TMV resistance protein N-like
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| WHD_ROQ1 | PF23282 | 2 - 46 | 3e-10 | Disease resistance protein Roq1-like, winged-helix domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AclWI | GGATC | 2 cut(s) | 251, 264 |
| AcsI | RAATTY | 1 cut(s) | 442 |
| AcuI | CTGAAG | 1 cut(s) | 270 |
| AfaI | GTAC | 1 cut(s) | 204 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 382, 424 |
| AflII | CTTAAG | 1 cut(s) | 320 |
| AgsI | TTSAA | 3 cut(s) | 236, 295, 442 |
| AluBI | AGCT | 1 cut(s) | 290 |
| AluI | AGCT | 1 cut(s) | 290 |
| Alw26I | GTCTC | 2 cut(s) | 63, 392 |
| AlwI | GGATC | 2 cut(s) | 251, 264 |
| AoxI | GGCC | 1 cut(s) | 526 |
| ApeKI | GCWGC | 1 cut(s) | 498 |
| ApoI | RAATTY | 1 cut(s) | 442 |
| AsuC2I | CCSGG | 1 cut(s) | 159 |
| AsuHPI | GGTGA | 1 cut(s) | 365 |
| AxyI | CCTNAGG | 1 cut(s) | 381 |
| BamHI | GGATCC | 1 cut(s) | 256 |
| BbsI | GAAGAC | 1 cut(s) | 389 |
| BbvI | GCAGC | 1 cut(s) | 510 |
| BccI | CCATC | 2 cut(s) | 422, 460 |
| BcnI | CCSGG | 1 cut(s) | 159 |
| BcoDI | GTCTC | 2 cut(s) | 63, 392 |
| BfrI | CTTAAG | 1 cut(s) | 320 |
| BglII | AGATCT | 1 cut(s) | 268 |
| BisI | GCNGC | 1 cut(s) | 499 |
| BlsI | GCNGC | 1 cut(s) | 500 |
| Bme1390I | CCNGG | 1 cut(s) | 159 |
| BmiI | GGNNCC | 1 cut(s) | 258 |
| BmrFI | CCNGG | 1 cut(s) | 159 |
| BmrI | ACTGGG | 1 cut(s) | 433 |
| BmsI | GCATC | 2 cut(s) | 87, 291 |
| BmuI | ACTGGG | 1 cut(s) | 433 |
| BpiI | GAAGAC | 1 cut(s) | 389 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 208, 240, 326, 358 |
| Bpu10I | CCTNAGC | 2 cut(s) | 186, 241 |
| BpuEI | CTTGAG | 4 cut(s) | 210, 374, 387, 527 |
| BpuMI | CCSGG | 1 cut(s) | 159 |
| Bsa29I | ATCGAT | 1 cut(s) | 51 |
| BsaI | GGTCTC | 1 cut(s) | 392 |
| BsaJI | CCNNGG | 2 cut(s) | 157, 252 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 382, 424 |
| Bse1I | ACTGG | 1 cut(s) | 428 |
| Bse21I | CCTNAGG | 1 cut(s) | 381 |
| BseCI | ATCGAT | 1 cut(s) | 51 |
| BseDI | CCNNGG | 2 cut(s) | 157, 252 |
| BseGI | GGATG | 2 cut(s) | 196, 433 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 382, 424 |
| BseMII | CTCAG | 1 cut(s) | 395 |
| BseNI | ACTGG | 1 cut(s) | 428 |
| BseXI | GCAGC | 1 cut(s) | 510 |
| BsgI | GTGCAG | 1 cut(s) | 404 |
| BshFI | GGCC | 1 cut(s) | 528 |
| BshVI | ATCGAT | 1 cut(s) | 51 |
| BsiSI | CCGG | 1 cut(s) | 159 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 382, 424 |
| BsmAI | GTCTC | 2 cut(s) | 63, 392 |
| BsmI | GAATGC | 3 cut(s) | 34, 149, 242 |
| BsnI | GGCC | 1 cut(s) | 528 |
| Bso31I | GGTCTC | 1 cut(s) | 392 |
| Bsp143I | GATC | 2 cut(s) | 256, 268 |
| Bsp19I | CCATGG | 1 cut(s) | 252 |
| BspANI | GGCC | 1 cut(s) | 528 |
| BspCNI | CTCAG | 1 cut(s) | 394 |
| BspDI | ATCGAT | 1 cut(s) | 51 |
| BspLI | GGNNCC | 1 cut(s) | 258 |
| BspPI | GGATC | 2 cut(s) | 251, 264 |
| BspTI | CTTAAG | 1 cut(s) | 320 |
| BspTNI | GGTCTC | 1 cut(s) | 392 |
| BsrI | ACTGG | 1 cut(s) | 428 |
| BssECI | CCNNGG | 2 cut(s) | 157, 252 |
| BssMI | GATC | 2 cut(s) | 256, 268 |
| BssT1I | CCWWGG | 1 cut(s) | 252 |
| Bst4CI | ACNGT | 1 cut(s) | 330 |
| BstAFI | CTTAAG | 1 cut(s) | 320 |
| BstDEI | CTNAG | 5 cut(s) | 186, 241, 311, 381, 410 |
| BstDSI | CCRYGG | 1 cut(s) | 252 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 380 |
| BstF5I | GGATG | 2 cut(s) | 196, 433 |
| BstKTI | GATC | 2 cut(s) | 259, 271 |
| BstMAI | GTCTC | 2 cut(s) | 63, 392 |
| BstMBI | GATC | 2 cut(s) | 256, 268 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 490 |
| BstNSI | RCATGY | 1 cut(s) | 250 |
| BstSCI | CCNGG | 1 cut(s) | 157 |
| BstV1I | GCAGC | 1 cut(s) | 510 |
| BstV2I | GAAGAC | 1 cut(s) | 389 |
| BstX2I | RGATCY | 2 cut(s) | 256, 268 |
| BstYI | RGATCY | 2 cut(s) | 256, 268 |
| Bsu15I | ATCGAT | 1 cut(s) | 51 |
| Bsu36I | CCTNAGG | 1 cut(s) | 381 |
| BsuRI | GGCC | 1 cut(s) | 528 |
| BsuTUI | ATCGAT | 1 cut(s) | 51 |
| BtgI | CCRYGG | 1 cut(s) | 252 |
| BtsCI | GGATG | 2 cut(s) | 196, 433 |
| BtsIMutI | CAGTG | 1 cut(s) | 421 |
| ClaI | ATCGAT | 1 cut(s) | 51 |
| CseI | GACGC | 1 cut(s) | 326 |
| Csp6I | GTAC | 1 cut(s) | 203 |
| CviAII | CATG | 4 cut(s) | 101, 247, 253, 357 |
| CviJI | RGCY | 6 cut(s) | 18, 290, 407, 432, 501, 528 |
| CviKI_1 | RGCY | 6 cut(s) | 18, 290, 407, 432, 501, 528 |
| CviQI | GTAC | 1 cut(s) | 203 |
| DdeI | CTNAG | 5 cut(s) | 186, 241, 311, 381, 410 |
| DpnI | GATC | 2 cut(s) | 258, 270 |
| DpnII | GATC | 2 cut(s) | 256, 268 |
| Eco130I | CCWWGG | 1 cut(s) | 252 |
| Eco147I | AGGCCT | 1 cut(s) | 528 |
| Eco31I | GGTCTC | 1 cut(s) | 392 |
| Eco57I | CTGAAG | 1 cut(s) | 270 |
| Eco81I | CCTNAGG | 1 cut(s) | 381 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 380 |
| EcoRI | GAATTC | 1 cut(s) | 442 |
| EcoT14I | CCWWGG | 1 cut(s) | 252 |
| EcoT22I | ATGCAT | 3 cut(s) | 102, 149, 306 |
| ErhI | CCWWGG | 1 cut(s) | 252 |
| FaeI | CATG | 4 cut(s) | 104, 250, 256, 360 |
| FalI | AAGNNNNNCTT | 3 cut(s) | 360, 392, 524 |
| FatI | CATG | 4 cut(s) | 100, 246, 252, 356 |
| FauNDI | CATATG | 1 cut(s) | 489 |
| Fnu4HI | GCNGC | 1 cut(s) | 499 |
| FokI | GGATG | 2 cut(s) | 203, 440 |
| Fsp4HI | GCNGC | 1 cut(s) | 499 |
| GluI | GCNGC | 1 cut(s) | 499 |
| HaeIII | GGCC | 1 cut(s) | 528 |
| HapII | CCGG | 1 cut(s) | 159 |
| HgaI | GACGC | 1 cut(s) | 326 |
| Hin1II | CATG | 4 cut(s) | 104, 250, 256, 360 |
| HincII | GTYRAC | 1 cut(s) | 364 |
| HindII | GTYRAC | 1 cut(s) | 364 |
| HinfI | GANTC | 1 cut(s) | 414 |
| HpaII | CCGG | 1 cut(s) | 159 |
| HphI | GGTGA | 1 cut(s) | 365 |
| Hpy166II | GTNNAC | 3 cut(s) | 180, 364, 373 |
| Hpy188I | TCNGA | 1 cut(s) | 126 |
| Hpy188III | TCNNGA | 3 cut(s) | 137, 272, 467 |
| Hpy8I | GTNNAC | 3 cut(s) | 180, 364, 373 |
| HpyAV | CCTTC | 3 cut(s) | 294, 386, 526 |
| HpyCH4III | ACNGT | 1 cut(s) | 330 |
| HpyCH4V | TGCA | 6 cut(s) | 32, 100, 147, 304, 421, 493 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 490 |
| HpyF3I | CTNAG | 5 cut(s) | 186, 241, 311, 381, 410 |
| Hsp92II | CATG | 4 cut(s) | 104, 250, 256, 360 |
| Kzo9I | GATC | 2 cut(s) | 256, 268 |
| LpnPI | CCDG | 7 cut(s) | 18, 172, 368, 409, 431, 480, 542 |
| Lsp1109I | GCAGC | 1 cut(s) | 510 |
| LweI | GCATC | 2 cut(s) | 87, 291 |
| MaeIII | GTNAC | 2 cut(s) | 324, 338 |
| MalI | GATC | 2 cut(s) | 258, 270 |
| MboI | GATC | 2 cut(s) | 256, 268 |
| MboII | GAAGA | 1 cut(s) | 389 |
| MfeI | CAATTG | 2 cut(s) | 129, 231 |
| MflI | RGATCY | 2 cut(s) | 256, 268 |
| MluCI | AATT | 4 cut(s) | 129, 231, 442, 543 |
| MnlI | CCTC | 4 cut(s) | 22, 210, 390, 411 |
| Mph1103I | ATGCAT | 3 cut(s) | 102, 149, 306 |
| MseI | TTAA | 4 cut(s) | 150, 321, 542, 547 |
| MslI | CAYNNNNRTG | 3 cut(s) | 53, 251, 426 |
| MspCI | CTTAAG | 1 cut(s) | 320 |
| MspI | CCGG | 1 cut(s) | 159 |
| MspR9I | CCNGG | 1 cut(s) | 159 |
| MunI | CAATTG | 2 cut(s) | 129, 231 |
| Mva1269I | GAATGC | 3 cut(s) | 34, 149, 242 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 490 |
| NciI | CCSGG | 1 cut(s) | 159 |
| NcoI | CCATGG | 1 cut(s) | 252 |
| NdeI | CATATG | 1 cut(s) | 489 |
| NdeII | GATC | 2 cut(s) | 256, 268 |
| NlaIII | CATG | 4 cut(s) | 104, 250, 256, 360 |
| NlaIV | GGNNCC | 1 cut(s) | 258 |
| NmuCI | GTSAC | 1 cut(s) | 338 |
| NsiI | ATGCAT | 3 cut(s) | 102, 149, 306 |
| NspI | RCATGY | 1 cut(s) | 250 |
| PceI | AGGCCT | 1 cut(s) | 528 |
| PctI | GAATGC | 3 cut(s) | 34, 149, 242 |
| PfeI | GAWTC | 1 cut(s) | 414 |
| PkrI | GCNGC | 1 cut(s) | 500 |
| PspN4I | GGNNCC | 1 cut(s) | 258 |
| PsuI | RGATCY | 2 cut(s) | 256, 268 |
| RsaI | GTAC | 1 cut(s) | 204 |
| RsaNI | GTAC | 1 cut(s) | 203 |
| RseI | CAYNNNNRTG | 3 cut(s) | 53, 251, 426 |
| SaqAI | TTAA | 4 cut(s) | 150, 321, 542, 547 |
| SatI | GCNGC | 1 cut(s) | 499 |
| Sau3AI | GATC | 2 cut(s) | 256, 268 |
| ScrFI | CCNGG | 1 cut(s) | 159 |
| SetI | ASST | 3 cut(s) | 292, 378, 537 |
| SfaNI | GCATC | 2 cut(s) | 87, 291 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 53, 251, 426 |
| SmlI | CTYRAG | 5 cut(s) | 225, 320, 389, 402, 506 |
| SmoI | CTYRAG | 5 cut(s) | 225, 320, 389, 402, 506 |
| Sse9I | AATT | 4 cut(s) | 129, 231, 442, 543 |
| SseBI | AGGCCT | 1 cut(s) | 528 |
| StuI | AGGCCT | 1 cut(s) | 528 |
| StyD4I | CCNGG | 1 cut(s) | 157 |
| StyI | CCWWGG | 1 cut(s) | 252 |
| TaaI | ACNGT | 1 cut(s) | 330 |
| TaqI | TCGA | 3 cut(s) | 51, 138, 350 |
| TasI | AATT | 4 cut(s) | 129, 231, 442, 543 |
| TatI | WGTACW | 1 cut(s) | 202 |
| TfiI | GAWTC | 1 cut(s) | 414 |
| Tru1I | TTAA | 4 cut(s) | 150, 321, 542, 547 |
| Tru9I | TTAA | 4 cut(s) | 150, 321, 542, 547 |
| TscAI | CASTG | 1 cut(s) | 428 |
| TseFI | GTSAC | 1 cut(s) | 338 |
| TseI | GCWGC | 1 cut(s) | 498 |
| Tsp45I | GTSAC | 1 cut(s) | 338 |
| TspDTI | ATGAA | 2 cut(s) | 156, 476 |
| TspRI | CASTG | 1 cut(s) | 428 |
| Vha464I | CTTAAG | 1 cut(s) | 320 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 380 |
| XapI | RAATTY | 1 cut(s) | 442 |
| XceI | RCATGY | 1 cut(s) | 250 |
| Zsp2I | ATGCAT | 3 cut(s) | 102, 149, 306 |