Disease resistance protein (TIR-NBS-LRR class)
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| WD40_WDHD1_1st | PF24817 | 20 - 179 | 1.8e-12 | WDHD1 first WD40 domain |
| Beta-prop_THOC3 | PF25174 | 24 - 143 | 4.1e-16 | THOC3 beta-propeller domain |
| Beta-prop_WDR5 | PF25175 | 26 - 177 | 1.1e-28 | WDR5 beta-propeller domain |
| WD40_CDC20-Fz | PF24807 | 30 - 222 | 1.1e-23 | CDC20/Fizzy WD40 domain |
| Beta-prop_WDR3_1st | PF25173 | 31 - 221 | 5.6e-64 | WDR3 first beta-propeller domain |
| Beta-prop_WDR36-Utp21_1st | PF25171 | 40 - 173 | 2.4e-14 | WDR36/Utp21 first beta-propeller |
| Beta-prop_TEP1_2nd | PF25047 | 40 - 136 | 2.6e-07 | TEP-1 second beta-propeller |
| Beta-prop_WDR36-Utp21_2nd | PF25168 | 41 - 136 | 3.2e-06 | WDR36/Utp21 second beta-propeller domain |
| Beta-prop_EML_2 | PF23414 | 41 - 182 | 3.6e-14 | Echinoderm microtubule-associated protein second beta-propeller |
| Beta-prop_CAF1B_HIR1 | PF24105 | 44 - 223 | 7.8e-13 | CAF1B/HIR1 beta-propeller domain |
| Beta-prop_EML | PF23409 | 45 - 171 | 1.5e-11 | Echinoderm microtubule-associated protein first beta-propeller |
| WD40_Prp19 | PF24814 | 48 - 120 | 1e-06 | Prp19 WD40 domain |
| WDR55 | PF24796 | 57 - 224 | 2.1e-14 | WDR55 |
| Beta-prop_WDR3_2nd | PF25172 | 57 - 220 | 2e-24 | WDR3 second beta-propeller domain |
| Beta-prop_SCAP | PF24017 | 57 - 175 | 1.9e-13 | SCAP Beta-propeller |
| Beta-prop_IFT140_1st | PF23383 | 58 - 135 | 2e-06 | IFT140 first beta-propeller |
| WD40 | PF00400 | 60 - 90 | 7.1e-07 | WD domain, G-beta repeat |
| Beta-prop_WDR75_1st | PF23869 | 65 - 134 | 2.1e-06 | WD repeat-containing protein 75 first beta-propeller |
| WD40_MABP1-WDR62_2nd | PF24782 | 75 - 175 | 2.3e-09 | MABP1/WDR62 second WD40 domain |
| WD40 | PF00400 | 96 - 132 | 6e-07 | WD domain, G-beta repeat |
| EIF3I | PF24805 | 100 - 176 | 6.3e-10 | EIF3I |
| WD40_Gbeta | PF25391 | 101 - 224 | 1.9e-12 | G protein beta WD-40 repeat protein |
| WD40_Prp19 | PF24814 | 115 - 224 | 2.9e-19 | Prp19 WD40 domain |
| WD40 | PF00400 | 140 - 174 | 1.6e-06 | WD domain, G-beta repeat |
| Beta-prop_WDR5 | PF25175 | 141 - 223 | 4.1e-13 | WDR5 beta-propeller domain |
| Beta-prop_WDR3_2nd | PF25172 | 183 - 227 | 2e-06 | WDR3 second beta-propeller domain |
| WD40 | PF00400 | 184 - 219 | 6.1e-07 | WD domain, G-beta repeat |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 206 |
| Acc36I | ACCTGC | 2 cut(s) | 206, 293 |
| AccII | CGCG | 3 cut(s) | 137, 139, 429 |
| AciI | CCGC | 6 cut(s) | 36, 60, 206, 427, 429, 775 |
| AclWI | GGATC | 3 cut(s) | 528, 596, 609 |
| AcoI | YGGCCR | 2 cut(s) | 568, 682 |
| AcsI | RAATTY | 2 cut(s) | 261, 582 |
| AcyI | GRCGYC | 1 cut(s) | 45 |
| AfaI | GTAC | 3 cut(s) | 14, 77, 335 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 376, 597 |
| AgsI | TTSAA | 9 cut(s) | 66, 301, 511, 535, 751, 811, 868, 877, 1037 |
| AjnI | CCWGG | 1 cut(s) | 111 |
| AluBI | AGCT | 3 cut(s) | 723, 754, 989 |
| AluI | AGCT | 3 cut(s) | 723, 754, 989 |
| Alw26I | GTCTC | 4 cut(s) | 428, 628, 966, 1027 |
| AlwI | GGATC | 3 cut(s) | 528, 596, 609 |
| Ama87I | CYCGRG | 1 cut(s) | 625 |
| AoxI | GGCC | 6 cut(s) | 33, 108, 207, 367, 568, 682 |
| ApoI | RAATTY | 2 cut(s) | 261, 582 |
| AspLEI | GCGC | 2 cut(s) | 139, 909 |
| AspS9I | GGNCC | 3 cut(s) | 33, 109, 588 |
| AsuHPI | GGTGA | 5 cut(s) | 16, 187, 204, 773, 970 |
| AvaI | CYCGRG | 1 cut(s) | 625 |
| AvaII | GGWCC | 1 cut(s) | 588 |
| AxyI | CCTNAGG | 1 cut(s) | 954 |
| BalI | TGGCCA | 2 cut(s) | 570, 684 |
| BamHI | GGATCC | 1 cut(s) | 601 |
| BccI | CCATC | 6 cut(s) | 74, 242, 397, 579, 955, 962 |
| BciT130I | CCWGG | 1 cut(s) | 113 |
| BcoDI | GTCTC | 4 cut(s) | 428, 628, 966, 1027 |
| BfaI | CTAG | 1 cut(s) | 471 |
| BfmI | CTRYAG | 1 cut(s) | 633 |
| BfuAI | ACCTGC | 2 cut(s) | 206, 293 |
| BisI | GCNGC | 3 cut(s) | 36, 207, 776 |
| BlsI | GCNGC | 3 cut(s) | 37, 208, 777 |
| Bme1390I | CCNGG | 1 cut(s) | 113 |
| Bme18I | GGWCC | 1 cut(s) | 588 |
| BmeT110I | CYCGRG | 1 cut(s) | 625 |
| BmgT120I | GGNCC | 3 cut(s) | 33, 109, 588 |
| BmiI | GGNNCC | 4 cut(s) | 34, 85, 603, 951 |
| BmrFI | CCNGG | 1 cut(s) | 113 |
| BmsI | GCATC | 1 cut(s) | 368 |
| BpmI | CTGGAG | 2 cut(s) | 384, 1011 |
| BsaAI | YACGTR | 1 cut(s) | 75 |
| BsaBI | GATNNNNATC | 1 cut(s) | 600 |
| BsaHI | GRCGYC | 1 cut(s) | 45 |
| BsaJI | CCNNGG | 2 cut(s) | 111, 427 |
| BsaWI | WCCGGW | 1 cut(s) | 86 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 68, 98, 151, 181 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 376, 597 |
| Bse21I | CCTNAGG | 1 cut(s) | 954 |
| Bse3DI | GCAATG | 1 cut(s) | 201 |
| Bse8I | GATNNNNATC | 1 cut(s) | 600 |
| BseBI | CCWGG | 1 cut(s) | 113 |
| BseDI | CCNNGG | 2 cut(s) | 111, 427 |
| BseGI | GGATG | 2 cut(s) | 181, 400 |
| BseJI | GATNNNNATC | 1 cut(s) | 600 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 376, 597 |
| BseMI | GCAATG | 1 cut(s) | 201 |
| BseMII | CTCAG | 3 cut(s) | 31, 702, 945 |
| BseYI | CCCAGC | 1 cut(s) | 121 |
| Bsh1236I | CGCG | 3 cut(s) | 137, 139, 429 |
| BshFI | GGCC | 6 cut(s) | 35, 110, 209, 369, 570, 684 |
| BsiHKCI | CYCGRG | 1 cut(s) | 625 |
| BsiSI | CCGG | 4 cut(s) | 57, 87, 107, 919 |
| BsiWI | CGTACG | 1 cut(s) | 75 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 376, 597 |
| BsmAI | GTCTC | 4 cut(s) | 428, 628, 966, 1027 |
| BsmBI | CGTCTC | 1 cut(s) | 428 |
| BsnI | GGCC | 6 cut(s) | 35, 110, 209, 369, 570, 684 |
| BsoBI | CYCGRG | 1 cut(s) | 625 |
| Bsp143I | GATC | 3 cut(s) | 451, 520, 601 |
| BspACI | CCGC | 6 cut(s) | 36, 60, 206, 427, 429, 775 |
| BspANI | GGCC | 6 cut(s) | 35, 110, 209, 369, 570, 684 |
| BspCNI | CTCAG | 3 cut(s) | 30, 703, 946 |
| BspFNI | CGCG | 3 cut(s) | 137, 139, 429 |
| BspHI | TCATGA | 1 cut(s) | 982 |
| BspLI | GGNNCC | 4 cut(s) | 34, 85, 603, 951 |
| BspMAI | CTGCAG | 1 cut(s) | 637 |
| BspMI | ACCTGC | 2 cut(s) | 206, 293 |
| BspPI | GGATC | 3 cut(s) | 528, 596, 609 |
| BsrDI | GCAATG | 1 cut(s) | 201 |
| BssECI | CCNNGG | 2 cut(s) | 111, 427 |
| BssMI | GATC | 3 cut(s) | 451, 520, 601 |
| BssNI | GRCGYC | 1 cut(s) | 45 |
| Bst2UI | CCWGG | 1 cut(s) | 113 |
| Bst4CI | ACNGT | 4 cut(s) | 333, 802, 856, 1021 |
| BstACI | GRCGYC | 1 cut(s) | 45 |
| BstBAI | YACGTR | 1 cut(s) | 75 |
| BstC8I | GCNNGC | 6 cut(s) | 135, 431, 435, 554, 831, 911 |
| BstDEI | CTNAG | 4 cut(s) | 17, 647, 711, 954 |
| BstDSI | CCRYGG | 1 cut(s) | 427 |
| BstEII | GGTNACC | 1 cut(s) | 193 |
| BstF5I | GGATG | 2 cut(s) | 181, 400 |
| BstFNI | CGCG | 3 cut(s) | 137, 139, 429 |
| BstHHI | GCGC | 2 cut(s) | 139, 909 |
| BstKTI | GATC | 3 cut(s) | 454, 523, 604 |
| BstMAI | GTCTC | 4 cut(s) | 428, 628, 966, 1027 |
| BstMBI | GATC | 3 cut(s) | 451, 520, 601 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 323, 915 |
| BstNI | CCWGG | 1 cut(s) | 113 |
| BstNSI | RCATGY | 2 cut(s) | 437, 556 |
| BstPI | GGTNACC | 1 cut(s) | 193 |
| BstSCI | CCNGG | 1 cut(s) | 111 |
| BstSFI | CTRYAG | 1 cut(s) | 633 |
| BstUI | CGCG | 3 cut(s) | 137, 139, 429 |
| BstX2I | RGATCY | 2 cut(s) | 520, 601 |
| BstYI | RGATCY | 2 cut(s) | 520, 601 |
| Bsu36I | CCTNAGG | 1 cut(s) | 954 |
| BsuRI | GGCC | 6 cut(s) | 35, 110, 209, 369, 570, 684 |
| BtgI | CCRYGG | 1 cut(s) | 427 |
| BtsCI | GGATG | 2 cut(s) | 181, 400 |
| BtsIMutI | CAGTG | 2 cut(s) | 276, 447 |
| BveI | ACCTGC | 2 cut(s) | 206, 293 |
| Cac8I | GCNNGC | 6 cut(s) | 135, 431, 435, 554, 831, 911 |
| CciI | TCATGA | 1 cut(s) | 982 |
| CfoI | GCGC | 2 cut(s) | 139, 909 |
| Cfr13I | GGNCC | 3 cut(s) | 33, 109, 588 |
| Cfr42I | CCGCGG | 1 cut(s) | 430 |
| CseI | GACGC | 2 cut(s) | 34, 128 |
| Csp6I | GTAC | 3 cut(s) | 13, 76, 334 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 325, 360 |
| CviAII | CATG | 3 cut(s) | 434, 553, 983 |
| CviQI | GTAC | 3 cut(s) | 13, 76, 334 |
| DdeI | CTNAG | 4 cut(s) | 17, 647, 711, 954 |
| DpnI | GATC | 3 cut(s) | 453, 522, 603 |
| DpnII | GATC | 3 cut(s) | 451, 520, 601 |
| EaeI | YGGCCR | 2 cut(s) | 568, 682 |
| Eco32I | GATATC | 1 cut(s) | 419 |
| Eco47I | GGWCC | 1 cut(s) | 588 |
| Eco81I | CCTNAGG | 1 cut(s) | 954 |
| Eco88I | CYCGRG | 1 cut(s) | 625 |
| Eco91I | GGTNACC | 1 cut(s) | 193 |
| EcoO65I | GGTNACC | 1 cut(s) | 193 |
| EcoRII | CCWGG | 1 cut(s) | 111 |
| EcoRV | GATATC | 1 cut(s) | 419 |
| Esp3I | CGTCTC | 1 cut(s) | 428 |
| FaeI | CATG | 3 cut(s) | 437, 556, 986 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 656, 688 |
| FatI | CATG | 3 cut(s) | 433, 552, 982 |
| FauI | CCCGC | 1 cut(s) | 422 |
| Fnu4HI | GCNGC | 3 cut(s) | 36, 207, 776 |
| FokI | GGATG | 2 cut(s) | 168, 407 |
| Fsp4HI | GCNGC | 3 cut(s) | 36, 207, 776 |
| FspBI | CTAG | 1 cut(s) | 471 |
| GlaI | GCGC | 2 cut(s) | 138, 908 |
| GluI | GCNGC | 3 cut(s) | 36, 207, 776 |
| GsaI | CCCAGC | 1 cut(s) | 125 |
| GsuI | CTGGAG | 2 cut(s) | 384, 1011 |
| HaeIII | GGCC | 6 cut(s) | 35, 110, 209, 369, 570, 684 |
| HapII | CCGG | 4 cut(s) | 57, 87, 107, 919 |
| HgaI | GACGC | 2 cut(s) | 34, 128 |
| HhaI | GCGC | 2 cut(s) | 139, 909 |
| Hin1I | GRCGYC | 1 cut(s) | 45 |
| Hin1II | CATG | 3 cut(s) | 437, 556, 986 |
| Hin6I | GCGC | 2 cut(s) | 137, 907 |
| HinP1I | GCGC | 2 cut(s) | 137, 907 |
| HinfI | GANTC | 4 cut(s) | 269, 467, 535, 887 |
| HpaII | CCGG | 4 cut(s) | 57, 87, 107, 919 |
| HphI | GGTGA | 5 cut(s) | 16, 187, 204, 773, 970 |
| Hpy188I | TCNGA | 4 cut(s) | 20, 228, 274, 1027 |
| Hpy188III | TCNNGA | 5 cut(s) | 363, 605, 819, 839, 983 |
| HpyAV | CCTTC | 5 cut(s) | 49, 180, 505, 671, 992 |
| HpyCH4III | ACNGT | 4 cut(s) | 333, 802, 856, 1021 |
| HpyCH4IV | ACGT | 1 cut(s) | 74 |
| HpyCH4V | TGCA | 7 cut(s) | 201, 359, 552, 556, 635, 797, 941 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 323, 915 |
| HpyF3I | CTNAG | 4 cut(s) | 17, 647, 711, 954 |
| HpySE526I | ACGT | 1 cut(s) | 74 |
| Hsp92I | GRCGYC | 1 cut(s) | 45 |
| Hsp92II | CATG | 3 cut(s) | 437, 556, 986 |
| HspAI | GCGC | 2 cut(s) | 137, 907 |
| KspI | CCGCGG | 1 cut(s) | 430 |
| Kzo9I | GATC | 3 cut(s) | 451, 520, 601 |
| LmnI | GCTCC | 4 cut(s) | 89, 109, 158, 949 |
| LweI | GCATC | 1 cut(s) | 368 |
| MaeI | CTAG | 1 cut(s) | 471 |
| MaeII | ACGT | 1 cut(s) | 74 |
| MaeIII | GTNAC | 5 cut(s) | 193, 319, 445, 473, 1015 |
| MalI | GATC | 3 cut(s) | 453, 522, 603 |
| MboI | GATC | 3 cut(s) | 451, 520, 601 |
| MboII | GAAGA | 6 cut(s) | 213, 740, 934, 943, 977, 1007 |
| MflI | RGATCY | 2 cut(s) | 520, 601 |
| MlsI | TGGCCA | 2 cut(s) | 570, 684 |
| MluCI | AATT | 4 cut(s) | 261, 503, 582, 660 |
| MluNI | TGGCCA | 2 cut(s) | 570, 684 |
| MnlI | CCTC | 8 cut(s) | 26, 220, 359, 403, 502, 835, 874, 949 |
| Mox20I | TGGCCA | 2 cut(s) | 570, 684 |
| MscI | TGGCCA | 2 cut(s) | 570, 684 |
| MseI | TTAA | 1 cut(s) | 663 |
| MslI | CAYNNNNRTG | 1 cut(s) | 576 |
| Msp20I | TGGCCA | 2 cut(s) | 570, 684 |
| MspA1I | CMGCKG | 1 cut(s) | 429 |
| MspI | CCGG | 4 cut(s) | 57, 87, 107, 919 |
| MspR9I | CCNGG | 1 cut(s) | 113 |
| MvaI | CCWGG | 1 cut(s) | 113 |
| MvnI | CGCG | 3 cut(s) | 137, 139, 429 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 323, 915 |
| NdeII | GATC | 3 cut(s) | 451, 520, 601 |
| NlaIII | CATG | 3 cut(s) | 437, 556, 986 |
| NlaIV | GGNNCC | 4 cut(s) | 34, 85, 603, 951 |
| NmuCI | GTSAC | 2 cut(s) | 193, 445 |
| NspI | RCATGY | 2 cut(s) | 437, 556 |
| PaeI | GCATGC | 2 cut(s) | 437, 556 |
| PagI | TCATGA | 1 cut(s) | 982 |
| PaqCI | CACCTGC | 1 cut(s) | 206 |
| PfeI | GAWTC | 4 cut(s) | 269, 467, 535, 887 |
| Pfl23II | CGTACG | 1 cut(s) | 75 |
| PkrI | GCNGC | 3 cut(s) | 37, 208, 777 |
| Ppu21I | YACGTR | 1 cut(s) | 75 |
| Psp6I | CCWGG | 1 cut(s) | 111 |
| PspEI | GGTNACC | 1 cut(s) | 193 |
| PspFI | CCCAGC | 1 cut(s) | 121 |
| PspGI | CCWGG | 1 cut(s) | 111 |
| PspLI | CGTACG | 1 cut(s) | 75 |
| PspN4I | GGNNCC | 4 cut(s) | 34, 85, 603, 951 |
| PspPI | GGNCC | 3 cut(s) | 33, 109, 588 |
| PstI | CTGCAG | 1 cut(s) | 637 |
| PsuI | RGATCY | 2 cut(s) | 520, 601 |
| RsaI | GTAC | 3 cut(s) | 14, 77, 335 |
| RsaNI | GTAC | 3 cut(s) | 13, 76, 334 |
| RseI | CAYNNNNRTG | 1 cut(s) | 576 |
| SacII | CCGCGG | 1 cut(s) | 430 |
| SaqAI | TTAA | 1 cut(s) | 663 |
| SatI | GCNGC | 3 cut(s) | 36, 207, 776 |
| Sau3AI | GATC | 3 cut(s) | 451, 520, 601 |
| Sau96I | GGNCC | 3 cut(s) | 33, 109, 588 |
| ScrFI | CCNGG | 1 cut(s) | 113 |
| SfaNI | GCATC | 1 cut(s) | 368 |
| SfcI | CTRYAG | 1 cut(s) | 633 |
| Sfr303I | CCGCGG | 1 cut(s) | 430 |
| SgrBI | CCGCGG | 1 cut(s) | 430 |
| SinI | GGWCC | 1 cut(s) | 588 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 576 |
| SphI | GCATGC | 2 cut(s) | 437, 556 |
| Sse9I | AATT | 4 cut(s) | 261, 503, 582, 660 |
| SsiI | CCGC | 6 cut(s) | 36, 60, 206, 427, 429, 775 |
| SspI | AATATT | 1 cut(s) | 864 |
| SspMI | CTAG | 1 cut(s) | 471 |
| StyD4I | CCNGG | 1 cut(s) | 111 |
| TaaI | ACNGT | 4 cut(s) | 333, 802, 856, 1021 |
| TaiI | ACGT | 1 cut(s) | 77 |
| TaqII | GACCGA | 1 cut(s) | 654 |
| TasI | AATT | 4 cut(s) | 261, 503, 582, 660 |
| TauI | GCSGC | 3 cut(s) | 38, 209, 778 |
| TfiI | GAWTC | 4 cut(s) | 269, 467, 535, 887 |
| Tru1I | TTAA | 1 cut(s) | 663 |
| Tru9I | TTAA | 1 cut(s) | 663 |
| TscAI | CASTG | 2 cut(s) | 283, 454 |
| TseFI | GTSAC | 2 cut(s) | 193, 445 |
| Tsp45I | GTSAC | 2 cut(s) | 193, 445 |
| TspDTI | ATGAA | 2 cut(s) | 624, 999 |
| TspRI | CASTG | 2 cut(s) | 283, 454 |
| VpaK11BI | GGWCC | 1 cut(s) | 588 |
| XapI | RAATTY | 2 cut(s) | 261, 582 |
| XceI | RCATGY | 2 cut(s) | 437, 556 |
| XspI | CTAG | 1 cut(s) | 471 |