pycom05g14390

Toll - interleukin 1 - resistance

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
Physical Location & Seq
Reverse (-)
17929071 .. 17931350
2280 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom05g14390.1

Sequence Viewer

Length: 1848 bp
ATGCACGATTCGCTACAAGAAATGGGAAGGACAATTGTTCAAGAACAATGCATGATAGATCCCGGTAAACGGAGTAGGTTGTTTAATGCTGAGGATGTCTATCATGTATTGAAGAGTAACACGGAAACTCCAAATGTTGAAGCCATATTCGCTAATTGGTTCGAGATTCAAGAGCGACCATTGAAACGTGCTGACTTCAAAAAGATGTTTGACCTAAGATTGCTAGTTGTGGATGGTGGCGACAAATTGAACGCTCCTCTAGACCTTCCTGATTCTCTTCGTTATCTTGAGTGGTGGGGATATCCGTTGGAATCTTTGCCGTCAAATTTTTGTCCGGAAAATCTAGTTGAGCTTCATATGCGATATAGCAAAGTTAAGAAGCTCTGGAAAGAAGGCCAGAGACTTGTGAACTTAGAAGTTATCGATCTGCATTACTCTACAAATCTAACTGAAGTTCCAAATCTCTCTGGGAGTCTAAAAATTGTGAACATAAATCTCTCGTGGTGTTCAAGTTTGGTTGAAGTTCCATCATGTTTTCAACATCTTGACAAGCTTACTCATCTTGATCTTGGATTCTGCACCAGTCTCAAGTATCTTCCAGAGATGCCAGGAAATATTCAATACTTGGATTTAGGAGGCAGTGGTATAAAGGAGTTGCCTGAATCAGTTTGGTCTAACAAAAATATTTCTTACTTGAGCATAAAATGTTGCAAAGACCTTGAGAAACTTCCAAGCAACAGTTGTAAGCTGAAAGCCTCTTGTAGTTTTAATCTATATGGCTGCACATCTCTTGGCGAGTTTTCTGAGCTTCCCCGGGATATACATACATTATCATTGGTTGGTTTCAAGAGACTTGTGAGTCTACCGAATGACATTTGTCAGTTGAAATATCTTCAGAGACTGGATCTCAAAGGTTGCTCTAGATTTTCCAAATTCCCTGAAATCTTGACGCCAATGAAACGTTTGGTGTCTCTTAGTTTGAAAAGGACAGCCGTCAAAATGCTTCCTTCGTCTATTGAGAATCTAATTAGGCTTCAAACTTTAGACCTTAGTGGCTGCAAGCAGCTTCAATCTTTACCAGAGCTCCCATTGCTATGTAATGTTGAAGCTGAAGGCTGCACGTCGCTGAAGAATGTGTCAATTACAAGGACAGCACTCATACGACGTTGGTTCAGACATCGTGATTTTTTCAGATATTTTACTAATTGCCCAAAATTGGATAATAATGCAAGGAGCAACATAATGGAAGAAGCACAGATTAGAATTATGCGAGCGGCATCTAGTGCTCCATCAAAGAACATTCCTTGGCCTGAGATTAAGGTTGTATGTCCAGGAAAAGAAATTCCAAACTGGTTCAGCTATCAAAGTGAGGGATCTTCAGTAAACATCAAGCTTCGTCCAGATTGGTTTCAAGCAGGTTTATTTGGTTTCGCTCTCTGTGCTGTTGTTTCTGGGGTTCCAGAGCCGCAATGTTCCTTGACTGCAAATGCTAATTTCATTGTCAAATTCATGGGTAAAAGGCATAAACTGTTCACTTCTGAAGTCTATATCCCAAAAGGCATCCCCCCGGACTACTTGGGTAACGACCGACATCACGTGCTTGTGTGGAATAAGGCCTTTAGAAGTGAAGGGGTAGCAGAAAAATGCTCCCCTGATGTTTACAAACTTGCTAATGAGGCCTCTGTTGACTTCTGCCTGGAGGATGAAGACGACCGACGCGTTGTCAATATGAAGGTGGAAAGTTGTGGTATATGCCTGTTGTATGCCGAAGATGCTAAGAAATTCAAATTTGATCATCGTCTTCATGTCGAGGGAACCAAAAGTAGAAGAAGAAACGAGACAAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

616

Amino Acids

70.3

Weight (kDa)

8.61

Isoelectric Point (pI)

51.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_3 PF07725 114 - 131 1.3e-06 Leucine Rich Repeat
LRR_14 PF23598 284 - 355 1.4e-07 Leucine-rich repeat region
LRR_13 PF23286 297 - 377 4.2e-08 Disease resistance protein RPS4B-like, leucine-rich repeats
C-JID PF20160 443 - 592 6.5e-17 C-JID domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000020)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g26600 FvH4_2g27070 FvH4_2g27070 FvH4_2g27070 FvH4_2g27370 FvH4_2g27370 FvH4_2g27370 FvH4_2g27370 FvH4_2g27370 FvH4_2g27370 FvH4_2g27370 FvH4_2g27370 FvH4_2g27701 FvH4_2g27720 FvH4_3g05740 FvH4_3g05740 FvH4_3g05740 FvH4_3g05740 FvH4_3g15720 FvH4_5g35770 FvH4_5g35770 FvH4_5g35770 FvH4_5g35770 FvH4_5g35770 FvH4_6g34390 FvH4_6g34410 FvH4_6g34410
malus_domestica MD02G1278900.v1.1 MD03G1127300.v1.1 MD04G1027100.v1.1 MD04G1035000.v1.1 MD04G1035200.v1.1 MD04G1035600.v1.1 MD04G1036000.v1.1 MD04G1036100.v1.1 MD04G1036400.v1.1 MD05G1125400.v1.1 MD05G1125600.v1.1 MD05G1125700.v1.1 MD05G1126000.v1.1 MD05G1131900.v1.1 MD05G1132400.v1.1 MD05G1132600.v1.1 MD05G1132800.v1.1 MD05G1135700.v1.1 MD05G1135800.v1.1 MD05G1136700.v1.1 MD05G1137400.v1.1 MD05G1137900.v1.1 MD05G1138300.v1.1 MD05G1138400.v1.1 MD05G1138500.v1.1 MD05G1141700.v1.1 MD05G1142600.v1.1 MD05G1143300.v1.1 MD05G1145200.v1.1 MD05G1146500.v1.1 MD05G1146600.v1.1 MD05G1147100.v1.1 MD05G1147500.v1.1 MD05G1147600.v1.1 MD05G1148300.v1.1 MD05G1148600.v1.1 MD05G1149400.v1.1 MD05G1149500.v1.1 MD05G1150100.v1.1 MD05G1150200.v1.1 MD05G1150900.v1.1 MD05G1151200.v1.1 MD08G1168700.v1.1 MD10G1128400.v1.1 MD10G1128500.v1.1 MD10G1128600.v1.1 MD10G1134800.v1.1 MD10G1135300.v1.1 MD10G1135800.v1.1 MD10G1135900.v1.1 MD10G1136100.v1.1 MD10G1136200.v1.1 MD10G1136400.v1.1 MD10G1136500.v1.1 MD10G1136600.v1.1 MD10G1137100.v1.1 MD10G1137400.v1.1 MD10G1137500.v1.1 MD10G1137700.v1.1 MD10G1140900.v1.1 MD10G1141100.v1.1 MD10G1141400.v1.1 MD12G1073200.v1.1 MD12G1074900.v1.1 MD16G1140700.v1.1
prunus_persica Prupe.1G160400_v2.0.a1 Prupe.1G160500_v2.0.a1 Prupe.2G060400_v2.0.a1 Prupe.2G060400_v2.0.a1 Prupe.2G060400_v2.0.a1 Prupe.2G060400_v2.0.a1 Prupe.2G060400_v2.0.a1 Prupe.2G060400_v2.0.a1 Prupe.2G083200_v2.0.a1 Prupe.6G152300_v2.0.a1 Prupe.8G037000_v2.0.a1 Prupe.8G117300_v2.0.a1 Prupe.8G117700_v2.0.a1 Prupe.8G118900_v2.0.a1 Prupe.8G173600_v2.0.a1 Prupe.8G173700_v2.0.a1 Prupe.8G176400_v2.0.a1 Prupe.8G179400_v2.0.a1 Prupe.8G179500_v2.0.a1 Prupe.8G179500_v2.0.a1 Prupe.8G179500_v2.0.a1 Prupe.8G179500_v2.0.a1 Prupe.8G179500_v2.0.a1 Prupe.8G179500_v2.0.a1 Prupe.8G179500_v2.0.a1 Prupe.8G179500_v2.0.a1 Prupe.8G179500_v2.0.a1 Prupe.8G179500_v2.0.a1 Prupe.8G179500_v2.0.a1 Prupe.8G237200_v2.0.a1 Prupe.I001800_v2.0.a1 Prupe.I002000_v2.0.a1 Prupe.I002100_v2.0.a1 Prupe.I002200_v2.0.a1 Prupe.I002300_v2.0.a1 Prupe.I002300_v2.0.a1 Prupe.I002300_v2.0.a1
pyrus_communis pycom02g10490 pycom03g08410 pycom04g02350 pycom04g02370 pycom04g02890 pycom04g02920 pycom04g02930 pycom05g09430 pycom05g11970 pycom05g11980 pycom05g12000 pycom05g12010 pycom05g12040 pycom05g12080 pycom05g12100 pycom05g12110 pycom05g12160 pycom05g12910 pycom05g12920 pycom05g12940 pycom05g13220 pycom05g13230 pycom05g13260 pycom05g13300 pycom05g13320 pycom05g13330 pycom05g13350 pycom05g13680 pycom05g13710 pycom05g13720 pycom05g13730 pycom05g14120 pycom05g14130 pycom05g14160 pycom05g14210 pycom05g14250 pycom05g14280 pycom05g14290 pycom05g14340 pycom05g14390 pycom05g14430 pycom05g14460 pycom05g14530 pycom05g14560 pycom05g14570 pycom05g14580 pycom10g11010 pycom10g11020 pycom10g11030 pycom10g11250 pycom10g11640 pycom10g11670 pycom10g11680 pycom10g11720 pycom10g11730 pycom10g11950 pycom10g11960 pycom10g12000 pycom10g12050 pycom10g12070 pycom10g12310
rosa_chinensis RchiOBHm_Chr1g0314371 RchiOBHm_Chr1g0314461 RchiOBHm_Chr1g0314491 RchiOBHm_Chr1g0314661 RchiOBHm_Chr1g0314671 RchiOBHm_Chr1g0314701 RchiOBHm_Chr1g0314711 RchiOBHm_Chr1g0314741 RchiOBHm_Chr1g0327611 RchiOBHm_Chr1g0333931 RchiOBHm_Chr1g0334091 RchiOBHm_Chr1g0334101 RchiOBHm_Chr2g0144731 RchiOBHm_Chr2g0144751 RchiOBHm_Chr3g0451471 RchiOBHm_Chr3g0451481 RchiOBHm_Chr3g0451521 RchiOBHm_Chr3g0451541 RchiOBHm_Chr3g0451581 RchiOBHm_Chr3g0451641 RchiOBHm_Chr3g0451661 RchiOBHm_Chr3g0451671 RchiOBHm_Chr3g0484861 RchiOBHm_Chr5g0013861 RchiOBHm_Chr5g0013871 RchiOBHm_Chr5g0013881 RchiOBHm_Chr5g0013921 RchiOBHm_Chr5g0013931 RchiOBHm_Chr5g0026001 RchiOBHm_Chr5g0026101 RchiOBHm_Chr5g0026421 RchiOBHm_Chr5g0066271 RchiOBHm_Chr6g0287411 RchiOBHm_Chr6g0287421 RchiOBHm_Chr6g0287561 RchiOBHm_Chr6g0287581 RchiOBHm_Chr6g0287591 RchiOBHm_Chr6g0296221 RchiOBHm_Chr7g0237431
rosa_laevigata RLG00000001003 RLG00000011679 RLG00000011716 RLG00000012483 RLG00000012484 RLG00000013019 RLG00000015060 RLG00000020104 RLG00000020105 RLG00000020106 RLG00000020107 RLG00000020108 RLG00000020109 RLG00000023202 RLG00000024217 RLG00000025656 RLG00000025657 RLG00000026224 RLG00000029504 RLG00000029507 RLG00000029508 RLG00000029509 RLG00000029980 RLG00000030042 RLG00000032050 RLG00000032051 RLG00000032052 RLG00000032891 RLG00000032896 RLG00000032900 RLG00000032901 RLG00000032930 RLG00000032931 RLG00000035381 RLG00000035383 RLG00000035847
rosa_multiflora Rmu_co7983036.1_g000001 Rmu_co8026080.1_g000001 Rmu_co8242645.1_g000001 Rmu_co8396077.1_g000001 Rmu_co8406137.1_g000001 Rmu_co8420673.1_g000001 Rmu_co8458221.1_g000001 Rmu_sc0000026.1_g000007 Rmu_sc0000795.1_g000054 Rmu_sc0000997.1_g000011 Rmu_sc0001689.1_g000014 Rmu_sc0001802.1_g000009 Rmu_sc0002354.1_g000053 Rmu_sc0002354.1_g000055 Rmu_sc0002806.1_g000016 Rmu_sc0002833.1_g000022 Rmu_sc0002843.1_g000009 Rmu_sc0002923.1_g000021 Rmu_sc0003020.1_g000017 Rmu_sc0003598.1_g000012 Rmu_sc0003598.1_g000013 Rmu_sc0003598.1_g000014 Rmu_sc0003598.1_g000015 Rmu_sc0003690.1_g000001 Rmu_sc0004708.1_g000014 Rmu_sc0004924.1_g000009 Rmu_sc0004924.1_g000018 Rmu_sc0004924.1_g000022 Rmu_sc0004924.1_g000026 Rmu_sc0004924.1_g000032 Rmu_sc0004924.1_g000033 Rmu_sc0004924.1_g000037 Rmu_sc0004924.1_g000039 Rmu_sc0004974.1_g000006 Rmu_sc0005581.1_g000001 Rmu_sc0005581.1_g000010 Rmu_sc0005803.1_g000021 Rmu_sc0006653.1_g000009 Rmu_sc0007029.1_g000008 Rmu_sc0009360.1_g000007 Rmu_sc0009360.1_g000012 Rmu_sc0009360.1_g000013 Rmu_sc0009360.1_g000015 Rmu_sc0009360.1_g000021 Rmu_sc0009360.1_g000033 Rmu_sc0009360.1_g000048 Rmu_sc0009360.1_g000049 Rmu_sc0009360.1_g000051 Rmu_sc0011096.1_g000005 Rmu_sc0016584.1_g000002 Rmu_sc0020815.1_g000001 Rmu_sc0020815.1_g000002 Rmu_sc0025510.1_g000001 Rmu_sc0026263.1_g000003 Rmu_sc0029456.1_g000001 Rmu_sc0029457.1_g000001 Rmu_sc0029568.1_g000001 Rmu_sc0032214.1_g000001 Rmu_sc0041321.1_g000001 Rmu_sc0042928.1_g000001 Rmu_ssc0000042.1_g000010 Rmu_ssc0000042.1_g000019 Rmu_ssc0000042.1_g000020 Rmu_ssc0000126.1_g000058
rosa_roxburghii Rroxscaffold_164G00436360 Rroxscaffold_164G00436400 Rroxscaffold_164G00436430 Rroxscaffold_164G00436440 Rroxscaffold_164G00436470 Rroxscaffold_1G00052970 Rroxscaffold_1G00062790 Rroxscaffold_1G00062820 Rroxscaffold_2G00100990 Rroxscaffold_2G00101010 Rroxscaffold_3G00224210 Rroxscaffold_4G00297610 Rroxscaffold_4G00317070 Rroxscaffold_4G00317100 Rroxscaffold_4G00317110 Rroxscaffold_4G00317120 Rroxscaffold_4G00322520 Rroxscaffold_4G00322530 Rroxscaffold_4G00323280 Rroxscaffold_4G00331920 Rroxscaffold_6G00410350 Rroxscaffold_6G00428880 Rroxscaffold_6G00428910 Rroxscaffold_6G00428930 Rroxscaffold_7G00171360 Rroxscaffold_7G00171730 Rroxscaffold_7G00178330 Rroxscaffold_7G00178730 Rroxscaffold_7G00180960 Rroxscaffold_7G00181370
rosa_rugosa Rorug01G0001400 Rorug01G0001500 Rorug01G0001600 Rorug01G0001700 Rorug01G0068600 Rorug01G0068700 Rorug02G0389400 Rorug02G0389500 Rorug02G0634000 Rorug02G0634300 Rorug02G0634600 Rorug02G0634800 Rorug02G0634900 Rorug02G0634900 Rorug02G0635000 Rorug02G0635100 Rorug02G0635200 Rorug02G0635300 Rorug02G0635400 Rorug03G0213900 Rorug05G0012800 Rorug05G0012900 Rorug05G0013100 Rorug05G0013300 Rorug05G0090300 Rorug05G0090400 Rorug05G0092900 Rorug05G0093000 Rorug05G0093100 Rorug06G0189200 Rorug06G0189200 Rorug06G0189300 Rorug06G0189400 Rorug06G0259500 Rorug07G0303200 Rorug07G0303300.1
rosa_samantha Rh1AG010600 Rh1AG010900 Rh1AG011800 Rh1AG012100 Rh1AG012500 Rh1AG081000 Rh1AG085900 Rh1AG135300 Rh1AG135400 Rh1AG135500 Rh1AG135700 Rh1AG135800 Rh1AG136400 Rh1BG003400 Rh1BG003700 Rh1BG068500 Rh1BG103400 Rh1BG103500 Rh1BG103600 Rh1CG128600 Rh1CG128800 Rh1DG005800 Rh1DG090100 Rh1DG140800 Rh1DG140900 Rh1DG141100 Rh1DG141200 Rh1DG141500 Rh2AG441200 Rh2BG451500 Rh2BG451800 Rh2BG451900 Rh2CG428500 Rh2DG461500 Rh3AG037000 Rh3AG037100 Rh3AG037200 Rh3BG037600 Rh3BG037700 Rh3BG037800 Rh3BG038100 Rh3BG299500 Rh3BG299800 Rh3BG299900 Rh3CG036200 Rh3CG036400 Rh3CG036500 Rh3CG036800 Rh3CG297200 Rh3DG037100 Rh3DG037200 Rh3DG037400 Rh3DG293200 Rh5BG103800 Rh5BG104100 Rh5BG104200 Rh5BG180100 Rh5BG180200 Rh5BG183000 Rh5BG451600 Rh5CG115600 Rh5CG115700 Rh5CG115900 Rh5CG116100 Rh5CG198800 Rh5CG199300 Rh5CG202400 Rh5DG102100 Rh5DG102200 Rh5DG102300 Rh5DG102600 Rh5DG102800 Rh5DG181100 Rh5DG181300 Rh5DG181800 Rh5DG184900 Rh5DG185100 Rh6AG256000 Rh6AG299200 Rh6AG299300 Rh6AG300400 Rh6AG371800 Rh6BG383300 Rh6CG303400 Rh6CG314400 Rh6CG385000 Rh6DG297800 Rh6DG372300 Rh7BG046900 Rh7BG312300 Rh7BG312500 Rh7BG430400
rosa_wichuraiana Rw0G009620 Rw0G015730 Rw1G000490 Rw1G006410 Rw1G006700 Rw1G011270 Rw1G011280 Rw1G011310 Rw2G036080 Rw3G002740 Rw3G002750 Rw3G002760 Rw3G002770 Rw3G023580 Rw5G009360 Rw5G009370 Rw5G009380 Rw5G009390 Rw5G009400 Rw5G016550 Rw5G016890 Rw5G016910 Rw5G040760 Rw6G022190 Rw6G025910 Rw6G032400 Rw6G032690 Rw6G032790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 858
Acc36I ACCTGC 1 cut(s) 1406
AccBSI CCGCTC 1 cut(s) 1274
AccI GTMKAC 1 cut(s) 862
AccII CGCG 1 cut(s) 1719
AccIII TCCGGA 1 cut(s) 334
AciI CCGC 2 cut(s) 1274, 1466
AclI AACGTT 1 cut(s) 961
AclWI GGATC 3 cut(s) 53, 912, 1381
AcsI RAATTY 6 cut(s) 325, 932, 1341, 1505, 1781, 1787
AcuI CTGAAG 6 cut(s) 471, 878, 1131, 1148, 1362, 1560
AcvI CACGTG 1 cut(s) 1597
AcyI GRCGYC 1 cut(s) 950
AfiI CCNNNNNNNGG 2 cut(s) 69, 1216
AflIII ACRYGT 1 cut(s) 1717
AhdI GACNNNNNGTC 1 cut(s) 1721
AjiI CACGTC 1 cut(s) 1122
AjnI CCWGG 3 cut(s) 607, 1330, 1695
Alw21I GWGCWC 2 cut(s) 1086, 1288
Alw26I GTCTC 6 cut(s) 394, 590, 844, 892, 975, 1832
AlwI GGATC 3 cut(s) 53, 912, 1381
AlwNI CAGNNNCTG 1 cut(s) 901
Ama87I CYCGRG 1 cut(s) 813
Aor13HI TCCGGA 1 cut(s) 334
AoxI GGCC 4 cut(s) 394, 1307, 1614, 1677
ApeKI GCWGC 4 cut(s) 780, 1056, 1063, 1116
ApoI RAATTY 6 cut(s) 325, 932, 1341, 1505, 1781, 1787
AsuC2I CCSGG 4 cut(s) 63, 814, 815, 1568
AvaI CYCGRG 1 cut(s) 813
BanII GRGCYC 1 cut(s) 1086
BauI CACGAG 1 cut(s) 499
BbrPI CACGTG 1 cut(s) 1597
BbsI GAAGAC 2 cut(s) 1713, 1793
Bbv12I GWGCWC 2 cut(s) 1086, 1288
BbvCI CCTCAGC 1 cut(s) 90
BbvI GCAGC 4 cut(s) 767, 1043, 1075, 1103
BccI CCATC 3 cut(s) 227, 535, 1297
BceAI ACGGC 2 cut(s) 304, 977
BciT130I CCWGG 3 cut(s) 609, 1332, 1697
BclI TGATCA 1 cut(s) 1792
BcnI CCSGG 4 cut(s) 63, 814, 815, 1568
BcoDI GTCTC 6 cut(s) 394, 590, 844, 892, 975, 1832
BfaI CTAG 5 cut(s) 224, 260, 344, 921, 1281
BfuAI ACCTGC 1 cut(s) 1406
BisI GCNGC 6 cut(s) 781, 1057, 1064, 1117, 1275, 1466
BlsI GCNGC 6 cut(s) 782, 1058, 1065, 1118, 1276, 1467
Bme1390I CCNGG 7 cut(s) 63, 609, 814, 815, 1332, 1568, 1697
BmeRI GACNNNNNGTC 1 cut(s) 1721
BmeT110I CYCGRG 1 cut(s) 813
BmgBI CACGTC 1 cut(s) 1122
BmiI GGNNCC 2 cut(s) 1458, 1816
BmrFI CCNGG 7 cut(s) 63, 609, 814, 815, 1332, 1568, 1697
BmsI GCATC 4 cut(s) 594, 1286, 1569, 1762
BoxI GACNNNNGTC 2 cut(s) 876, 992
BpiI GAAGAC 2 cut(s) 1713, 1793
BpmI CTGGAG 1 cut(s) 1718
Bpu10I CCTNAGC 1 cut(s) 90
BpuEI CTTGAG 4 cut(s) 308, 572, 715, 740
BpuMI CCSGG 4 cut(s) 63, 814, 815, 1568
Bsa29I ATCGAT 1 cut(s) 423
BsaAI YACGTR 1 cut(s) 1597
BsaBI GATNNNNATC 1 cut(s) 99
BsaHI GRCGYC 1 cut(s) 950
BsaJI CCNNGG 4 cut(s) 812, 813, 1304, 1566
BsaWI WCCGGW 1 cut(s) 334
BsaXI ACNNNNNCTCC 4 cut(s) 112, 142, 1068, 1098
Bsc4I CCNNNNNNNGG 2 cut(s) 69, 1216
Bse1I ACTGG 3 cut(s) 582, 906, 1355
Bse3DI GCAATG 2 cut(s) 1088, 1475
Bse8I GATNNNNATC 1 cut(s) 99
BseAI TCCGGA 1 cut(s) 334
BseBI CCWGG 3 cut(s) 609, 1332, 1697
BseCI ATCGAT 1 cut(s) 423
BseDI CCNNGG 4 cut(s) 812, 813, 1304, 1566
BseGI GGATG 4 cut(s) 100, 238, 1560, 1708
BseJI GATNNNNATC 1 cut(s) 99
BseLI CCNNNNNNNGG 2 cut(s) 69, 1216
BseMI GCAATG 2 cut(s) 1088, 1475
BseMII CTCAG 3 cut(s) 81, 795, 1302
BseNI ACTGG 3 cut(s) 582, 906, 1355
BseRI GAGGAG 1 cut(s) 246
BseXI GCAGC 4 cut(s) 767, 1043, 1075, 1103
BsgI GTGCAG 3 cut(s) 562, 766, 1102
Bsh1236I CGCG 1 cut(s) 1719
Bsh1285I CGRYCG 2 cut(s) 1588, 1714
BshFI GGCC 4 cut(s) 396, 1309, 1616, 1679
BshVI ATCGAT 1 cut(s) 423
BsiEI CGRYCG 2 cut(s) 1588, 1714
BsiHKAI GWGCWC 2 cut(s) 1086, 1288
BsiHKCI CYCGRG 1 cut(s) 813
BsiSI CCGG 4 cut(s) 63, 335, 814, 1568
BslI CCNNNNNNNGG 2 cut(s) 69, 1216
BsmAI GTCTC 6 cut(s) 394, 590, 844, 892, 975, 1832
BsnI GGCC 4 cut(s) 396, 1309, 1616, 1679
BsoBI CYCGRG 1 cut(s) 813
Bsp1286I GDGCHC 2 cut(s) 1086, 1288
Bsp13I TCCGGA 1 cut(s) 334
Bsp143I GATC 6 cut(s) 58, 424, 565, 904, 1373, 1792
BspACI CCGC 2 cut(s) 1274, 1466
BspANI GGCC 4 cut(s) 396, 1309, 1616, 1679
BspCNI CTCAG 3 cut(s) 82, 796, 1303
BspDI ATCGAT 1 cut(s) 423
BspEI TCCGGA 1 cut(s) 334
BspFNI CGCG 1 cut(s) 1719
BspLI GGNNCC 2 cut(s) 1458, 1816
BspMI ACCTGC 1 cut(s) 1406
BspPI GGATC 3 cut(s) 53, 912, 1381
BsrBI CCGCTC 1 cut(s) 1274
BsrDI GCAATG 2 cut(s) 1088, 1475
BsrI ACTGG 3 cut(s) 582, 906, 1355
BssECI CCNNGG 4 cut(s) 812, 813, 1304, 1566
BssMI GATC 6 cut(s) 58, 424, 565, 904, 1373, 1792
BssNI GRCGYC 1 cut(s) 950
BssSI CACGAG 1 cut(s) 499
BssT1I CCWWGG 1 cut(s) 1304
Bst2BI CACGAG 1 cut(s) 499
Bst2UI CCWGG 3 cut(s) 609, 1332, 1697
Bst4CI ACNGT 2 cut(s) 740, 1530
Bst6I CTCTTC 2 cut(s) 107, 282
BstACI GRCGYC 1 cut(s) 950
BstAPI GCANNNNNTGC 1 cut(s) 1283
BstBAI YACGTR 1 cut(s) 1597
BstC8I GCNNGC 2 cut(s) 1061, 1272
BstDEI CTNAG 8 cut(s) 90, 215, 412, 804, 974, 1049, 1311, 1776
BstF5I GGATG 4 cut(s) 100, 238, 1560, 1708
BstFNI CGCG 1 cut(s) 1719
BstKTI GATC 6 cut(s) 61, 427, 568, 907, 1376, 1795
BstMAI GTCTC 6 cut(s) 394, 590, 844, 892, 975, 1832
BstMBI GATC 6 cut(s) 58, 424, 565, 904, 1373, 1792
BstMCI CGRYCG 2 cut(s) 1588, 1714
BstMWI GCNNNNNNNGC 8 cut(s) 10, 149, 358, 1090, 1283, 1439, 1676, 1772
BstNI CCWGG 3 cut(s) 609, 1332, 1697
BstPAI GACNNNNGTC 2 cut(s) 876, 992
BstSCI CCNGG 7 cut(s) 61, 607, 812, 813, 1330, 1566, 1695
BstUI CGCG 1 cut(s) 1719
BstV1I GCAGC 4 cut(s) 767, 1043, 1075, 1103
BstV2I GAAGAC 2 cut(s) 1713, 1793
BstX2I RGATCY 3 cut(s) 58, 904, 1373
BstYI RGATCY 3 cut(s) 58, 904, 1373
Bsu15I ATCGAT 1 cut(s) 423
BsuRI GGCC 4 cut(s) 396, 1309, 1616, 1679
BsuTUI ATCGAT 1 cut(s) 423
BtrI CACGTC 1 cut(s) 1122
BtsCI GGATG 4 cut(s) 100, 238, 1560, 1708
BtsI GCAGTG 1 cut(s) 646
BtsIMutI CAGTG 1 cut(s) 646
BveI ACCTGC 1 cut(s) 1406
Cac8I GCNNGC 2 cut(s) 1061, 1272
CaiI CAGNNNCTG 1 cut(s) 901
Cfr9I CCCGGG 1 cut(s) 813
ClaI ATCGAT 1 cut(s) 423
CseI GACGC 2 cut(s) 958, 1725
CviAII CATG 5 cut(s) 52, 104, 531, 1510, 1805
DdeI CTNAG 8 cut(s) 90, 215, 412, 804, 974, 1049, 1311, 1776
DpnI GATC 6 cut(s) 60, 426, 567, 906, 1375, 1794
DpnII GATC 6 cut(s) 58, 424, 565, 904, 1373, 1792
DrdI GACNNNNNNGTC 1 cut(s) 858
DriI GACNNNNNGTC 1 cut(s) 1721
DseDI GACNNNNNNGTC 1 cut(s) 858
Eam1104I CTCTTC 2 cut(s) 107, 282
Eam1105I GACNNNNNGTC 1 cut(s) 1721
EarI CTCTTC 2 cut(s) 107, 282
Ecl136II GAGCTC 1 cut(s) 1084
Eco130I CCWWGG 1 cut(s) 1304
Eco147I AGGCCT 2 cut(s) 1616, 1679
Eco24I GRGCYC 1 cut(s) 1086
Eco32I GATATC 1 cut(s) 302
Eco53kI GAGCTC 1 cut(s) 1084
Eco57I CTGAAG 6 cut(s) 471, 878, 1131, 1148, 1362, 1560
Eco72I CACGTG 1 cut(s) 1597
Eco88I CYCGRG 1 cut(s) 813
EcoICRI GAGCTC 1 cut(s) 1084
EcoRII CCWGG 3 cut(s) 607, 1330, 1695
EcoRV GATATC 1 cut(s) 302
EcoT14I CCWWGG 1 cut(s) 1304
EcoT22I ATGCAT 1 cut(s) 53
EcoT38I GRGCYC 1 cut(s) 1086
ErhI CCWWGG 1 cut(s) 1304
FaeI CATG 5 cut(s) 55, 107, 534, 1513, 1808
FatI CATG 5 cut(s) 51, 103, 530, 1509, 1804
FauNDI CATATG 1 cut(s) 357
FbaI TGATCA 1 cut(s) 1792
FblI GTMKAC 1 cut(s) 862
Fnu4HI GCNGC 6 cut(s) 781, 1057, 1064, 1117, 1275, 1466
FokI GGATG 4 cut(s) 107, 245, 1547, 1715
FriOI GRGCYC 1 cut(s) 1086
Fsp4HI GCNGC 6 cut(s) 781, 1057, 1064, 1117, 1275, 1466
FspBI CTAG 5 cut(s) 224, 260, 344, 921, 1281
GluI GCNGC 6 cut(s) 781, 1057, 1064, 1117, 1275, 1466
GsuI CTGGAG 1 cut(s) 1718
HaeIII GGCC 4 cut(s) 396, 1309, 1616, 1679
HapII CCGG 4 cut(s) 63, 335, 814, 1568
HgaI GACGC 2 cut(s) 958, 1725
Hin1I GRCGYC 1 cut(s) 950
Hin1II CATG 5 cut(s) 55, 107, 534, 1513, 1808
HincII GTYRAC 1 cut(s) 1687
HindII GTYRAC 1 cut(s) 1687
HindIII AAGCTT 2 cut(s) 551, 1391
HinfI GANTC 9 cut(s) 8, 166, 272, 311, 472, 573, 662, 859, 1021
HpaII CCGG 4 cut(s) 63, 335, 814, 1568
Hpy166II GTNNAC 8 cut(s) 68, 409, 487, 863, 1384, 1533, 1660, 1687
Hpy188I TCNGA 5 cut(s) 805, 897, 1175, 1193, 1540
Hpy8I GTNNAC 8 cut(s) 68, 409, 487, 863, 1384, 1533, 1660, 1687
Hpy99I CGWCG 3 cut(s) 1126, 1167, 1719
HpyAV CCTTC 7 cut(s) 21, 275, 386, 1017, 1106, 1622, 1726
HpyCH4III ACNGT 2 cut(s) 740, 1530
HpyCH4IV ACGT 5 cut(s) 187, 961, 1121, 1165, 1596
HpyF10VI GCNNNNNNNGC 8 cut(s) 10, 149, 358, 1090, 1283, 1439, 1676, 1772
HpyF3I CTNAG 8 cut(s) 90, 215, 412, 804, 974, 1049, 1311, 1776
HpySE526I ACGT 5 cut(s) 187, 961, 1121, 1165, 1596
Hsp92I GRCGYC 1 cut(s) 950
Hsp92II CATG 5 cut(s) 55, 107, 534, 1513, 1808
Kpn2I TCCGGA 1 cut(s) 334
Ksp22I TGATCA 1 cut(s) 1792
Kzo9I GATC 6 cut(s) 58, 424, 565, 904, 1373, 1792
LmnI GCTCC 5 cut(s) 259, 1089, 1233, 1291, 1652
Lsp1109I GCAGC 4 cut(s) 767, 1043, 1075, 1103
LweI GCATC 4 cut(s) 594, 1286, 1569, 1762
MaeI CTAG 5 cut(s) 224, 260, 344, 921, 1281
MaeII ACGT 5 cut(s) 187, 961, 1121, 1165, 1596
MaeIII GTNAC 2 cut(s) 116, 1580
MalI GATC 6 cut(s) 60, 426, 567, 906, 1375, 1794
MbiI CCGCTC 1 cut(s) 1274
MboI GATC 6 cut(s) 58, 424, 565, 904, 1373, 1792
MfeI CAATTG 1 cut(s) 33
MflI RGATCY 3 cut(s) 58, 904, 1373
MhlI GDGCHC 2 cut(s) 1086, 1288
MluI ACGCGT 1 cut(s) 1717
MlyI GAGTC 2 cut(s) 481, 868
MmeI TCCRAC 1 cut(s) 288
MnlI CCTC 9 cut(s) 85, 267, 629, 766, 1363, 1669, 1690, 1693, 1804
Mph1103I ATGCAT 1 cut(s) 53
MroI TCCGGA 1 cut(s) 334
MseI TTAA 4 cut(s) 84, 375, 768, 1317
MslI CAYNNNNRTG 1 cut(s) 1093
MspI CCGG 4 cut(s) 63, 335, 814, 1568
MspR9I CCNGG 7 cut(s) 63, 609, 814, 815, 1332, 1568, 1697
MunI CAATTG 1 cut(s) 33
MvaI CCWGG 3 cut(s) 609, 1332, 1697
MvnI CGCG 1 cut(s) 1719
MwoI GCNNNNNNNGC 8 cut(s) 10, 149, 358, 1090, 1283, 1439, 1676, 1772
NciI CCSGG 4 cut(s) 63, 814, 815, 1568
NdeI CATATG 1 cut(s) 357
NdeII GATC 6 cut(s) 58, 424, 565, 904, 1373, 1792
NlaIII CATG 5 cut(s) 55, 107, 534, 1513, 1808
NlaIV GGNNCC 2 cut(s) 1458, 1816
NsiI ATGCAT 1 cut(s) 53
PceI AGGCCT 2 cut(s) 1616, 1679
PcsI WCGNNNNNNNCGW 1 cut(s) 1716
PfeI GAWTC 7 cut(s) 8, 166, 272, 311, 573, 662, 1021
PfoI TCCNGGA 1 cut(s) 1330
PkrI GCNGC 6 cut(s) 782, 1058, 1065, 1118, 1276, 1467
PleI GAGTC 2 cut(s) 480, 867
PmaCI CACGTG 1 cut(s) 1597
PmlI CACGTG 1 cut(s) 1597
PpsI GAGTC 2 cut(s) 480, 867
Ppu21I YACGTR 1 cut(s) 1597
PshAI GACNNNNGTC 2 cut(s) 876, 992
Psp124BI GAGCTC 1 cut(s) 1086
Psp1406I AACGTT 1 cut(s) 961
Psp6I CCWGG 3 cut(s) 607, 1330, 1695
PspCI CACGTG 1 cut(s) 1597
PspGI CCWGG 3 cut(s) 607, 1330, 1695
PspN4I GGNNCC 2 cut(s) 1458, 1816
PstNI CAGNNNCTG 1 cut(s) 901
PsuI RGATCY 3 cut(s) 58, 904, 1373
RseI CAYNNNNRTG 1 cut(s) 1093
SacI GAGCTC 1 cut(s) 1086
SaqAI TTAA 4 cut(s) 84, 375, 768, 1317
SatI GCNGC 6 cut(s) 781, 1057, 1064, 1117, 1275, 1466
Sau3AI GATC 6 cut(s) 58, 424, 565, 904, 1373, 1792
SchI GAGTC 2 cut(s) 481, 868
ScrFI CCNGG 7 cut(s) 63, 609, 814, 815, 1332, 1568, 1697
SduI GDGCHC 2 cut(s) 1086, 1288
SfaNI GCATC 4 cut(s) 594, 1286, 1569, 1762
SmaI CCCGGG 1 cut(s) 815
SmiMI CAYNNNNRTG 1 cut(s) 1093
SmlI CTYRAG 4 cut(s) 287, 587, 694, 719
SmoI CTYRAG 4 cut(s) 287, 587, 694, 719
SseBI AGGCCT 2 cut(s) 1616, 1679
SsiI CCGC 2 cut(s) 1274, 1466
SspI AATATT 2 cut(s) 616, 685
SspMI CTAG 5 cut(s) 224, 260, 344, 921, 1281
SstI GAGCTC 1 cut(s) 1086
StuI AGGCCT 2 cut(s) 1616, 1679
StyD4I CCNGG 7 cut(s) 61, 607, 812, 813, 1330, 1566, 1695
StyI CCWWGG 1 cut(s) 1304
TaaI ACNGT 2 cut(s) 740, 1530
TaiI ACGT 5 cut(s) 190, 964, 1124, 1168, 1599
TaqI TCGA 3 cut(s) 162, 423, 1809
TaqII GACCGA 2 cut(s) 1602, 1728
TauI GCSGC 2 cut(s) 1277, 1468
TfiI GAWTC 7 cut(s) 8, 166, 272, 311, 573, 662, 1021
Tru1I TTAA 4 cut(s) 84, 375, 768, 1317
Tru9I TTAA 4 cut(s) 84, 375, 768, 1317
TscAI CASTG 1 cut(s) 646
TseI GCWGC 4 cut(s) 780, 1056, 1063, 1116
TspDTI ATGAA 7 cut(s) 344, 971, 1486, 1498, 1719, 1745, 1793
TspGWI ACGGA 3 cut(s) 85, 137, 294
TspMI CCCGGG 1 cut(s) 813
TspRI CASTG 1 cut(s) 646
XapI RAATTY 6 cut(s) 325, 932, 1341, 1505, 1781, 1787
XbaI TCTAGA 2 cut(s) 259, 920
XmaI CCCGGG 1 cut(s) 813
XmiI GTMKAC 1 cut(s) 862
XspI CTAG 5 cut(s) 224, 260, 344, 921, 1281
Zsp2I ATGCAT 1 cut(s) 53
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.