Disease resistance protein (TIR-NBS-LRR class)
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| TIR | PF01582 | 16 - 193 | 9.1e-54 | TIR domain |
| TIR_2 | PF13676 | 19 - 114 | 7.7e-13 | TIR domain |
| NB-ARC | PF00931 | 214 - 361 | 5.3e-11 | NB-ARC domain |
| WHD_ROQ1 | PF23282 | 431 - 502 | 1.5e-21 | Disease resistance protein Roq1-like, winged-helix domain |
| LRR_14 | PF23598 | 717 - 809 | 1.8e-06 | Leucine-rich repeat region |
| LRR_13 | PF23286 | 783 - 968 | 5e-16 | Disease resistance protein RPS4B-like, leucine-rich repeats |
| LRR_14 | PF23598 | 788 - 867 | 9.9e-11 | Leucine-rich repeat region |
| C-JID | PF20160 | 1029 - 1166 | 2.6e-13 | C-JID domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 372, 1004 |
| AarI | CACCTGC | 1 cut(s) | 1117 |
| Acc36I | ACCTGC | 3 cut(s) | 764, 1117, 2701 |
| Acc65I | GGTACC | 1 cut(s) | 776 |
| AccB1I | GGYRCC | 1 cut(s) | 776 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1477 |
| AccII | CGCG | 4 cut(s) | 77, 1497, 3570, 3622 |
| AccIII | TCCGGA | 1 cut(s) | 1390 |
| AclI | AACGTT | 3 cut(s) | 1631, 3055, 3077 |
| AclWI | GGATC | 6 cut(s) | 332, 1462, 1508, 1631, 1644, 3139 |
| AcoI | YGGCCR | 3 cut(s) | 426, 3493, 3623 |
| AcsI | RAATTY | 9 cut(s) | 609, 1149, 1996, 2020, 2075, 2207, 2403, 2676, 3521 |
| AcuI | CTGAAG | 5 cut(s) | 612, 1241, 1530, 1853, 3001 |
| AcvI | CACGTG | 1 cut(s) | 3355 |
| AdeI | CACNNNGTG | 2 cut(s) | 1465, 2585 |
| AfaI | GTAC | 7 cut(s) | 351, 778, 907, 1099, 1507, 3190, 3595 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 1397, 1477, 3580 |
| AflII | CTTAAG | 2 cut(s) | 1666, 2777 |
| AflIII | ACRYGT | 3 cut(s) | 310, 346, 3354 |
| AhlI | ACTAGT | 3 cut(s) | 1042, 3590, 3596 |
| AjiI | CACGTC | 1 cut(s) | 934 |
| AjnI | CCWGG | 2 cut(s) | 1516, 1820 |
| AjuI | GAANNNNNNNTTGG | 6 cut(s) | 599, 631, 773, 805, 963, 995 |
| AleI | CACNNNNGTG | 1 cut(s) | 1542 |
| Alw21I | GWGCWC | 5 cut(s) | 1812, 2633, 2829, 2867, 3318 |
| Alw44I | GTGCAC | 1 cut(s) | 2863 |
| AlwI | GGATC | 6 cut(s) | 332, 1462, 1508, 1631, 1644, 3139 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 1085, 2897 |
| Ama87I | CYCGRG | 2 cut(s) | 1011, 2567 |
| Aor13HI | TCCGGA | 1 cut(s) | 1390 |
| AoxI | GGCC | 9 cut(s) | 426, 982, 1852, 2169, 3331, 3493, 3499, 3571, 3623 |
| ApaI | GGGCCC | 1 cut(s) | 2173 |
| ApaLI | GTGCAC | 1 cut(s) | 2863 |
| ApeKI | GCWGC | 6 cut(s) | 113, 455, 1085, 1142, 1373, 2658 |
| ApoI | RAATTY | 9 cut(s) | 609, 1149, 1996, 2020, 2075, 2207, 2403, 2676, 3521 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 642, 2676 |
| Asp718I | GGTACC | 1 cut(s) | 776 |
| AspLEI | GCGC | 2 cut(s) | 77, 1527 |
| AspS9I | GGNCC | 5 cut(s) | 179, 983, 2169, 2170, 3331 |
| AsuC2I | CCSGG | 2 cut(s) | 987, 3090 |
| AsuHPI | GGTGA | 2 cut(s) | 1556, 3293 |
| AsuII | TTCGAA | 1 cut(s) | 735 |
| AvaI | CYCGRG | 2 cut(s) | 1011, 2567 |
| AvaII | GGWCC | 1 cut(s) | 179 |
| BaeGI | GKGCMC | 3 cut(s) | 2173, 2256, 2867 |
| BalI | TGGCCA | 2 cut(s) | 428, 3495 |
| BamHI | GGATCC | 1 cut(s) | 1636 |
| BanI | GGYRCC | 1 cut(s) | 776 |
| BanII | GRGCYC | 2 cut(s) | 1812, 2173 |
| BauI | CACGAG | 2 cut(s) | 1676, 2866 |
| BbrPI | CACGTG | 1 cut(s) | 3355 |
| BbsI | GAAGAC | 4 cut(s) | 600, 1322, 2828, 3192 |
| Bbv12I | GWGCWC | 5 cut(s) | 1812, 2633, 2829, 2867, 3318 |
| BbvCI | CCTCAGC | 1 cut(s) | 3156 |
| BbvI | GCAGC | 6 cut(s) | 100, 467, 1072, 1129, 1360, 2645 |
| BccI | CCATC | 8 cut(s) | 111, 349, 1277, 1391, 1786, 2476, 2765, 3437 |
| BceAI | ACGGC | 2 cut(s) | 888, 3354 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 3387, 3421 |
| BciT130I | CCWGG | 2 cut(s) | 1518, 1822 |
| BcnI | CCSGG | 2 cut(s) | 987, 3090 |
| BcuI | ACTAGT | 3 cut(s) | 1042, 3590, 3596 |
| BfaI | CTAG | 7 cut(s) | 839, 1043, 2694, 2840, 3558, 3591, 3597 |
| BfmI | CTRYAG | 5 cut(s) | 657, 873, 1143, 2380, 3289 |
| BfrI | CTTAAG | 2 cut(s) | 1666, 2777 |
| BfuAI | ACCTGC | 3 cut(s) | 764, 1117, 2701 |
| BmcAI | AGTACT | 2 cut(s) | 1507, 3595 |
| Bme1390I | CCNGG | 4 cut(s) | 987, 1518, 1822, 3090 |
| Bme18I | GGWCC | 1 cut(s) | 179 |
| BmeT110I | CYCGRG | 2 cut(s) | 1011, 2567 |
| BmgBI | CACGTC | 1 cut(s) | 934 |
| BmgT120I | GGNCC | 5 cut(s) | 179, 983, 2169, 2170, 3331 |
| BmiI | GGNNCC | 9 cut(s) | 181, 778, 899, 985, 1638, 2170, 2171, 2731, 3332 |
| BmrFI | CCNGG | 4 cut(s) | 987, 1518, 1822, 3090 |
| BmsI | GCATC | 8 cut(s) | 694, 1072, 1345, 1446, 1647, 1720, 2556, 3502 |
| BpiI | GAAGAC | 4 cut(s) | 600, 1322, 2828, 3192 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 2561, 2593 |
| BpmI | CTGGAG | 3 cut(s) | 179, 987, 1843 |
| Bpu10I | CCTNAGC | 2 cut(s) | 2297, 3156 |
| Bpu14I | TTCGAA | 1 cut(s) | 735 |
| BpuEI | CTTGAG | 5 cut(s) | 1626, 1736, 2375, 2894, 3263 |
| BpuMI | CCSGG | 2 cut(s) | 987, 3090 |
| BsaAI | YACGTR | 1 cut(s) | 3355 |
| BsaI | GGTCTC | 2 cut(s) | 2133, 2735 |
| BsaJI | CCNNGG | 6 cut(s) | 985, 1820, 2195, 2650, 3496, 3620 |
| BsaWI | WCCGGW | 1 cut(s) | 1390 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 159, 189, 2734, 2764 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 1397, 1477, 3580 |
| Bse1I | ACTGG | 6 cut(s) | 162, 288, 580, 1025, 2822, 3167 |
| Bse3DI | GCAATG | 2 cut(s) | 2705, 2994 |
| BseAI | TCCGGA | 1 cut(s) | 1390 |
| BseBI | CCWGG | 2 cut(s) | 1518, 1822 |
| BseDI | CCNNGG | 6 cut(s) | 985, 1820, 2195, 2650, 3496, 3620 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 1397, 1477, 3580 |
| BseMI | GCAATG | 2 cut(s) | 2705, 2994 |
| BseMII | CTCAG | 4 cut(s) | 2288, 2777, 3170, 3402 |
| BseNI | ACTGG | 6 cut(s) | 162, 288, 580, 1025, 2822, 3167 |
| BseRI | GAGGAG | 1 cut(s) | 180 |
| BseSI | GKGCMC | 3 cut(s) | 2173, 2256, 2867 |
| BseX3I | CGGCCG | 1 cut(s) | 3623 |
| BseXI | GCAGC | 6 cut(s) | 100, 467, 1072, 1129, 1360, 2645 |
| BsgI | GTGCAG | 2 cut(s) | 2503, 3330 |
| Bsh1236I | CGCG | 4 cut(s) | 77, 1497, 3570, 3622 |
| Bsh1285I | CGRYCG | 1 cut(s) | 3626 |
| BshFI | GGCC | 9 cut(s) | 428, 984, 1854, 2171, 3333, 3495, 3501, 3573, 3625 |
| BshNI | GGYRCC | 1 cut(s) | 776 |
| BsiEI | CGRYCG | 1 cut(s) | 3626 |
| BsiHKAI | GWGCWC | 5 cut(s) | 1812, 2633, 2829, 2867, 3318 |
| BsiHKCI | CYCGRG | 2 cut(s) | 1011, 2567 |
| BsiSI | CCGG | 3 cut(s) | 987, 1391, 3089 |
| BslFI | GGGAC | 2 cut(s) | 1895, 2461 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 1397, 1477, 3580 |
| BsmBI | CGTCTC | 1 cut(s) | 407 |
| BsmFI | GGGAC | 2 cut(s) | 1895, 2461 |
| BsmI | GAATGC | 1 cut(s) | 293 |
| BsnI | GGCC | 9 cut(s) | 428, 984, 1854, 2171, 3333, 3495, 3501, 3573, 3625 |
| Bso31I | GGTCTC | 2 cut(s) | 2133, 2735 |
| BsoBI | CYCGRG | 2 cut(s) | 1011, 2567 |
| Bsp119I | TTCGAA | 1 cut(s) | 735 |
| Bsp120I | GGGCCC | 1 cut(s) | 2169 |
| Bsp1286I | GDGCHC | 7 cut(s) | 1812, 2173, 2256, 2633, 2829, 2867, 3318 |
| Bsp13I | TCCGGA | 1 cut(s) | 1390 |
| Bsp1407I | TGTACA | 1 cut(s) | 1097 |
| Bsp19I | CCATGG | 1 cut(s) | 2195 |
| BspANI | GGCC | 9 cut(s) | 428, 984, 1854, 2171, 3333, 3495, 3501, 3573, 3625 |
| BspCNI | CTCAG | 4 cut(s) | 2289, 2778, 3169, 3401 |
| BspEI | TCCGGA | 1 cut(s) | 1390 |
| BspFNI | CGCG | 4 cut(s) | 77, 1497, 3570, 3622 |
| BspLI | GGNNCC | 9 cut(s) | 181, 778, 899, 985, 1638, 2170, 2171, 2731, 3332 |
| BspMAI | CTGCAG | 1 cut(s) | 1147 |
| BspMI | ACCTGC | 3 cut(s) | 764, 1117, 2701 |
| BspPI | GGATC | 6 cut(s) | 332, 1462, 1508, 1631, 1644, 3139 |
| BspQI | GCTCTTC | 1 cut(s) | 2454 |
| BspT104I | TTCGAA | 1 cut(s) | 735 |
| BspT107I | GGYRCC | 1 cut(s) | 776 |
| BspTI | CTTAAG | 2 cut(s) | 1666, 2777 |
| BspTNI | GGTCTC | 2 cut(s) | 2133, 2735 |
| BsrDI | GCAATG | 2 cut(s) | 2705, 2994 |
| BsrGI | TGTACA | 1 cut(s) | 1097 |
| BsrI | ACTGG | 6 cut(s) | 162, 288, 580, 1025, 2822, 3167 |
| BssECI | CCNNGG | 6 cut(s) | 985, 1820, 2195, 2650, 3496, 3620 |
| BssSI | CACGAG | 2 cut(s) | 1676, 2866 |
| BssT1I | CCWWGG | 2 cut(s) | 2195, 3496 |
| Bst2BI | CACGAG | 2 cut(s) | 1676, 2866 |
| Bst2UI | CCWGG | 2 cut(s) | 1518, 1822 |
| Bst6I | CTCTTC | 6 cut(s) | 16, 730, 1076, 1829, 2454, 2930 |
| BstAFI | CTTAAG | 2 cut(s) | 1666, 2777 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 1139, 3218 |
| BstAUI | TGTACA | 1 cut(s) | 1097 |
| BstBAI | YACGTR | 1 cut(s) | 3355 |
| BstBI | TTCGAA | 1 cut(s) | 735 |
| BstC8I | GCNNGC | 3 cut(s) | 699, 2804, 2965 |
| BstDEI | CTNAG | 7 cut(s) | 1682, 2297, 2582, 2723, 2786, 3156, 3388 |
| BstDSI | CCRYGG | 2 cut(s) | 2195, 3620 |
| BstEII | GGTNACC | 1 cut(s) | 2309 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 3578 |
| BstFNI | CGCG | 4 cut(s) | 77, 1497, 3570, 3622 |
| BstHHI | GCGC | 2 cut(s) | 77, 1527 |
| BstMCI | CGRYCG | 1 cut(s) | 3626 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 251, 1139, 1605, 1816, 2694, 3157, 3218 |
| BstNI | CCWGG | 2 cut(s) | 1518, 1822 |
| BstNSI | RCATGY | 4 cut(s) | 314, 350, 1329, 3045 |
| BstPI | GGTNACC | 1 cut(s) | 2309 |
| BstSCI | CCNGG | 4 cut(s) | 985, 1516, 1820, 3088 |
| BstSFI | CTRYAG | 5 cut(s) | 657, 873, 1143, 2380, 3289 |
| BstSLI | GKGCMC | 3 cut(s) | 2173, 2256, 2867 |
| BstUI | CGCG | 4 cut(s) | 77, 1497, 3570, 3622 |
| BstV1I | GCAGC | 6 cut(s) | 100, 467, 1072, 1129, 1360, 2645 |
| BstV2I | GAAGAC | 4 cut(s) | 600, 1322, 2828, 3192 |
| BstX2I | RGATCY | 4 cut(s) | 337, 1513, 1636, 3131 |
| BstYI | RGATCY | 4 cut(s) | 337, 1513, 1636, 3131 |
| BstZI | CGGCCG | 1 cut(s) | 3623 |
| BsuRI | GGCC | 9 cut(s) | 428, 984, 1854, 2171, 3333, 3495, 3501, 3573, 3625 |
| BtgI | CCRYGG | 2 cut(s) | 2195, 3620 |
| BtgZI | GCGATG | 1 cut(s) | 3551 |
| BtrI | CACGTC | 1 cut(s) | 934 |
| BtsIMutI | CAGTG | 5 cut(s) | 742, 2256, 2829, 2898, 3160 |
| BveI | ACCTGC | 3 cut(s) | 764, 1117, 2701 |
| Cac8I | GCNNGC | 3 cut(s) | 699, 2804, 2965 |
| CaiI | CAGNNNCTG | 2 cut(s) | 1085, 2897 |
| CciNI | GCGGCCGC | 1 cut(s) | 3623 |
| CfoI | GCGC | 2 cut(s) | 77, 1527 |
| Cfr13I | GGNCC | 5 cut(s) | 179, 983, 2169, 2170, 3331 |
| Cfr42I | CCGCGG | 1 cut(s) | 3623 |
| CseI | GACGC | 1 cut(s) | 3017 |
| Csp6I | GTAC | 7 cut(s) | 350, 777, 906, 1098, 1506, 3189, 3594 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 2052, 2087 |
| CviQI | GTAC | 7 cut(s) | 350, 777, 906, 1098, 1506, 3189, 3594 |
| DdeI | CTNAG | 7 cut(s) | 1682, 2297, 2582, 2723, 2786, 3156, 3388 |
| DraI | TTTAAA | 1 cut(s) | 2559 |
| DraIII | CACNNNGTG | 2 cut(s) | 1465, 2585 |
| EaeI | YGGCCR | 3 cut(s) | 426, 3493, 3623 |
| EagI | CGGCCG | 1 cut(s) | 3623 |
| Eam1104I | CTCTTC | 6 cut(s) | 16, 730, 1076, 1829, 2454, 2930 |
| EarI | CTCTTC | 6 cut(s) | 16, 730, 1076, 1829, 2454, 2930 |
| EciI | GGCGGA | 1 cut(s) | 890 |
| Ecl136II | GAGCTC | 1 cut(s) | 1810 |
| EclXI | CGGCCG | 1 cut(s) | 3623 |
| Eco130I | CCWWGG | 2 cut(s) | 2195, 3496 |
| Eco24I | GRGCYC | 2 cut(s) | 1812, 2173 |
| Eco31I | GGTCTC | 2 cut(s) | 2133, 2735 |
| Eco47I | GGWCC | 1 cut(s) | 179 |
| Eco52I | CGGCCG | 1 cut(s) | 3623 |
| Eco53kI | GAGCTC | 1 cut(s) | 1810 |
| Eco57I | CTGAAG | 5 cut(s) | 612, 1241, 1530, 1853, 3001 |
| Eco72I | CACGTG | 1 cut(s) | 3355 |
| Eco88I | CYCGRG | 2 cut(s) | 1011, 2567 |
| Eco91I | GGTNACC | 1 cut(s) | 2309 |
| EcoICRI | GAGCTC | 1 cut(s) | 1810 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 3578 |
| EcoO109I | RGGNCCY | 2 cut(s) | 2169, 3331 |
| EcoO65I | GGTNACC | 1 cut(s) | 2309 |
| EcoRI | GAATTC | 2 cut(s) | 1149, 2075 |
| EcoRII | CCWGG | 2 cut(s) | 1516, 1820 |
| EcoT14I | CCWWGG | 2 cut(s) | 2195, 3496 |
| EcoT22I | ATGCAT | 1 cut(s) | 1662 |
| EcoT38I | GRGCYC | 2 cut(s) | 1812, 2173 |
| ErhI | CCWWGG | 2 cut(s) | 2195, 3496 |
| Esp3I | CGTCTC | 1 cut(s) | 407 |
| FaqI | GGGAC | 2 cut(s) | 1895, 2461 |
| FauI | CCCGC | 1 cut(s) | 190 |
| FauNDI | CATATG | 2 cut(s) | 1451, 1815 |
| FriOI | GRGCYC | 2 cut(s) | 1812, 2173 |
| FspBI | CTAG | 7 cut(s) | 839, 1043, 2694, 2840, 3558, 3591, 3597 |
| GlaI | GCGC | 2 cut(s) | 76, 1526 |
| GsuI | CTGGAG | 3 cut(s) | 179, 987, 1843 |
| HaeIII | GGCC | 9 cut(s) | 428, 984, 1854, 2171, 3333, 3495, 3501, 3573, 3625 |
| HapII | CCGG | 3 cut(s) | 987, 1391, 3089 |
| HgaI | GACGC | 1 cut(s) | 3017 |
| HhaI | GCGC | 2 cut(s) | 77, 1527 |
| Hin6I | GCGC | 2 cut(s) | 75, 1525 |
| HinP1I | GCGC | 2 cut(s) | 75, 1525 |
| HincII | GTYRAC | 2 cut(s) | 886, 1621 |
| HindII | GTYRAC | 2 cut(s) | 886, 1621 |
| HindIII | AAGCTT | 4 cut(s) | 441, 1644, 2006, 3149 |
| HpaI | GTTAAC | 1 cut(s) | 1621 |
| HpaII | CCGG | 3 cut(s) | 987, 1391, 3089 |
| HphI | GGTGA | 2 cut(s) | 1556, 3293 |
| Hpy166II | GTNNAC | 6 cut(s) | 886, 1621, 2865, 3047, 3449, 3539 |
| Hpy8I | GTNNAC | 6 cut(s) | 886, 1621, 2865, 3047, 3449, 3539 |
| Hpy99I | CGWCG | 1 cut(s) | 935 |
| HpyAV | CCTTC | 8 cut(s) | 151, 400, 430, 1196, 1332, 1745, 2124, 2789 |
| HpyCH4IV | ACGT | 7 cut(s) | 933, 1631, 2422, 3055, 3077, 3354, 3462 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 251, 1139, 1605, 1816, 2694, 3157, 3218 |
| HpyF3I | CTNAG | 7 cut(s) | 1682, 2297, 2582, 2723, 2786, 3156, 3388 |
| HpySE526I | ACGT | 7 cut(s) | 933, 1631, 2422, 3055, 3077, 3354, 3462 |
| HspAI | GCGC | 2 cut(s) | 75, 1525 |
| Kpn2I | TCCGGA | 1 cut(s) | 1390 |
| KpnI | GGTACC | 1 cut(s) | 780 |
| KspAI | GTTAAC | 1 cut(s) | 1621 |
| KspI | CCGCGG | 1 cut(s) | 3623 |
| LguI | GCTCTTC | 1 cut(s) | 2454 |
| LmnI | GCTCC | 6 cut(s) | 39, 587, 903, 1815, 1824, 2832 |
| Lsp1109I | GCAGC | 6 cut(s) | 100, 467, 1072, 1129, 1360, 2645 |
| LweI | GCATC | 8 cut(s) | 694, 1072, 1345, 1446, 1647, 1720, 2556, 3502 |
| MaeI | CTAG | 7 cut(s) | 839, 1043, 2694, 2840, 3558, 3591, 3597 |
| MaeII | ACGT | 7 cut(s) | 933, 1631, 2422, 3055, 3077, 3354, 3462 |
| MaeIII | GTNAC | 5 cut(s) | 1757, 2309, 2591, 2893, 3073 |
| MflI | RGATCY | 4 cut(s) | 337, 1513, 1636, 3131 |
| MhlI | GDGCHC | 7 cut(s) | 1812, 2173, 2256, 2633, 2829, 2867, 3318 |
| MlsI | TGGCCA | 2 cut(s) | 428, 3495 |
| MluNI | TGGCCA | 2 cut(s) | 428, 3495 |
| MlyI | GAGTC | 3 cut(s) | 714, 1867, 2329 |
| MmeI | TCCRAC | 2 cut(s) | 157, 1614 |
| Mox20I | TGGCCA | 2 cut(s) | 428, 3495 |
| Mph1103I | ATGCAT | 1 cut(s) | 1662 |
| MroI | TCCGGA | 1 cut(s) | 1390 |
| MroXI | GAANNNNTTC | 2 cut(s) | 642, 2676 |
| MscI | TGGCCA | 2 cut(s) | 428, 3495 |
| MslI | CAYNNNNRTG | 5 cut(s) | 108, 1080, 1418, 1454, 1542 |
| Msp20I | TGGCCA | 2 cut(s) | 428, 3495 |
| MspA1I | CMGCKG | 1 cut(s) | 3622 |
| MspCI | CTTAAG | 2 cut(s) | 1666, 2777 |
| MspI | CCGG | 3 cut(s) | 987, 1391, 3089 |
| MspR9I | CCNGG | 4 cut(s) | 987, 1518, 1822, 3090 |
| Mva1269I | GAATGC | 1 cut(s) | 293 |
| MvaI | CCWGG | 2 cut(s) | 1518, 1822 |
| MvnI | CGCG | 4 cut(s) | 77, 1497, 3570, 3622 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 251, 1139, 1605, 1816, 2694, 3157, 3218 |
| NciI | CCSGG | 2 cut(s) | 987, 3090 |
| NcoI | CCATGG | 1 cut(s) | 2195 |
| NdeI | CATATG | 2 cut(s) | 1451, 1815 |
| NlaIV | GGNNCC | 9 cut(s) | 181, 778, 899, 985, 1638, 2170, 2171, 2731, 3332 |
| NmuCI | GTSAC | 1 cut(s) | 2893 |
| NotI | GCGGCCGC | 1 cut(s) | 3623 |
| NsiI | ATGCAT | 1 cut(s) | 1662 |
| NspI | RCATGY | 4 cut(s) | 314, 350, 1329, 3045 |
| NspV | TTCGAA | 1 cut(s) | 735 |
| OliI | CACNNNNGTG | 1 cut(s) | 1542 |
| PaeR7I | CTCGAG | 2 cut(s) | 1011, 2567 |
| PaqCI | CACCTGC | 1 cut(s) | 1117 |
| PciI | ACATGT | 2 cut(s) | 310, 346 |
| PciSI | GCTCTTC | 1 cut(s) | 2454 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 2183 |
| PctI | GAATGC | 1 cut(s) | 293 |
| PdmI | GAANNNNTTC | 2 cut(s) | 642, 2676 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1477 |
| PfoI | TCCNGGA | 2 cut(s) | 1516, 3088 |
| PleI | GAGTC | 3 cut(s) | 714, 1866, 2328 |
| PmaCI | CACGTG | 1 cut(s) | 3355 |
| PmlI | CACGTG | 1 cut(s) | 3355 |
| PpsI | GAGTC | 3 cut(s) | 714, 1866, 2328 |
| Ppu21I | YACGTR | 1 cut(s) | 3355 |
| PscI | ACATGT | 2 cut(s) | 310, 346 |
| PsiI | TTATAA | 2 cut(s) | 372, 1004 |
| Psp124BI | GAGCTC | 1 cut(s) | 1812 |
| Psp1406I | AACGTT | 3 cut(s) | 1631, 3055, 3077 |
| Psp6I | CCWGG | 2 cut(s) | 1516, 1820 |
| PspCI | CACGTG | 1 cut(s) | 3355 |
| PspEI | GGTNACC | 1 cut(s) | 2309 |
| PspGI | CCWGG | 2 cut(s) | 1516, 1820 |
| PspN4I | GGNNCC | 9 cut(s) | 181, 778, 899, 985, 1638, 2170, 2171, 2731, 3332 |
| PspOMI | GGGCCC | 1 cut(s) | 2169 |
| PspPI | GGNCC | 5 cut(s) | 179, 983, 2169, 2170, 3331 |
| PstI | CTGCAG | 1 cut(s) | 1147 |
| PstNI | CAGNNNCTG | 2 cut(s) | 1085, 2897 |
| PsuI | RGATCY | 4 cut(s) | 337, 1513, 1636, 3131 |
| RsaI | GTAC | 7 cut(s) | 351, 778, 907, 1099, 1507, 3190, 3595 |
| RsaNI | GTAC | 7 cut(s) | 350, 777, 906, 1098, 1506, 3189, 3594 |
| RseI | CAYNNNNRTG | 5 cut(s) | 108, 1080, 1418, 1454, 1542 |
| SacI | GAGCTC | 1 cut(s) | 1812 |
| SacII | CCGCGG | 1 cut(s) | 3623 |
| SapI | GCTCTTC | 1 cut(s) | 2454 |
| Sau96I | GGNCC | 5 cut(s) | 179, 983, 2169, 2170, 3331 |
| ScaI | AGTACT | 2 cut(s) | 1507, 3595 |
| SchI | GAGTC | 3 cut(s) | 714, 1867, 2329 |
| ScrFI | CCNGG | 4 cut(s) | 987, 1518, 1822, 3090 |
| SduI | GDGCHC | 7 cut(s) | 1812, 2173, 2256, 2633, 2829, 2867, 3318 |
| SfaNI | GCATC | 8 cut(s) | 694, 1072, 1345, 1446, 1647, 1720, 2556, 3502 |
| SfcI | CTRYAG | 5 cut(s) | 657, 873, 1143, 2380, 3289 |
| Sfr274I | CTCGAG | 2 cut(s) | 1011, 2567 |
| Sfr303I | CCGCGG | 1 cut(s) | 3623 |
| SfuI | TTCGAA | 1 cut(s) | 735 |
| SgrBI | CCGCGG | 1 cut(s) | 3623 |
| SinI | GGWCC | 1 cut(s) | 179 |
| SlaI | CTCGAG | 2 cut(s) | 1011, 2567 |
| SmiMI | CAYNNNNRTG | 5 cut(s) | 108, 1080, 1418, 1454, 1542 |
| SmlI | CTYRAG | 9 cut(s) | 1011, 1641, 1666, 1715, 2354, 2567, 2777, 2873, 3242 |
| SmoI | CTYRAG | 9 cut(s) | 1011, 1641, 1666, 1715, 2354, 2567, 2777, 2873, 3242 |
| SpeI | ACTAGT | 3 cut(s) | 1042, 3590, 3596 |
| SspI | AATATT | 3 cut(s) | 1772, 1936, 3145 |
| SspMI | CTAG | 7 cut(s) | 839, 1043, 2694, 2840, 3558, 3591, 3597 |
| SstI | GAGCTC | 1 cut(s) | 1812 |
| StyD4I | CCNGG | 4 cut(s) | 985, 1516, 1820, 3088 |
| StyI | CCWWGG | 2 cut(s) | 2195, 3496 |
| TaiI | ACGT | 7 cut(s) | 936, 1634, 2425, 3058, 3080, 3357, 3465 |
| TaqII | GACCGA | 1 cut(s) | 377 |
| TatI | WGTACW | 3 cut(s) | 1097, 1505, 3593 |
| TauI | GCSGC | 4 cut(s) | 2809, 3573, 3625, 3628 |
| TscAI | CASTG | 5 cut(s) | 749, 2256, 2829, 2898, 3167 |
| TseFI | GTSAC | 1 cut(s) | 2893 |
| TseI | GCWGC | 6 cut(s) | 113, 455, 1085, 1142, 1373, 2658 |
| Tsp45I | GTSAC | 1 cut(s) | 2893 |
| TspGWI | ACGGA | 7 cut(s) | 139, 208, 431, 1669, 1974, 3017, 3140 |
| TspRI | CASTG | 5 cut(s) | 749, 2256, 2829, 2898, 3167 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1477 |
| Vha464I | CTTAAG | 2 cut(s) | 1666, 2777 |
| VneI | GTGCAC | 1 cut(s) | 2863 |
| VpaK11BI | GGWCC | 1 cut(s) | 179 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 3578 |
| XapI | RAATTY | 9 cut(s) | 609, 1149, 1996, 2020, 2075, 2207, 2403, 2676, 3521 |
| XbaI | TCTAGA | 1 cut(s) | 2839 |
| XceI | RCATGY | 4 cut(s) | 314, 350, 1329, 3045 |
| XhoI | CTCGAG | 2 cut(s) | 1011, 2567 |
| XmnI | GAANNNNTTC | 2 cut(s) | 642, 2676 |
| XspI | CTAG | 7 cut(s) | 839, 1043, 2694, 2840, 3558, 3591, 3597 |
| ZrmI | AGTACT | 2 cut(s) | 1507, 3595 |
| Zsp2I | ATGCAT | 1 cut(s) | 1662 |