TMV resistance protein N-like
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| TIR | PF01582 | 16 - 192 | 1.2e-53 | TIR domain |
| TIR_2 | PF13676 | 19 - 115 | 5.5e-13 | TIR domain |
| NB-ARC | PF00931 | 200 - 367 | 1.4e-20 | NB-ARC domain |
| WHD_ROQ1 | PF23282 | 436 - 503 | 8.7e-23 | Disease resistance protein Roq1-like, winged-helix domain |
| LRR_3 | PF07725 | 611 - 630 | 3.5e-06 | Leucine Rich Repeat |
| LRR_14 | PF23598 | 764 - 1042 | 5.9e-06 | Leucine-rich repeat region |
| LRR_13 | PF23286 | 814 - 897 | 1.1e-09 | Disease resistance protein RPS4B-like, leucine-rich repeats |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 986, 1344 |
| AccI | GTMKAC | 3 cut(s) | 2570, 3142, 3196 |
| AccII | CGCG | 2 cut(s) | 87, 594 |
| AccIII | TCCGGA | 2 cut(s) | 123, 1948 |
| AclI | AACGTT | 1 cut(s) | 400 |
| AclWI | GGATC | 4 cut(s) | 332, 559, 914, 1959 |
| AcsI | RAATTY | 7 cut(s) | 719, 1706, 1817, 1891, 2250, 2480, 3041 |
| AcuI | CTGAAG | 5 cut(s) | 1055, 1176, 1902, 1970, 3110 |
| AdeI | CACNNNGTG | 1 cut(s) | 55 |
| AfaI | GTAC | 5 cut(s) | 1781, 1996, 2195, 2349, 2878 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 41, 76, 436, 598, 889 |
| AflII | CTTAAG | 3 cut(s) | 1010, 1175, 2207 |
| AflIII | ACRYGT | 3 cut(s) | 54, 346, 1428 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 2196 |
| AhlI | ACTAGT | 1 cut(s) | 767 |
| AjiI | CACGTC | 1 cut(s) | 55 |
| AjnI | CCWGG | 4 cut(s) | 573, 967, 2300, 2635 |
| Alw21I | GWGCWC | 1 cut(s) | 216 |
| AlwI | GGATC | 4 cut(s) | 332, 559, 914, 1959 |
| Ama87I | CYCGRG | 3 cut(s) | 158, 1712, 2450 |
| Aor13HI | TCCGGA | 2 cut(s) | 123, 1948 |
| AoxI | GGCC | 4 cut(s) | 491, 571, 624, 1744 |
| ApoI | RAATTY | 7 cut(s) | 719, 1706, 1817, 1891, 2250, 2480, 3041 |
| ArsI | GACNNNNNNTTYG | 6 cut(s) | 1090, 1122, 1877, 1909, 2242, 2274 |
| Asp700I | GAANNNNTTC | 6 cut(s) | 1068, 1161, 1248, 2997, 3042, 3123 |
| AspLEI | GCGC | 1 cut(s) | 429 |
| AspS9I | GGNCC | 7 cut(s) | 179, 571, 892, 965, 2160, 2665, 2775 |
| AsuC2I | CCSGG | 1 cut(s) | 1827 |
| AsuHPI | GGTGA | 2 cut(s) | 88, 1712 |
| AvaI | CYCGRG | 3 cut(s) | 158, 1712, 2450 |
| AvaII | GGWCC | 6 cut(s) | 179, 892, 965, 2160, 2665, 2775 |
| AxyI | CCTNAGG | 1 cut(s) | 1512 |
| BaeGI | GKGCMC | 1 cut(s) | 842 |
| BanII | GRGCYC | 2 cut(s) | 216, 2379 |
| BauI | CACGAG | 1 cut(s) | 690 |
| BbsI | GAAGAC | 3 cut(s) | 1531, 1890, 3116 |
| Bbv12I | GWGCWC | 1 cut(s) | 216 |
| BbvCI | CCTCAGC | 1 cut(s) | 1548 |
| BccI | CCATC | 6 cut(s) | 349, 415, 714, 1286, 1819, 2666 |
| BceAI | ACGGC | 1 cut(s) | 867 |
| BciT130I | CCWGG | 4 cut(s) | 575, 969, 2302, 2637 |
| BciVI | GTATCC | 2 cut(s) | 1375, 1784 |
| BcnI | CCSGG | 1 cut(s) | 1827 |
| BcuI | ACTAGT | 1 cut(s) | 767 |
| BfaI | CTAG | 5 cut(s) | 632, 768, 932, 993, 2582 |
| BfmI | CTRYAG | 1 cut(s) | 645 |
| BfrI | CTTAAG | 3 cut(s) | 1010, 1175, 2207 |
| BfuI | GTATCC | 2 cut(s) | 1375, 1784 |
| BglII | AGATCT | 1 cut(s) | 1417 |
| Bme1390I | CCNGG | 5 cut(s) | 575, 969, 1827, 2302, 2637 |
| Bme18I | GGWCC | 6 cut(s) | 179, 892, 965, 2160, 2665, 2775 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 2196 |
| BmeT110I | CYCGRG | 3 cut(s) | 158, 1712, 2450 |
| BmgBI | CACGTC | 1 cut(s) | 55 |
| BmgT120I | GGNCC | 7 cut(s) | 179, 571, 892, 965, 2160, 2665, 2775 |
| BmiI | GGNNCC | 6 cut(s) | 181, 878, 1189, 1585, 2162, 2508 |
| BmrFI | CCNGG | 5 cut(s) | 575, 969, 1827, 2302, 2637 |
| BmrI | ACTGGG | 3 cut(s) | 1026, 1792, 2337 |
| BmuI | ACTGGG | 3 cut(s) | 1026, 1792, 2337 |
| BpiI | GAAGAC | 3 cut(s) | 1531, 1890, 3116 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 2446, 2478 |
| BpmI | CTGGAG | 2 cut(s) | 2543, 2771 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1548 |
| BpuEI | CTTGAG | 2 cut(s) | 1346, 2053 |
| BpuMI | CCSGG | 1 cut(s) | 1827 |
| BsaAI | YACGTR | 1 cut(s) | 334 |
| BsaI | GGTCTC | 1 cut(s) | 2196 |
| BsaJI | CCNNGG | 5 cut(s) | 40, 70, 923, 2300, 2635 |
| BsaWI | WCCGGW | 4 cut(s) | 123, 1586, 1948, 2625 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 41, 76, 436, 598, 889 |
| Bse118I | RCCGGY | 1 cut(s) | 429 |
| Bse1I | ACTGG | 9 cut(s) | 99, 558, 1021, 1245, 1787, 2096, 2332, 2397, 2874 |
| Bse21I | CCTNAGG | 1 cut(s) | 1512 |
| Bse3DI | GCAATG | 1 cut(s) | 1805 |
| BseAI | TCCGGA | 2 cut(s) | 123, 1948 |
| BseBI | CCWGG | 4 cut(s) | 575, 969, 2302, 2637 |
| BseDI | CCNNGG | 5 cut(s) | 40, 70, 923, 2300, 2635 |
| BseGI | GGATG | 8 cut(s) | 271, 445, 554, 588, 1276, 1470, 2911, 2944 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 41, 76, 436, 598, 889 |
| BseMI | GCAATG | 1 cut(s) | 1805 |
| BseMII | CTCAG | 6 cut(s) | 76, 486, 971, 1539, 1973, 2701 |
| BseNI | ACTGG | 9 cut(s) | 99, 558, 1021, 1245, 1787, 2096, 2332, 2397, 2874 |
| BseRI | GAGGAG | 3 cut(s) | 180, 377, 2962 |
| BseSI | GKGCMC | 1 cut(s) | 842 |
| BsgI | GTGCAG | 1 cut(s) | 1668 |
| Bsh1236I | CGCG | 2 cut(s) | 87, 594 |
| BshFI | GGCC | 4 cut(s) | 493, 573, 626, 1746 |
| BsiHKAI | GWGCWC | 1 cut(s) | 216 |
| BsiHKCI | CYCGRG | 3 cut(s) | 158, 1712, 2450 |
| BsiSI | CCGG | 6 cut(s) | 124, 430, 1587, 1826, 1949, 2626 |
| BslFI | GGGAC | 6 cut(s) | 165, 1799, 1997, 2146, 2344, 2618 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 41, 76, 436, 598, 889 |
| BsmBI | CGTCTC | 2 cut(s) | 162, 1758 |
| BsmFI | GGGAC | 6 cut(s) | 165, 1799, 1997, 2146, 2344, 2618 |
| BsmI | GAATGC | 2 cut(s) | 293, 1161 |
| BsnI | GGCC | 4 cut(s) | 493, 573, 626, 1746 |
| Bso31I | GGTCTC | 1 cut(s) | 2196 |
| BsoBI | CYCGRG | 3 cut(s) | 158, 1712, 2450 |
| Bsp1286I | GDGCHC | 3 cut(s) | 216, 842, 2379 |
| Bsp13I | TCCGGA | 2 cut(s) | 123, 1948 |
| Bsp1407I | TGTACA | 1 cut(s) | 1994 |
| Bsp143I | GATC | 5 cut(s) | 337, 551, 919, 1417, 1951 |
| BspANI | GGCC | 4 cut(s) | 493, 573, 626, 1746 |
| BspCNI | CTCAG | 6 cut(s) | 75, 487, 970, 1540, 1972, 2700 |
| BspEI | TCCGGA | 2 cut(s) | 123, 1948 |
| BspFNI | CGCG | 2 cut(s) | 87, 594 |
| BspLI | GGNNCC | 6 cut(s) | 181, 878, 1189, 1585, 2162, 2508 |
| BspPI | GGATC | 4 cut(s) | 332, 559, 914, 1959 |
| BspTI | CTTAAG | 3 cut(s) | 1010, 1175, 2207 |
| BspTNI | GGTCTC | 1 cut(s) | 2196 |
| BsrDI | GCAATG | 1 cut(s) | 1805 |
| BsrFI | RCCGGY | 1 cut(s) | 429 |
| BsrGI | TGTACA | 1 cut(s) | 1994 |
| BsrI | ACTGG | 9 cut(s) | 99, 558, 1021, 1245, 1787, 2096, 2332, 2397, 2874 |
| BssAI | RCCGGY | 1 cut(s) | 429 |
| BssECI | CCNNGG | 5 cut(s) | 40, 70, 923, 2300, 2635 |
| BssMI | GATC | 5 cut(s) | 337, 551, 919, 1417, 1951 |
| BssSI | CACGAG | 1 cut(s) | 690 |
| BssT1I | CCWWGG | 1 cut(s) | 923 |
| Bst2BI | CACGAG | 1 cut(s) | 690 |
| Bst2UI | CCWGG | 4 cut(s) | 575, 969, 2302, 2637 |
| Bst4CI | ACNGT | 5 cut(s) | 92, 646, 1994, 2198, 2662 |
| Bst6I | CTCTTC | 4 cut(s) | 22, 253, 1761, 2133 |
| BstAFI | CTTAAG | 3 cut(s) | 1010, 1175, 2207 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 2229 |
| BstAUI | TGTACA | 1 cut(s) | 1994 |
| BstBAI | YACGTR | 1 cut(s) | 334 |
| BstC8I | GCNNGC | 4 cut(s) | 1170, 2148, 3010, 3055 |
| BstF5I | GGATG | 8 cut(s) | 271, 445, 554, 588, 1276, 1470, 2911, 2944 |
| BstFNI | CGCG | 2 cut(s) | 87, 594 |
| BstHHI | GCGC | 1 cut(s) | 429 |
| BstKTI | GATC | 5 cut(s) | 340, 554, 922, 1420, 1954 |
| BstMBI | GATC | 5 cut(s) | 337, 551, 919, 1417, 1951 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 383, 796, 2229, 2515, 3173 |
| BstNI | CCWGG | 4 cut(s) | 575, 969, 2302, 2637 |
| BstNSI | RCATGY | 5 cut(s) | 350, 1338, 1432, 1640, 1666 |
| BstSCI | CCNGG | 5 cut(s) | 573, 967, 1825, 2300, 2635 |
| BstSFI | CTRYAG | 1 cut(s) | 645 |
| BstSLI | GKGCMC | 1 cut(s) | 842 |
| BstUI | CGCG | 2 cut(s) | 87, 594 |
| BstV2I | GAAGAC | 3 cut(s) | 1531, 1890, 3116 |
| BstX2I | RGATCY | 3 cut(s) | 337, 1417, 1951 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 1895, 2255 |
| BstYI | RGATCY | 3 cut(s) | 337, 1417, 1951 |
| Bsu36I | CCTNAGG | 1 cut(s) | 1512 |
| BsuI | GTATCC | 2 cut(s) | 1375, 1784 |
| BsuRI | GGCC | 4 cut(s) | 493, 573, 626, 1746 |
| BtrI | CACGTC | 1 cut(s) | 55 |
| BtsCI | GGATG | 8 cut(s) | 271, 445, 554, 588, 1276, 1470, 2911, 2944 |
| BtsI | GCAGTG | 3 cut(s) | 21, 1198, 1720 |
| BtsIMutI | CAGTG | 5 cut(s) | 21, 565, 1198, 1720, 2103 |
| Cac8I | GCNNGC | 4 cut(s) | 1170, 2148, 3010, 3055 |
| CfoI | GCGC | 1 cut(s) | 429 |
| Cfr10I | RCCGGY | 1 cut(s) | 429 |
| Cfr13I | GGNCC | 7 cut(s) | 179, 571, 892, 965, 2160, 2665, 2775 |
| CseI | GACGC | 4 cut(s) | 1536, 2425, 2507, 3173 |
| Csp6I | GTAC | 5 cut(s) | 1780, 1995, 2194, 2348, 2877 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1122, 1157 |
| CviQI | GTAC | 5 cut(s) | 1780, 1995, 2194, 2348, 2877 |
| DpnI | GATC | 5 cut(s) | 339, 553, 921, 1419, 1953 |
| DpnII | GATC | 5 cut(s) | 337, 551, 919, 1417, 1951 |
| DraI | TTTAAA | 2 cut(s) | 1086, 2532 |
| DraIII | CACNNNGTG | 1 cut(s) | 55 |
| DriI | GACNNNNNGTC | 1 cut(s) | 2196 |
| Eam1104I | CTCTTC | 4 cut(s) | 22, 253, 1761, 2133 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 2196 |
| EarI | CTCTTC | 4 cut(s) | 22, 253, 1761, 2133 |
| EciI | GGCGGA | 1 cut(s) | 869 |
| Ecl136II | GAGCTC | 1 cut(s) | 214 |
| Eco130I | CCWWGG | 1 cut(s) | 923 |
| Eco147I | AGGCCT | 2 cut(s) | 493, 1746 |
| Eco24I | GRGCYC | 2 cut(s) | 216, 2379 |
| Eco31I | GGTCTC | 1 cut(s) | 2196 |
| Eco32I | GATATC | 2 cut(s) | 1555, 1775 |
| Eco47I | GGWCC | 6 cut(s) | 179, 892, 965, 2160, 2665, 2775 |
| Eco53kI | GAGCTC | 1 cut(s) | 214 |
| Eco57I | CTGAAG | 5 cut(s) | 1055, 1176, 1902, 1970, 3110 |
| Eco81I | CCTNAGG | 1 cut(s) | 1512 |
| Eco88I | CYCGRG | 3 cut(s) | 158, 1712, 2450 |
| EcoICRI | GAGCTC | 1 cut(s) | 214 |
| EcoO109I | RGGNCCY | 2 cut(s) | 571, 892 |
| EcoRII | CCWGG | 4 cut(s) | 573, 967, 2300, 2635 |
| EcoRV | GATATC | 2 cut(s) | 1555, 1775 |
| EcoT14I | CCWWGG | 1 cut(s) | 923 |
| EcoT22I | ATGCAT | 2 cut(s) | 1470, 1668 |
| EcoT38I | GRGCYC | 2 cut(s) | 216, 2379 |
| ErhI | CCWWGG | 1 cut(s) | 923 |
| Esp3I | CGTCTC | 2 cut(s) | 162, 1758 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 3099, 3131, 3141, 3173, 3153, 3185 |
| FaqI | GGGAC | 6 cut(s) | 165, 1799, 1997, 2146, 2344, 2618 |
| FauI | CCCGC | 3 cut(s) | 92, 190, 1399 |
| FauNDI | CATATG | 2 cut(s) | 653, 1848 |
| FblI | GTMKAC | 3 cut(s) | 2570, 3142, 3196 |
| FokI | GGATG | 8 cut(s) | 278, 452, 541, 595, 1283, 1477, 2898, 2931 |
| FriOI | GRGCYC | 2 cut(s) | 216, 2379 |
| FspBI | CTAG | 5 cut(s) | 632, 768, 932, 993, 2582 |
| GlaI | GCGC | 1 cut(s) | 428 |
| GsuI | CTGGAG | 2 cut(s) | 2543, 2771 |
| HaeIII | GGCC | 4 cut(s) | 493, 573, 626, 1746 |
| HapII | CCGG | 6 cut(s) | 124, 430, 1587, 1826, 1949, 2626 |
| HgaI | GACGC | 4 cut(s) | 1536, 2425, 2507, 3173 |
| HhaI | GCGC | 1 cut(s) | 429 |
| Hin6I | GCGC | 1 cut(s) | 427 |
| HinP1I | GCGC | 1 cut(s) | 427 |
| HincII | GTYRAC | 1 cut(s) | 2571 |
| HindII | GTYRAC | 1 cut(s) | 2571 |
| HindIII | AAGCTT | 3 cut(s) | 726, 2039, 2171 |
| HpaII | CCGG | 6 cut(s) | 124, 430, 1587, 1826, 1949, 2626 |
| HphI | GGTGA | 2 cut(s) | 88, 1712 |
| Hpy166II | GTNNAC | 4 cut(s) | 1508, 2571, 3143, 3197 |
| Hpy8I | GTNNAC | 4 cut(s) | 1508, 2571, 3143, 3197 |
| Hpy99I | CGWCG | 7 cut(s) | 56, 92, 2866, 2920, 2923, 2953, 2956 |
| HpyCH4III | ACNGT | 5 cut(s) | 92, 646, 1994, 2198, 2662 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 383, 796, 2229, 2515, 3173 |
| HspAI | GCGC | 1 cut(s) | 427 |
| Kpn2I | TCCGGA | 2 cut(s) | 123, 1948 |
| Kzo9I | GATC | 5 cut(s) | 337, 551, 919, 1417, 1951 |
| LmnI | GCTCC | 8 cut(s) | 796, 882, 1022, 1516, 2506, 2515, 2602, 2704 |
| MaeI | CTAG | 5 cut(s) | 632, 768, 932, 993, 2582 |
| MaeIII | GTNAC | 5 cut(s) | 2413, 2857, 2904, 2937, 3063 |
| MalI | GATC | 5 cut(s) | 339, 553, 921, 1419, 1953 |
| MboI | GATC | 5 cut(s) | 337, 551, 919, 1417, 1951 |
| MfeI | CAATTG | 4 cut(s) | 198, 1497, 1593, 2337 |
| MflI | RGATCY | 3 cut(s) | 337, 1417, 1951 |
| MhlI | GDGCHC | 3 cut(s) | 216, 842, 2379 |
| MlyI | GAGTC | 3 cut(s) | 150, 506, 1972 |
| MmeI | TCCRAC | 7 cut(s) | 925, 1359, 2580, 2660, 2682, 2906, 2939 |
| Mph1103I | ATGCAT | 2 cut(s) | 1470, 1668 |
| MroI | TCCGGA | 2 cut(s) | 123, 1948 |
| MroXI | GAANNNNTTC | 6 cut(s) | 1068, 1161, 1248, 2997, 3042, 3123 |
| MslI | CAYNNNNRTG | 1 cut(s) | 108 |
| MspA1I | CMGCKG | 2 cut(s) | 377, 1168 |
| MspCI | CTTAAG | 3 cut(s) | 1010, 1175, 2207 |
| MspI | CCGG | 6 cut(s) | 124, 430, 1587, 1826, 1949, 2626 |
| MspR9I | CCNGG | 5 cut(s) | 575, 969, 1827, 2302, 2637 |
| MunI | CAATTG | 4 cut(s) | 198, 1497, 1593, 2337 |
| Mva1269I | GAATGC | 2 cut(s) | 293, 1161 |
| MvaI | CCWGG | 4 cut(s) | 575, 969, 2302, 2637 |
| MvnI | CGCG | 2 cut(s) | 87, 594 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 383, 796, 2229, 2515, 3173 |
| NciI | CCSGG | 1 cut(s) | 1827 |
| NdeI | CATATG | 2 cut(s) | 653, 1848 |
| NdeII | GATC | 5 cut(s) | 337, 551, 919, 1417, 1951 |
| NlaIV | GGNNCC | 6 cut(s) | 181, 878, 1189, 1585, 2162, 2508 |
| NmuCI | GTSAC | 1 cut(s) | 2413 |
| NsiI | ATGCAT | 2 cut(s) | 1470, 1668 |
| NspI | RCATGY | 5 cut(s) | 350, 1338, 1432, 1640, 1666 |
| PaeR7I | CTCGAG | 2 cut(s) | 158, 2450 |
| PceI | AGGCCT | 2 cut(s) | 493, 1746 |
| PciI | ACATGT | 2 cut(s) | 346, 1428 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 2797, 2867 |
| PctI | GAATGC | 2 cut(s) | 293, 1161 |
| PdmI | GAANNNNTTC | 6 cut(s) | 1068, 1161, 1248, 2997, 3042, 3123 |
| PfoI | TCCNGGA | 1 cut(s) | 967 |
| PleI | GAGTC | 3 cut(s) | 150, 505, 1971 |
| PpsI | GAGTC | 3 cut(s) | 150, 505, 1971 |
| Ppu21I | YACGTR | 1 cut(s) | 334 |
| PpuMI | RGGWCCY | 1 cut(s) | 892 |
| PscI | ACATGT | 2 cut(s) | 346, 1428 |
| PsiI | TTATAA | 2 cut(s) | 986, 1344 |
| Psp124BI | GAGCTC | 1 cut(s) | 216 |
| Psp1406I | AACGTT | 1 cut(s) | 400 |
| Psp5II | RGGWCCY | 1 cut(s) | 892 |
| Psp6I | CCWGG | 4 cut(s) | 573, 967, 2300, 2635 |
| PspGI | CCWGG | 4 cut(s) | 573, 967, 2300, 2635 |
| PspN4I | GGNNCC | 6 cut(s) | 181, 878, 1189, 1585, 2162, 2508 |
| PspPI | GGNCC | 7 cut(s) | 179, 571, 892, 965, 2160, 2665, 2775 |
| PspPPI | RGGWCCY | 1 cut(s) | 892 |
| PsuI | RGATCY | 3 cut(s) | 337, 1417, 1951 |
| PvuII | CAGCTG | 1 cut(s) | 377 |
| RsaI | GTAC | 5 cut(s) | 1781, 1996, 2195, 2349, 2878 |
| RsaNI | GTAC | 5 cut(s) | 1780, 1995, 2194, 2348, 2877 |
| RseI | CAYNNNNRTG | 1 cut(s) | 108 |
| SacI | GAGCTC | 1 cut(s) | 216 |
| SalI | GTCGAC | 1 cut(s) | 2569 |
| Sau3AI | GATC | 5 cut(s) | 337, 551, 919, 1417, 1951 |
| Sau96I | GGNCC | 7 cut(s) | 179, 571, 892, 965, 2160, 2665, 2775 |
| SchI | GAGTC | 3 cut(s) | 150, 506, 1972 |
| ScrFI | CCNGG | 5 cut(s) | 575, 969, 1827, 2302, 2637 |
| SduI | GDGCHC | 3 cut(s) | 216, 842, 2379 |
| SfcI | CTRYAG | 1 cut(s) | 645 |
| Sfr274I | CTCGAG | 2 cut(s) | 158, 2450 |
| SgrAI | CRCCGGYG | 1 cut(s) | 429 |
| SinI | GGWCC | 6 cut(s) | 179, 892, 965, 2160, 2665, 2775 |
| SlaI | CTCGAG | 2 cut(s) | 158, 2450 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 108 |
| SmlI | CTYRAG | 7 cut(s) | 158, 1010, 1175, 1325, 2068, 2207, 2450 |
| SmoI | CTYRAG | 7 cut(s) | 158, 1010, 1175, 1325, 2068, 2207, 2450 |
| SpeI | ACTAGT | 1 cut(s) | 767 |
| SseBI | AGGCCT | 2 cut(s) | 493, 1746 |
| SspMI | CTAG | 5 cut(s) | 632, 768, 932, 993, 2582 |
| SstI | GAGCTC | 1 cut(s) | 216 |
| StuI | AGGCCT | 2 cut(s) | 493, 1746 |
| StyD4I | CCNGG | 5 cut(s) | 573, 967, 1825, 2300, 2635 |
| StyI | CCWWGG | 1 cut(s) | 923 |
| TaaI | ACNGT | 5 cut(s) | 92, 646, 1994, 2198, 2662 |
| TaqII | GACCGA | 1 cut(s) | 167 |
| TatI | WGTACW | 3 cut(s) | 1779, 1994, 2876 |
| TauI | GCSGC | 3 cut(s) | 8, 594, 1392 |
| TscAI | CASTG | 5 cut(s) | 28, 565, 1205, 1727, 2103 |
| TseFI | GTSAC | 1 cut(s) | 2413 |
| Tsp45I | GTSAC | 1 cut(s) | 2413 |
| TspDTI | ATGAA | 9 cut(s) | 98, 599, 727, 1053, 1071, 1077, 1485, 1719, 3179 |
| TspGWI | ACGGA | 4 cut(s) | 1493, 1803, 2904, 2937 |
| TspRI | CASTG | 5 cut(s) | 28, 565, 1205, 1727, 2103 |
| Vha464I | CTTAAG | 3 cut(s) | 1010, 1175, 2207 |
| VpaK11BI | GGWCC | 6 cut(s) | 179, 892, 965, 2160, 2665, 2775 |
| XapI | RAATTY | 7 cut(s) | 719, 1706, 1817, 1891, 2250, 2480, 3041 |
| XbaI | TCTAGA | 1 cut(s) | 631 |
| XceI | RCATGY | 5 cut(s) | 350, 1338, 1432, 1640, 1666 |
| XhoI | CTCGAG | 2 cut(s) | 158, 2450 |
| XmiI | GTMKAC | 3 cut(s) | 2570, 3142, 3196 |
| XmnI | GAANNNNTTC | 6 cut(s) | 1068, 1161, 1248, 2997, 3042, 3123 |
| XspI | CTAG | 5 cut(s) | 632, 768, 932, 993, 2582 |
| Zsp2I | ATGCAT | 2 cut(s) | 1470, 1668 |