Disease resistance protein (TIR-NBS-LRR class)
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| TIR | PF01582 | 145 - 321 | 3.9e-55 | TIR domain |
| TIR_2 | PF13676 | 147 - 243 | 1.3e-12 | TIR domain |
| NB-ARC | PF00931 | 343 - 501 | 4.1e-17 | NB-ARC domain |
| WHD_ROQ1 | PF23282 | 571 - 646 | 4.4e-17 | Disease resistance protein Roq1-like, winged-helix domain |
| LRR_14 | PF23598 | 815 - 894 | 6.5e-08 | Leucine-rich repeat region |
| LRR_14 | PF23598 | 885 - 965 | 5.1e-06 | Leucine-rich repeat region |
| LRR_13 | PF23286 | 933 - 1117 | 1.6e-16 | Disease resistance protein RPS4B-like, leucine-rich repeats |
| C-JID | PF20160 | 1198 - 1340 | 1.1e-14 | C-JID domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1370 |
| AarI | CACCTGC | 1 cut(s) | 574 |
| Acc36I | ACCTGC | 2 cut(s) | 574, 773 |
| AccBSI | CCGCTC | 1 cut(s) | 1523 |
| AccII | CGCG | 1 cut(s) | 104 |
| AccIII | TCCGGA | 1 cut(s) | 573 |
| AclI | AACGTT | 1 cut(s) | 1244 |
| AclWI | GGATC | 8 cut(s) | 246, 933, 1246, 1370, 2892, 3556, 3633, 3646 |
| AcuI | CTGAAG | 7 cut(s) | 515, 1463, 1965, 2226, 2824, 3564, 3939 |
| AdeI | CACNNNGTG | 1 cut(s) | 328 |
| AfaI | GTAC | 4 cut(s) | 1410, 2418, 3811, 3942 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 1235, 1759, 3165 |
| AflIII | ACRYGT | 2 cut(s) | 730, 1015 |
| AhlI | ACTAGT | 1 cut(s) | 886 |
| AjnI | CCWGG | 7 cut(s) | 1351, 1951, 2407, 2877, 2979, 3452, 3595 |
| AjuI | GAANNNNNNNTTGG | 6 cut(s) | 1311, 1343, 2224, 2256, 2925, 2957 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 1323, 1355 |
| Alw21I | GWGCWC | 4 cut(s) | 335, 810, 2067, 3285 |
| Alw26I | GTCTC | 9 cut(s) | 39, 1848, 2175, 2334, 2780, 2806, 2991, 3326, 3527 |
| AlwI | GGATC | 8 cut(s) | 246, 933, 1246, 1370, 2892, 3556, 3633, 3646 |
| Aor13HI | TCCGGA | 1 cut(s) | 573 |
| AoxI | GGCC | 4 cut(s) | 153, 1348, 2201, 3229 |
| ApeKI | GCWGC | 5 cut(s) | 836, 1387, 1562, 2350, 3318 |
| Asp700I | GAANNNNTTC | 6 cut(s) | 1185, 1476, 2025, 2451, 2503, 3132 |
| AspA2I | CCTAGG | 1 cut(s) | 2312 |
| AspLEI | GCGC | 3 cut(s) | 2130, 2157, 3806 |
| AspS9I | GGNCC | 1 cut(s) | 1349 |
| AsuHPI | GGTGA | 6 cut(s) | 395, 470, 514, 999, 3791, 3851 |
| AsuII | TTCGAA | 2 cut(s) | 1027, 1110 |
| AvrII | CCTAGG | 1 cut(s) | 2312 |
| AxyI | CCTNAGG | 2 cut(s) | 2114, 3233 |
| BamHI | GGATCC | 1 cut(s) | 3638 |
| BanII | GRGCYC | 3 cut(s) | 205, 2067, 3285 |
| BauI | CACGAG | 1 cut(s) | 1266 |
| BbsI | GAAGAC | 1 cut(s) | 3078 |
| Bbv12I | GWGCWC | 4 cut(s) | 335, 810, 2067, 3285 |
| BbvI | GCAGC | 5 cut(s) | 848, 1399, 1549, 2362, 3305 |
| BccI | CCATC | 7 cut(s) | 190, 380, 495, 500, 790, 3029, 3795 |
| BceAI | ACGGC | 1 cut(s) | 3513 |
| BciT130I | CCWGG | 7 cut(s) | 1353, 1953, 2409, 2879, 2981, 3454, 3597 |
| BciVI | GTATCC | 1 cut(s) | 457 |
| BclI | TGATCA | 1 cut(s) | 3841 |
| BcoDI | GTCTC | 9 cut(s) | 39, 1848, 2175, 2334, 2780, 2806, 2991, 3326, 3527 |
| BcuI | ACTAGT | 1 cut(s) | 886 |
| BfmI | CTRYAG | 4 cut(s) | 1530, 1563, 2550, 3988 |
| BfoI | RGCGCY | 1 cut(s) | 2131 |
| BfuAI | ACCTGC | 2 cut(s) | 574, 773 |
| BfuI | GTATCC | 1 cut(s) | 457 |
| BglII | AGATCT | 2 cut(s) | 2368, 2401 |
| BisI | GCNGC | 7 cut(s) | 105, 169, 837, 1388, 1563, 2351, 3319 |
| BlnI | CCTAGG | 1 cut(s) | 2312 |
| BlpI | GCTNAGC | 1 cut(s) | 365 |
| BlsI | GCNGC | 7 cut(s) | 106, 170, 838, 1389, 1564, 2352, 3320 |
| BmcAI | AGTACT | 1 cut(s) | 1410 |
| Bme1390I | CCNGG | 7 cut(s) | 1353, 1953, 2409, 2879, 2981, 3454, 3597 |
| BmgT120I | GGNCC | 1 cut(s) | 1349 |
| BmiI | GGNNCC | 6 cut(s) | 111, 1597, 1976, 2865, 3239, 3640 |
| BmrFI | CCNGG | 7 cut(s) | 1353, 1953, 2409, 2879, 2981, 3454, 3597 |
| BmrI | ACTGGG | 1 cut(s) | 149 |
| BmuI | ACTGGG | 1 cut(s) | 149 |
| BpiI | GAAGAC | 1 cut(s) | 3078 |
| BplI | GAGNNNNNCTC | 8 cut(s) | 1249, 1281, 2803, 2835, 3190, 3222, 3554, 3586 |
| BpmI | CTGGAG | 4 cut(s) | 2900, 3002, 3187, 3350 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 365 |
| Bpu14I | TTCGAA | 2 cut(s) | 1027, 1110 |
| BpuEI | CTTGAG | 6 cut(s) | 794, 922, 2000, 2092, 2828, 3512 |
| BsaAI | YACGTR | 1 cut(s) | 3095 |
| BsaBI | GATNNNNATC | 1 cut(s) | 253 |
| BsaJI | CCNNGG | 5 cut(s) | 370, 638, 1351, 2312, 3596 |
| BsaWI | WCCGGW | 1 cut(s) | 573 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 555, 585, 3267, 3297, 3323, 3353 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 1235, 1759, 3165 |
| Bse1I | ACTGG | 3 cut(s) | 144, 298, 672 |
| Bse21I | CCTNAGG | 2 cut(s) | 2114, 3233 |
| Bse3DI | GCAATG | 3 cut(s) | 198, 2155, 2482 |
| Bse8I | GATNNNNATC | 1 cut(s) | 253 |
| BseAI | TCCGGA | 1 cut(s) | 573 |
| BseBI | CCWGG | 7 cut(s) | 1353, 1953, 2409, 2879, 2981, 3454, 3597 |
| BseDI | CCNNGG | 5 cut(s) | 370, 638, 1351, 2312, 3596 |
| BseGI | GGATG | 8 cut(s) | 655, 1896, 1990, 2834, 3044, 3379, 3448, 3475 |
| BseJI | GATNNNNATC | 1 cut(s) | 253 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 1235, 1759, 3165 |
| BseMI | GCAATG | 3 cut(s) | 198, 2155, 2482 |
| BseMII | CTCAG | 2 cut(s) | 2491, 3224 |
| BseNI | ACTGG | 3 cut(s) | 144, 298, 672 |
| BseRI | GAGGAG | 5 cut(s) | 238, 421, 1775, 2089, 3515 |
| BseXI | GCAGC | 5 cut(s) | 848, 1399, 1549, 2362, 3305 |
| BseYI | CCCAGC | 1 cut(s) | 1917 |
| BsgI | GTGCAG | 3 cut(s) | 1472, 3339, 3989 |
| Bsh1236I | CGCG | 1 cut(s) | 104 |
| Bsh1285I | CGRYCG | 1 cut(s) | 102 |
| BshFI | GGCC | 4 cut(s) | 155, 1350, 2203, 3231 |
| BsiEI | CGRYCG | 1 cut(s) | 102 |
| BsiHKAI | GWGCWC | 4 cut(s) | 335, 810, 2067, 3285 |
| BsiSI | CCGG | 1 cut(s) | 574 |
| BslFI | GGGAC | 1 cut(s) | 2701 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 1235, 1759, 3165 |
| BsmAI | GTCTC | 9 cut(s) | 39, 1848, 2175, 2334, 2780, 2806, 2991, 3326, 3527 |
| BsmFI | GGGAC | 1 cut(s) | 2701 |
| BsmI | GAATGC | 5 cut(s) | 677, 975, 1501, 1569, 3454 |
| BsnI | GGCC | 4 cut(s) | 155, 1350, 2203, 3231 |
| Bsp119I | TTCGAA | 2 cut(s) | 1027, 1110 |
| Bsp1286I | GDGCHC | 5 cut(s) | 205, 335, 810, 2067, 3285 |
| Bsp13I | TCCGGA | 1 cut(s) | 573 |
| Bsp1407I | TGTACA | 1 cut(s) | 3940 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 365 |
| Bsp19I | CCATGG | 2 cut(s) | 370, 638 |
| BspANI | GGCC | 4 cut(s) | 155, 1350, 2203, 3231 |
| BspCNI | CTCAG | 2 cut(s) | 2490, 3225 |
| BspEI | TCCGGA | 1 cut(s) | 573 |
| BspFNI | CGCG | 1 cut(s) | 104 |
| BspHI | TCATGA | 2 cut(s) | 3406, 3676 |
| BspLI | GGNNCC | 6 cut(s) | 111, 1597, 1976, 2865, 3239, 3640 |
| BspMAI | CTGCAG | 3 cut(s) | 1534, 1567, 2554 |
| BspMI | ACCTGC | 2 cut(s) | 574, 773 |
| BspPI | GGATC | 8 cut(s) | 246, 933, 1246, 1370, 2892, 3556, 3633, 3646 |
| BspT104I | TTCGAA | 2 cut(s) | 1027, 1110 |
| BsrBI | CCGCTC | 1 cut(s) | 1523 |
| BsrDI | GCAATG | 3 cut(s) | 198, 2155, 2482 |
| BsrGI | TGTACA | 1 cut(s) | 3940 |
| BsrI | ACTGG | 3 cut(s) | 144, 298, 672 |
| BssECI | CCNNGG | 5 cut(s) | 370, 638, 1351, 2312, 3596 |
| BssSI | CACGAG | 1 cut(s) | 1266 |
| BssT1I | CCWWGG | 3 cut(s) | 370, 638, 2312 |
| Bst2BI | CACGAG | 1 cut(s) | 1266 |
| Bst2UI | CCWGG | 7 cut(s) | 1353, 1953, 2409, 2879, 2981, 3454, 3597 |
| Bst4CI | ACNGT | 7 cut(s) | 693, 1033, 2723, 3337, 3772, 3800, 3989 |
| Bst6I | CTCTTC | 5 cut(s) | 398, 422, 1105, 2178, 2553 |
| BstAUI | TGTACA | 1 cut(s) | 3940 |
| BstBAI | YACGTR | 1 cut(s) | 3095 |
| BstBI | TTCGAA | 2 cut(s) | 1027, 1110 |
| BstC8I | GCNNGC | 8 cut(s) | 362, 1567, 1622, 2201, 2205, 2463, 3957, 4016 |
| BstDSI | CCRYGG | 2 cut(s) | 370, 638 |
| BstF5I | GGATG | 8 cut(s) | 655, 1896, 1990, 2834, 3044, 3379, 3448, 3475 |
| BstFNI | CGCG | 1 cut(s) | 104 |
| BstH2I | RGCGCY | 1 cut(s) | 2131 |
| BstHHI | GCGC | 3 cut(s) | 2130, 2157, 3806 |
| BstMAI | GTCTC | 9 cut(s) | 39, 1848, 2175, 2334, 2780, 2806, 2991, 3326, 3527 |
| BstMCI | CGRYCG | 1 cut(s) | 102 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 366, 1529, 2154, 3150, 3707, 3920, 3990 |
| BstNI | CCWGG | 7 cut(s) | 1353, 1953, 2409, 2879, 2981, 3454, 3597 |
| BstNSI | RCATGY | 4 cut(s) | 734, 1019, 1749, 3959 |
| BstSCI | CCNGG | 7 cut(s) | 1351, 1951, 2407, 2877, 2979, 3452, 3595 |
| BstSFI | CTRYAG | 4 cut(s) | 1530, 1563, 2550, 3988 |
| BstUI | CGCG | 1 cut(s) | 104 |
| BstV1I | GCAGC | 5 cut(s) | 848, 1399, 1549, 2362, 3305 |
| BstV2I | GAAGAC | 1 cut(s) | 3078 |
| BstX2I | RGATCY | 5 cut(s) | 238, 2368, 2401, 2884, 3638 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 2353 |
| BstYI | RGATCY | 5 cut(s) | 238, 2368, 2401, 2884, 3638 |
| Bsu36I | CCTNAGG | 2 cut(s) | 2114, 3233 |
| BsuI | GTATCC | 1 cut(s) | 457 |
| BsuRI | GGCC | 4 cut(s) | 155, 1350, 2203, 3231 |
| BtgI | CCRYGG | 2 cut(s) | 370, 638 |
| BtsCI | GGATG | 8 cut(s) | 655, 1896, 1990, 2834, 3044, 3379, 3448, 3475 |
| BtsI | GCAGTG | 2 cut(s) | 1539, 1554 |
| BtsIMutI | CAGTG | 4 cut(s) | 1539, 1554, 3342, 3915 |
| BveI | ACCTGC | 2 cut(s) | 574, 773 |
| Cac8I | GCNNGC | 8 cut(s) | 362, 1567, 1622, 2201, 2205, 2463, 3957, 4016 |
| CciI | TCATGA | 2 cut(s) | 3406, 3676 |
| CfoI | GCGC | 3 cut(s) | 2130, 2157, 3806 |
| Cfr13I | GGNCC | 1 cut(s) | 1349 |
| CseI | GACGC | 2 cut(s) | 3213, 3317 |
| Csp6I | GTAC | 4 cut(s) | 1409, 2417, 3810, 3941 |
| CviQI | GTAC | 4 cut(s) | 1409, 2417, 3810, 3941 |
| DraI | TTTAAA | 2 cut(s) | 2217, 3012 |
| DraIII | CACNNNGTG | 1 cut(s) | 328 |
| Eam1104I | CTCTTC | 5 cut(s) | 398, 422, 1105, 2178, 2553 |
| EarI | CTCTTC | 5 cut(s) | 398, 422, 1105, 2178, 2553 |
| EciI | GGCGGA | 2 cut(s) | 122, 405 |
| Ecl136II | GAGCTC | 2 cut(s) | 2065, 3283 |
| Eco130I | CCWWGG | 3 cut(s) | 370, 638, 2312 |
| Eco24I | GRGCYC | 3 cut(s) | 205, 2067, 3285 |
| Eco32I | GATATC | 2 cut(s) | 686, 2192 |
| Eco53kI | GAGCTC | 2 cut(s) | 2065, 3283 |
| Eco57I | CTGAAG | 7 cut(s) | 515, 1463, 1965, 2226, 2824, 3564, 3939 |
| Eco81I | CCTNAGG | 2 cut(s) | 2114, 3233 |
| EcoICRI | GAGCTC | 2 cut(s) | 2065, 3283 |
| EcoRII | CCWGG | 7 cut(s) | 1351, 1951, 2407, 2877, 2979, 3452, 3595 |
| EcoRV | GATATC | 2 cut(s) | 686, 2192 |
| EcoT14I | CCWWGG | 3 cut(s) | 370, 638, 2312 |
| EcoT22I | ATGCAT | 4 cut(s) | 760, 1004, 1708, 1896 |
| EcoT38I | GRGCYC | 3 cut(s) | 205, 2067, 3285 |
| ErhI | CCWWGG | 3 cut(s) | 370, 638, 2312 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 16, 48, 586, 618 |
| FaqI | GGGAC | 1 cut(s) | 2701 |
| FauI | CCCGC | 2 cut(s) | 476, 3217 |
| FauNDI | CATATG | 1 cut(s) | 2789 |
| FbaI | TGATCA | 1 cut(s) | 3841 |
| Fnu4HI | GCNGC | 7 cut(s) | 105, 169, 837, 1388, 1563, 2351, 3319 |
| FokI | GGATG | 8 cut(s) | 662, 1903, 1997, 2841, 3051, 3386, 3455, 3482 |
| FriOI | GRGCYC | 3 cut(s) | 205, 2067, 3285 |
| Fsp4HI | GCNGC | 7 cut(s) | 105, 169, 837, 1388, 1563, 2351, 3319 |
| GlaI | GCGC | 3 cut(s) | 2129, 2156, 3805 |
| GluI | GCNGC | 7 cut(s) | 105, 169, 837, 1388, 1563, 2351, 3319 |
| GsaI | CCCAGC | 1 cut(s) | 1921 |
| GsuI | CTGGAG | 4 cut(s) | 2900, 3002, 3187, 3350 |
| HaeII | RGCGCY | 1 cut(s) | 2131 |
| HaeIII | GGCC | 4 cut(s) | 155, 1350, 2203, 3231 |
| HapII | CCGG | 1 cut(s) | 574 |
| HgaI | GACGC | 2 cut(s) | 3213, 3317 |
| HhaI | GCGC | 3 cut(s) | 2130, 2157, 3806 |
| Hin6I | GCGC | 3 cut(s) | 2128, 2155, 3804 |
| HinP1I | GCGC | 3 cut(s) | 2128, 2155, 3804 |
| HincII | GTYRAC | 2 cut(s) | 1252, 2140 |
| HindII | GTYRAC | 2 cut(s) | 1252, 2140 |
| HindIII | AAGCTT | 5 cut(s) | 1113, 1673, 2459, 2591, 3656 |
| HpaI | GTTAAC | 2 cut(s) | 1252, 2140 |
| HpaII | CCGG | 1 cut(s) | 574 |
| HphI | GGTGA | 6 cut(s) | 395, 470, 514, 999, 3791, 3851 |
| Hpy166II | GTNNAC | 8 cut(s) | 1252, 1930, 2044, 2140, 2417, 3395, 3759, 3894 |
| Hpy8I | GTNNAC | 8 cut(s) | 1252, 1930, 2044, 2140, 2417, 3395, 3759, 3894 |
| Hpy99I | CGWCG | 2 cut(s) | 317, 1611 |
| HpyCH4III | ACNGT | 7 cut(s) | 693, 1033, 2723, 3337, 3772, 3800, 3989 |
| HpyCH4IV | ACGT | 2 cut(s) | 1244, 3094 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 366, 1529, 2154, 3150, 3707, 3920, 3990 |
| HpySE526I | ACGT | 2 cut(s) | 1244, 3094 |
| HspAI | GCGC | 3 cut(s) | 2128, 2155, 3804 |
| Kpn2I | TCCGGA | 1 cut(s) | 573 |
| Ksp22I | TGATCA | 1 cut(s) | 3841 |
| KspAI | GTTAAC | 2 cut(s) | 1252, 2140 |
| LmnI | GCTCC | 8 cut(s) | 109, 188, 1421, 1520, 2863, 3288, 3456, 3562 |
| Lsp1109I | GCAGC | 5 cut(s) | 848, 1399, 1549, 2362, 3305 |
| MaeII | ACGT | 2 cut(s) | 1244, 3094 |
| MaeIII | GTNAC | 5 cut(s) | 520, 726, 788, 3339, 3715 |
| MbiI | CCGCTC | 1 cut(s) | 1523 |
| MfeI | CAATTG | 3 cut(s) | 1767, 1923, 2715 |
| MflI | RGATCY | 5 cut(s) | 238, 2368, 2401, 2884, 3638 |
| MhlI | GDGCHC | 5 cut(s) | 205, 335, 810, 2067, 3285 |
| MlyI | GAGTC | 7 cut(s) | 28, 887, 1089, 2086, 2336, 2782, 2993 |
| MmeI | TCCRAC | 2 cut(s) | 940, 1309 |
| Mph1103I | ATGCAT | 4 cut(s) | 760, 1004, 1708, 1896 |
| MroI | TCCGGA | 1 cut(s) | 573 |
| MroXI | GAANNNNTTC | 6 cut(s) | 1185, 1476, 2025, 2451, 2503, 3132 |
| MslI | CAYNNNNRTG | 5 cut(s) | 527, 997, 1494, 1838, 3960 |
| MspA1I | CMGCKG | 2 cut(s) | 2353, 3977 |
| MspI | CCGG | 1 cut(s) | 574 |
| MspR9I | CCNGG | 7 cut(s) | 1353, 1953, 2409, 2879, 2981, 3454, 3597 |
| MunI | CAATTG | 3 cut(s) | 1767, 1923, 2715 |
| Mva1269I | GAATGC | 5 cut(s) | 677, 975, 1501, 1569, 3454 |
| MvaI | CCWGG | 7 cut(s) | 1353, 1953, 2409, 2879, 2981, 3454, 3597 |
| MvnI | CGCG | 1 cut(s) | 104 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 366, 1529, 2154, 3150, 3707, 3920, 3990 |
| NcoI | CCATGG | 2 cut(s) | 370, 638 |
| NdeI | CATATG | 1 cut(s) | 2789 |
| NlaIV | GGNNCC | 6 cut(s) | 111, 1597, 1976, 2865, 3239, 3640 |
| NmuCI | GTSAC | 4 cut(s) | 520, 726, 788, 3339 |
| NsiI | ATGCAT | 4 cut(s) | 760, 1004, 1708, 1896 |
| NspI | RCATGY | 4 cut(s) | 734, 1019, 1749, 3959 |
| NspV | TTCGAA | 2 cut(s) | 1027, 1110 |
| PaeI | GCATGC | 1 cut(s) | 3959 |
| PagI | TCATGA | 2 cut(s) | 3406, 3676 |
| PaqCI | CACCTGC | 1 cut(s) | 574 |
| PciI | ACATGT | 2 cut(s) | 730, 1015 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 321 |
| PctI | GAATGC | 5 cut(s) | 677, 975, 1501, 1569, 3454 |
| PdmI | GAANNNNTTC | 6 cut(s) | 1185, 1476, 2025, 2451, 2503, 3132 |
| PflFI | GACNNNGTC | 1 cut(s) | 3337 |
| PkrI | GCNGC | 7 cut(s) | 106, 170, 838, 1389, 1564, 2352, 3320 |
| Ple19I | CGATCG | 1 cut(s) | 102 |
| PleI | GAGTC | 7 cut(s) | 27, 886, 1089, 2085, 2336, 2781, 2992 |
| PpsI | GAGTC | 7 cut(s) | 27, 886, 1089, 2085, 2336, 2781, 2992 |
| Ppu21I | YACGTR | 1 cut(s) | 3095 |
| PscI | ACATGT | 2 cut(s) | 730, 1015 |
| PsiI | TTATAA | 1 cut(s) | 1370 |
| Psp124BI | GAGCTC | 2 cut(s) | 2067, 3285 |
| Psp1406I | AACGTT | 1 cut(s) | 1244 |
| Psp6I | CCWGG | 7 cut(s) | 1351, 1951, 2407, 2877, 2979, 3452, 3595 |
| PspFI | CCCAGC | 1 cut(s) | 1917 |
| PspGI | CCWGG | 7 cut(s) | 1351, 1951, 2407, 2877, 2979, 3452, 3595 |
| PspN4I | GGNNCC | 6 cut(s) | 111, 1597, 1976, 2865, 3239, 3640 |
| PspPI | GGNCC | 1 cut(s) | 1349 |
| PstI | CTGCAG | 3 cut(s) | 1534, 1567, 2554 |
| PsuI | RGATCY | 5 cut(s) | 238, 2368, 2401, 2884, 3638 |
| PsyI | GACNNNGTC | 1 cut(s) | 3337 |
| PvuI | CGATCG | 1 cut(s) | 102 |
| PvuII | CAGCTG | 1 cut(s) | 2353 |
| RsaI | GTAC | 4 cut(s) | 1410, 2418, 3811, 3942 |
| RsaNI | GTAC | 4 cut(s) | 1409, 2417, 3810, 3941 |
| RseI | CAYNNNNRTG | 5 cut(s) | 527, 997, 1494, 1838, 3960 |
| SacI | GAGCTC | 2 cut(s) | 2067, 3285 |
| SatI | GCNGC | 7 cut(s) | 105, 169, 837, 1388, 1563, 2351, 3319 |
| Sau96I | GGNCC | 1 cut(s) | 1349 |
| ScaI | AGTACT | 1 cut(s) | 1410 |
| SchI | GAGTC | 7 cut(s) | 28, 887, 1089, 2086, 2336, 2782, 2993 |
| ScrFI | CCNGG | 7 cut(s) | 1353, 1953, 2409, 2879, 2981, 3454, 3597 |
| SduI | GDGCHC | 5 cut(s) | 205, 335, 810, 2067, 3285 |
| SfcI | CTRYAG | 4 cut(s) | 1530, 1563, 2550, 3988 |
| SfuI | TTCGAA | 2 cut(s) | 1027, 1110 |
| SmiMI | CAYNNNNRTG | 5 cut(s) | 527, 997, 1494, 1838, 3960 |
| SmlI | CTYRAG | 6 cut(s) | 809, 937, 1979, 2071, 2807, 3527 |
| SmoI | CTYRAG | 6 cut(s) | 809, 937, 1979, 2071, 2807, 3527 |
| SpeI | ACTAGT | 1 cut(s) | 886 |
| SphI | GCATGC | 1 cut(s) | 3959 |
| SspI | AATATT | 4 cut(s) | 1322, 1741, 2389, 3272 |
| SstI | GAGCTC | 2 cut(s) | 2067, 3285 |
| StyD4I | CCNGG | 7 cut(s) | 1351, 1951, 2407, 2877, 2979, 3452, 3595 |
| StyI | CCWWGG | 3 cut(s) | 370, 638, 2312 |
| TaaI | ACNGT | 7 cut(s) | 693, 1033, 2723, 3337, 3772, 3800, 3989 |
| TaiI | ACGT | 2 cut(s) | 1247, 3097 |
| TatI | WGTACW | 2 cut(s) | 1408, 3940 |
| TauI | GCSGC | 2 cut(s) | 107, 171 |
| TscAI | CASTG | 4 cut(s) | 1539, 1554, 3342, 3922 |
| TseFI | GTSAC | 4 cut(s) | 520, 726, 788, 3339 |
| TseI | GCWGC | 5 cut(s) | 836, 1387, 1562, 2350, 3318 |
| Tsp45I | GTSAC | 4 cut(s) | 520, 726, 788, 3339 |
| TspGWI | ACGGA | 2 cut(s) | 714, 3568 |
| TspRI | CASTG | 4 cut(s) | 1539, 1554, 3342, 3922 |
| Tth111I | GACNNNGTC | 1 cut(s) | 3337 |
| XbaI | TCTAGA | 2 cut(s) | 2584, 3100 |
| XceI | RCATGY | 4 cut(s) | 734, 1019, 1749, 3959 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 2646 |
| XmaJI | CCTAGG | 1 cut(s) | 2312 |
| XmnI | GAANNNNTTC | 6 cut(s) | 1185, 1476, 2025, 2451, 2503, 3132 |
| ZrmI | AGTACT | 1 cut(s) | 1410 |
| Zsp2I | ATGCAT | 4 cut(s) | 760, 1004, 1708, 1896 |