNNNTTC | 4 cut(s) | 633, 1107, 1350, 1390 |
| ZraI | GACGTC | 1 cut(s) | 43 |
| ZrmI | AGTACT | 1 cut(s) | 559 |
| Zsp2I | ATGCAT | 4 cut(s) | 1500, 1634, 1971, 2074 |