TMV resistance protein N-like
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| TIR | PF01582 | 15 - 194 | 7.3e-55 | TIR domain |
| TIR_2 | PF13676 | 18 - 125 | 2.5e-14 | TIR domain |
| NB-ARC | PF00931 | 196 - 369 | 2.1e-22 | NB-ARC domain |
| WHD_ROQ1 | PF23282 | 437 - 506 | 1.4e-18 | Disease resistance protein Roq1-like, winged-helix domain |
| C-JID | PF20160 | 931 - 1088 | 1.2e-17 | C-JID domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 1296, 2675 |
| AccII | CGCG | 1 cut(s) | 3120 |
| AciI | CCGC | 2 cut(s) | 452, 3175 |
| AclI | AACGTT | 1 cut(s) | 391 |
| AclWI | GGATC | 6 cut(s) | 323, 1631, 1644, 2160, 2625, 2700 |
| AcoI | YGGCCR | 1 cut(s) | 834 |
| AcsI | RAATTY | 5 cut(s) | 1253, 1822, 2109, 2269, 2805 |
| AcuI | CTGAAG | 3 cut(s) | 833, 1650, 1931 |
| AfaI | GTAC | 7 cut(s) | 342, 805, 883, 1584, 2026, 2337, 3155 |
| AfeI | AGCGCT | 1 cut(s) | 3005 |
| AfiI | CCNNNNNNNGG | 8 cut(s) | 941, 1762, 1804, 1969, 2416, 2609, 2635, 3216 |
| AflII | CTTAAG | 2 cut(s) | 1700, 2237 |
| AflIII | ACRYGT | 1 cut(s) | 2225 |
| AjiI | CACGTC | 2 cut(s) | 2565, 2756 |
| AjnI | CCWGG | 6 cut(s) | 573, 967, 1114, 1962, 2125, 2650 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 2202, 2234, 3255, 3287 |
| Alw21I | GWGCWC | 4 cut(s) | 276, 1080, 2391, 2463 |
| Alw26I | GTCTC | 8 cut(s) | 626, 1113, 1443, 1772, 2084, 2567, 2584, 3241 |
| Alw44I | GTGCAC | 1 cut(s) | 272 |
| AlwI | GGATC | 6 cut(s) | 323, 1631, 1644, 2160, 2625, 2700 |
| Ama87I | CYCGRG | 3 cut(s) | 488, 1158, 2000 |
| Aor51HI | AGCGCT | 1 cut(s) | 3005 |
| AoxI | GGCC | 8 cut(s) | 180, 485, 571, 834, 964, 1906, 2648, 3132 |
| ApaLI | GTGCAC | 1 cut(s) | 272 |
| ApoI | RAATTY | 5 cut(s) | 1253, 1822, 2109, 2269, 2805 |
| AspLEI | GCGC | 1 cut(s) | 3006 |
| AspS9I | GGNCC | 4 cut(s) | 181, 486, 571, 965 |
| AsuC2I | CCSGG | 3 cut(s) | 82, 1539, 2796 |
| AsuHPI | GGTGA | 7 cut(s) | 168, 305, 959, 1130, 1745, 2830, 3232 |
| AsuII | TTCGAA | 1 cut(s) | 723 |
| AvaI | CYCGRG | 3 cut(s) | 488, 1158, 2000 |
| AxyI | CCTNAGG | 1 cut(s) | 1761 |
| BaeGI | GKGCMC | 3 cut(s) | 276, 404, 2704 |
| BalI | TGGCCA | 1 cut(s) | 836 |
| BamHI | GGATCC | 1 cut(s) | 1636 |
| BanII | GRGCYC | 5 cut(s) | 1080, 2391, 2463, 2974, 3198 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 3370, 3402 |
| BauI | CACGAG | 2 cut(s) | 864, 2195 |
| BbsI | GAAGAC | 2 cut(s) | 1227, 1769 |
| Bbv12I | GWGCWC | 4 cut(s) | 276, 1080, 2391, 2463 |
| BbvCI | CCTCAGC | 4 cut(s) | 690, 1968, 2330, 2402 |
| BbvI | GCAGC | 8 cut(s) | 461, 719, 1890, 2265, 2285, 2511, 2546, 2993 |
| BccI | CCATC | 9 cut(s) | 108, 320, 340, 850, 1802, 1840, 2091, 2982, 3206 |
| BceAI | ACGGC | 3 cut(s) | 337, 864, 2572 |
| BciT130I | CCWGG | 6 cut(s) | 575, 969, 1116, 1964, 2127, 2652 |
| BciVI | GTATCC | 1 cut(s) | 2961 |
| BcnI | CCSGG | 3 cut(s) | 82, 1539, 2796 |
| BcoDI | GTCTC | 8 cut(s) | 626, 1113, 1443, 1772, 2084, 2567, 2584, 3241 |
| BfaI | CTAG | 2 cut(s) | 2397, 2570 |
| BfoI | RGCGCY | 1 cut(s) | 3007 |
| BfrI | CTTAAG | 2 cut(s) | 1700, 2237 |
| BfuI | GTATCC | 1 cut(s) | 2961 |
| BglII | AGATCT | 3 cut(s) | 1648, 1978, 3256 |
| Bme1390I | CCNGG | 9 cut(s) | 82, 575, 969, 1116, 1539, 1964, 2127, 2652, 2796 |
| BmeT110I | CYCGRG | 3 cut(s) | 488, 1158, 2000 |
| BmgBI | CACGTC | 2 cut(s) | 2565, 2756 |
| BmgT120I | GGNCC | 4 cut(s) | 181, 486, 571, 965 |
| BmiI | GGNNCC | 7 cut(s) | 1638, 1974, 2408, 2971, 3173, 3195, 3303 |
| BmrFI | CCNGG | 9 cut(s) | 82, 575, 969, 1116, 1539, 1964, 2127, 2652, 2796 |
| BmrI | ACTGGG | 2 cut(s) | 1234, 1813 |
| BmsI | GCATC | 8 cut(s) | 358, 1360, 1378, 1467, 1671, 2068, 2112, 2539 |
| BmuI | ACTGGG | 2 cut(s) | 1234, 1813 |
| BpiI | GAAGAC | 2 cut(s) | 1227, 1769 |
| BplI | GAGNNNNNCTC | 6 cut(s) | 1588, 1620, 1706, 1738, 2564, 2596 |
| BpmI | CTGGAG | 2 cut(s) | 176, 963 |
| Bpu10I | CCTNAGC | 7 cut(s) | 690, 1566, 1621, 1968, 2330, 2402, 2411 |
| Bpu14I | TTCGAA | 1 cut(s) | 723 |
| BpuMI | CCSGG | 3 cut(s) | 82, 1539, 2796 |
| Bsa29I | ATCGAT | 2 cut(s) | 1431, 1941 |
| BsaBI | GATNNNNATC | 2 cut(s) | 954, 2849 |
| BsaI | GGTCTC | 1 cut(s) | 1772 |
| BsaJI | CCNNGG | 8 cut(s) | 967, 1114, 1537, 1632, 2528, 2651, 2887, 3129 |
| BsaWI | WCCGGW | 1 cut(s) | 3168 |
| Bsc4I | CCNNNNNNNGG | 8 cut(s) | 941, 1762, 1804, 1969, 2416, 2609, 2635, 3216 |
| Bse118I | RCCGGY | 1 cut(s) | 178 |
| Bse1I | ACTGG | 7 cut(s) | 159, 636, 1229, 1808, 2343, 2487, 2629 |
| Bse21I | CCTNAGG | 1 cut(s) | 1761 |
| Bse3DI | GCAATG | 1 cut(s) | 684 |
| Bse8I | GATNNNNATC | 2 cut(s) | 954, 2849 |
| BseBI | CCWGG | 6 cut(s) | 575, 969, 1116, 1964, 2127, 2652 |
| BseCI | ATCGAT | 2 cut(s) | 1431, 1941 |
| BseDI | CCNNGG | 8 cut(s) | 967, 1114, 1537, 1632, 2528, 2651, 2887, 3129 |
| BseGI | GGATG | 7 cut(s) | 268, 640, 1576, 1813, 2095, 2554, 2843 |
| BseJI | GATNNNNATC | 2 cut(s) | 954, 2849 |
| BseLI | CCNNNNNNNGG | 8 cut(s) | 941, 1762, 1804, 1969, 2416, 2609, 2635, 3216 |
| BseMI | GCAATG | 1 cut(s) | 684 |
| BseMII | CTCAG | 8 cut(s) | 681, 1775, 1959, 1998, 2321, 2393, 2402, 3385 |
| BseNI | ACTGG | 7 cut(s) | 159, 636, 1229, 1808, 2343, 2487, 2629 |
| BseRI | GAGGAG | 4 cut(s) | 84, 177, 2327, 2853 |
| BseSI | GKGCMC | 3 cut(s) | 276, 404, 2704 |
| BseXI | GCAGC | 8 cut(s) | 461, 719, 1890, 2265, 2285, 2511, 2546, 2993 |
| BsgI | GTGCAG | 3 cut(s) | 1784, 2545, 2583 |
| Bsh1236I | CGCG | 1 cut(s) | 3120 |
| Bsh1285I | CGRYCG | 1 cut(s) | 3169 |
| BshFI | GGCC | 8 cut(s) | 182, 487, 573, 836, 966, 1908, 2650, 3134 |
| BshVI | ATCGAT | 2 cut(s) | 1431, 1941 |
| BsiEI | CGRYCG | 1 cut(s) | 3169 |
| BsiHKAI | GWGCWC | 4 cut(s) | 276, 1080, 2391, 2463 |
| BsiHKCI | CYCGRG | 3 cut(s) | 488, 1158, 2000 |
| BsiSI | CCGG | 5 cut(s) | 82, 179, 1539, 2795, 3169 |
| BsiWI | CGTACG | 1 cut(s) | 881 |
| BslFI | GGGAC | 3 cut(s) | 874, 2791, 3371 |
| BslI | CCNNNNNNNGG | 8 cut(s) | 941, 1762, 1804, 1969, 2416, 2609, 2635, 3216 |
| BsmAI | GTCTC | 8 cut(s) | 626, 1113, 1443, 1772, 2084, 2567, 2584, 3241 |
| BsmBI | CGTCTC | 1 cut(s) | 2084 |
| BsmFI | GGGAC | 3 cut(s) | 874, 2791, 3371 |
| BsmI | GAATGC | 4 cut(s) | 1414, 1529, 1622, 2915 |
| BsnI | GGCC | 8 cut(s) | 182, 487, 573, 836, 966, 1908, 2650, 3134 |
| Bso31I | GGTCTC | 1 cut(s) | 1772 |
| BsoBI | CYCGRG | 3 cut(s) | 488, 1158, 2000 |
| Bsp119I | TTCGAA | 1 cut(s) | 723 |
| Bsp1286I | GDGCHC | 8 cut(s) | 276, 404, 1080, 2391, 2463, 2704, 2974, 3198 |
| Bsp1407I | TGTACA | 1 cut(s) | 2024 |
| Bsp19I | CCATGG | 2 cut(s) | 1632, 2528 |
| Bsp68I | TCGCGA | 1 cut(s) | 3120 |
| BspACI | CCGC | 2 cut(s) | 452, 3175 |
| BspANI | GGCC | 8 cut(s) | 182, 487, 573, 836, 966, 1908, 2650, 3134 |
| BspCNI | CTCAG | 8 cut(s) | 682, 1774, 1960, 1997, 2322, 2394, 2403, 3384 |
| BspDI | ATCGAT | 2 cut(s) | 1431, 1941 |
| BspFNI | CGCG | 1 cut(s) | 3120 |
| BspLI | GGNNCC | 7 cut(s) | 1638, 1974, 2408, 2971, 3173, 3195, 3303 |
| BspPI | GGATC | 6 cut(s) | 323, 1631, 1644, 2160, 2625, 2700 |
| BspT104I | TTCGAA | 1 cut(s) | 723 |
| BspTI | CTTAAG | 2 cut(s) | 1700, 2237 |
| BspTNI | GGTCTC | 1 cut(s) | 1772 |
| BsrDI | GCAATG | 1 cut(s) | 684 |
| BsrFI | RCCGGY | 1 cut(s) | 178 |
| BsrGI | TGTACA | 1 cut(s) | 2024 |
| BsrI | ACTGG | 7 cut(s) | 159, 636, 1229, 1808, 2343, 2487, 2629 |
| BssAI | RCCGGY | 1 cut(s) | 178 |
| BssECI | CCNNGG | 8 cut(s) | 967, 1114, 1537, 1632, 2528, 2651, 2887, 3129 |
| BssSI | CACGAG | 2 cut(s) | 864, 2195 |
| BssT1I | CCWWGG | 2 cut(s) | 1632, 2528 |
| Bst2BI | CACGAG | 2 cut(s) | 864, 2195 |
| Bst2UI | CCWGG | 6 cut(s) | 575, 969, 1116, 1964, 2127, 2652 |
| Bst4CI | ACNGT | 4 cut(s) | 1710, 2578, 2737, 3214 |
| Bst6I | CTCTTC | 1 cut(s) | 718 |
| BstAFI | CTTAAG | 2 cut(s) | 1700, 2237 |
| BstAUI | TGTACA | 1 cut(s) | 2024 |
| BstBI | TTCGAA | 1 cut(s) | 723 |
| BstC8I | GCNNGC | 3 cut(s) | 423, 730, 3394 |
| BstDSI | CCRYGG | 2 cut(s) | 1632, 2528 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 1760, 1967 |
| BstF5I | GGATG | 7 cut(s) | 268, 640, 1576, 1813, 2095, 2554, 2843 |
| BstFNI | CGCG | 1 cut(s) | 3120 |
| BstH2I | RGCGCY | 1 cut(s) | 3007 |
| BstHHI | GCGC | 1 cut(s) | 3006 |
| BstMAI | GTCTC | 8 cut(s) | 626, 1113, 1443, 1772, 2084, 2567, 2584, 3241 |
| BstMCI | CGRYCG | 1 cut(s) | 3169 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 1870, 2272, 2386, 2458, 2530, 3012 |
| BstNI | CCWGG | 6 cut(s) | 575, 969, 1116, 1964, 2127, 2652 |
| BstNSI | RCATGY | 3 cut(s) | 1344, 1630, 2229 |
| BstSCI | CCNGG | 9 cut(s) | 80, 573, 967, 1114, 1537, 1962, 2125, 2650, 2794 |
| BstSLI | GKGCMC | 3 cut(s) | 276, 404, 2704 |
| BstUI | CGCG | 1 cut(s) | 3120 |
| BstV1I | GCAGC | 8 cut(s) | 461, 719, 1890, 2265, 2285, 2511, 2546, 2993 |
| BstV2I | GAAGAC | 2 cut(s) | 1227, 1769 |
| BstX2I | RGATCY | 5 cut(s) | 328, 1636, 1648, 1978, 3256 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1963 |
| BstYI | RGATCY | 5 cut(s) | 328, 1636, 1648, 1978, 3256 |
| Bsu15I | ATCGAT | 2 cut(s) | 1431, 1941 |
| Bsu36I | CCTNAGG | 1 cut(s) | 1761 |
| BsuI | GTATCC | 1 cut(s) | 2961 |
| BsuRI | GGCC | 8 cut(s) | 182, 487, 573, 836, 966, 1908, 2650, 3134 |
| BsuTUI | ATCGAT | 2 cut(s) | 1431, 1941 |
| BtgI | CCRYGG | 2 cut(s) | 1632, 2528 |
| BtgZI | GCGATG | 1 cut(s) | 1321 |
| BtrI | CACGTC | 2 cut(s) | 2565, 2756 |
| BtsCI | GGATG | 7 cut(s) | 268, 640, 1576, 1813, 2095, 2554, 2843 |
| BtsIMutI | CAGTG | 5 cut(s) | 629, 1801, 2480, 3210, 3379 |
| BtuMI | TCGCGA | 1 cut(s) | 3120 |
| Cac8I | GCNNGC | 3 cut(s) | 423, 730, 3394 |
| CfoI | GCGC | 1 cut(s) | 3006 |
| Cfr10I | RCCGGY | 1 cut(s) | 178 |
| Cfr13I | GGNCC | 4 cut(s) | 181, 486, 571, 965 |
| ClaI | ATCGAT | 2 cut(s) | 1431, 1941 |
| CseI | GACGC | 3 cut(s) | 1706, 2732, 2739 |
| Csp6I | GTAC | 7 cut(s) | 341, 804, 882, 1583, 2025, 2336, 3154 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1125, 1160 |
| CviQI | GTAC | 7 cut(s) | 341, 804, 882, 1583, 2025, 2336, 3154 |
| DraI | TTTAAA | 1 cut(s) | 567 |
| EaeI | YGGCCR | 1 cut(s) | 834 |
| Eam1104I | CTCTTC | 1 cut(s) | 718 |
| EarI | CTCTTC | 1 cut(s) | 718 |
| Ecl136II | GAGCTC | 3 cut(s) | 1078, 2389, 2461 |
| Eco130I | CCWWGG | 2 cut(s) | 1632, 2528 |
| Eco147I | AGGCCT | 2 cut(s) | 1908, 3134 |
| Eco24I | GRGCYC | 5 cut(s) | 1080, 2391, 2463, 2974, 3198 |
| Eco31I | GGTCTC | 1 cut(s) | 1772 |
| Eco47III | AGCGCT | 1 cut(s) | 3005 |
| Eco53kI | GAGCTC | 3 cut(s) | 1078, 2389, 2461 |
| Eco57I | CTGAAG | 3 cut(s) | 833, 1650, 1931 |
| Eco81I | CCTNAGG | 1 cut(s) | 1761 |
| Eco88I | CYCGRG | 3 cut(s) | 488, 1158, 2000 |
| EcoICRI | GAGCTC | 3 cut(s) | 1078, 2389, 2461 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 1760, 1967 |
| EcoO109I | RGGNCCY | 1 cut(s) | 571 |
| EcoRI | GAATTC | 2 cut(s) | 1822, 2269 |
| EcoRII | CCWGG | 6 cut(s) | 573, 967, 1114, 1962, 2125, 2650 |
| EcoT14I | CCWWGG | 2 cut(s) | 1632, 2528 |
| EcoT22I | ATGCAT | 5 cut(s) | 373, 1482, 1529, 1686, 2906 |
| EcoT38I | GRGCYC | 5 cut(s) | 1080, 2391, 2463, 2974, 3198 |
| ErhI | CCWWGG | 2 cut(s) | 1632, 2528 |
| Esp3I | CGTCTC | 1 cut(s) | 2084 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1740, 1772 |
| FaqI | GGGAC | 3 cut(s) | 874, 2791, 3371 |
| FauNDI | CATATG | 1 cut(s) | 1869 |
| FokI | GGATG | 7 cut(s) | 275, 647, 1583, 1820, 2102, 2561, 2850 |
| FriOI | GRGCYC | 5 cut(s) | 1080, 2391, 2463, 2974, 3198 |
| FspBI | CTAG | 2 cut(s) | 2397, 2570 |
| GlaI | GCGC | 1 cut(s) | 3005 |
| GsuI | CTGGAG | 2 cut(s) | 176, 963 |
| HaeII | RGCGCY | 1 cut(s) | 3007 |
| HaeIII | GGCC | 8 cut(s) | 182, 487, 573, 836, 966, 1908, 2650, 3134 |
| HapII | CCGG | 5 cut(s) | 82, 179, 1539, 2795, 3169 |
| HgaI | GACGC | 3 cut(s) | 1706, 2732, 2739 |
| HhaI | GCGC | 1 cut(s) | 3006 |
| Hin6I | GCGC | 1 cut(s) | 3004 |
| HinP1I | GCGC | 1 cut(s) | 3004 |
| HincII | GTYRAC | 1 cut(s) | 1744 |
| HindII | GTYRAC | 1 cut(s) | 1744 |
| HindIII | AAGCTT | 6 cut(s) | 209, 726, 2069, 2201, 2855, 3394 |
| HpaII | CCGG | 5 cut(s) | 82, 179, 1539, 2795, 3169 |
| HphI | GGTGA | 7 cut(s) | 168, 305, 959, 1130, 1745, 2830, 3232 |
| Hpy166II | GTNNAC | 6 cut(s) | 274, 296, 806, 1560, 1744, 1753 |
| Hpy8I | GTNNAC | 6 cut(s) | 274, 296, 806, 1560, 1744, 1753 |
| Hpy99I | CGWCG | 2 cut(s) | 2459, 2760 |
| HpyCH4III | ACNGT | 4 cut(s) | 1710, 2578, 2737, 3214 |
| HpyCH4IV | ACGT | 4 cut(s) | 118, 391, 2564, 2755 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 1870, 2272, 2386, 2458, 2530, 3012 |
| HpySE526I | ACGT | 4 cut(s) | 118, 391, 2564, 2755 |
| HspAI | GCGC | 1 cut(s) | 3004 |
| Lsp1109I | GCAGC | 8 cut(s) | 461, 719, 1890, 2265, 2285, 2511, 2546, 2993 |
| LweI | GCATC | 8 cut(s) | 358, 1360, 1378, 1467, 1671, 2068, 2112, 2539 |
| MaeI | CTAG | 2 cut(s) | 2397, 2570 |
| MaeII | ACGT | 4 cut(s) | 118, 391, 2564, 2755 |
| MfeI | CAATTG | 2 cut(s) | 1509, 1611 |
| MflI | RGATCY | 5 cut(s) | 328, 1636, 1648, 1978, 3256 |
| MhlI | GDGCHC | 8 cut(s) | 276, 404, 1080, 2391, 2463, 2704, 2974, 3198 |
| MlsI | TGGCCA | 1 cut(s) | 836 |
| MluNI | TGGCCA | 1 cut(s) | 836 |
| MlyI | GAGTC | 8 cut(s) | 500, 702, 1999, 2368, 2440, 2512, 3243, 3371 |
| MmeI | TCCRAC | 3 cut(s) | 559, 1218, 2526 |
| Mox20I | TGGCCA | 1 cut(s) | 836 |
| Mph1103I | ATGCAT | 5 cut(s) | 373, 1482, 1529, 1686, 2906 |
| MscI | TGGCCA | 1 cut(s) | 836 |
| MseI | TTAA | 8 cut(s) | 504, 566, 1047, 1179, 1530, 1701, 1931, 2238 |
| MslI | CAYNNNNRTG | 6 cut(s) | 105, 1311, 1433, 1631, 1806, 2088 |
| Msp20I | TGGCCA | 1 cut(s) | 836 |
| MspA1I | CMGCKG | 1 cut(s) | 452 |
| MspCI | CTTAAG | 2 cut(s) | 1700, 2237 |
| MspI | CCGG | 5 cut(s) | 82, 179, 1539, 2795, 3169 |
| MspR9I | CCNGG | 9 cut(s) | 82, 575, 969, 1116, 1539, 1964, 2127, 2652, 2796 |
| MunI | CAATTG | 2 cut(s) | 1509, 1611 |
| Mva1269I | GAATGC | 4 cut(s) | 1414, 1529, 1622, 2915 |
| MvaI | CCWGG | 6 cut(s) | 575, 969, 1116, 1964, 2127, 2652 |
| MvnI | CGCG | 1 cut(s) | 3120 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 1870, 2272, 2386, 2458, 2530, 3012 |
| NciI | CCSGG | 3 cut(s) | 82, 1539, 2796 |
| NcoI | CCATGG | 2 cut(s) | 1632, 2528 |
| NdeI | CATATG | 1 cut(s) | 1869 |
| NlaIV | GGNNCC | 7 cut(s) | 1638, 1974, 2408, 2971, 3173, 3195, 3303 |
| NmeAIII | GCCGAG | 1 cut(s) | 2305 |
| NmuCI | GTSAC | 7 cut(s) | 1718, 2192, 2478, 2565, 2751, 2759, 2993 |
| NruI | TCGCGA | 1 cut(s) | 3120 |
| NsiI | ATGCAT | 5 cut(s) | 373, 1482, 1529, 1686, 2906 |
| NspI | RCATGY | 3 cut(s) | 1344, 1630, 2229 |
| NspV | TTCGAA | 1 cut(s) | 723 |
| PaeR7I | CTCGAG | 2 cut(s) | 1158, 2000 |
| PceI | AGGCCT | 2 cut(s) | 1908, 3134 |
| PciI | ACATGT | 1 cut(s) | 2225 |
| PctI | GAATGC | 4 cut(s) | 1414, 1529, 1622, 2915 |
| Pfl23II | CGTACG | 1 cut(s) | 881 |
| PfoI | TCCNGGA | 1 cut(s) | 2794 |
| PleI | GAGTC | 8 cut(s) | 499, 702, 1998, 2367, 2439, 2511, 3242, 3370 |
| PpsI | GAGTC | 8 cut(s) | 499, 702, 1998, 2367, 2439, 2511, 3242, 3370 |
| PscI | ACATGT | 1 cut(s) | 2225 |
| PsiI | TTATAA | 2 cut(s) | 1296, 2675 |
| Psp124BI | GAGCTC | 3 cut(s) | 1080, 2391, 2463 |
| Psp1406I | AACGTT | 1 cut(s) | 391 |
| Psp6I | CCWGG | 6 cut(s) | 573, 967, 1114, 1962, 2125, 2650 |
| PspGI | CCWGG | 6 cut(s) | 573, 967, 1114, 1962, 2125, 2650 |
| PspLI | CGTACG | 1 cut(s) | 881 |
| PspN4I | GGNNCC | 7 cut(s) | 1638, 1974, 2408, 2971, 3173, 3195, 3303 |
| PspPI | GGNCC | 4 cut(s) | 181, 486, 571, 965 |
| PspXI | VCTCGAGB | 1 cut(s) | 1158 |
| PsuI | RGATCY | 5 cut(s) | 328, 1636, 1648, 1978, 3256 |
| RruI | TCGCGA | 1 cut(s) | 3120 |
| RsaI | GTAC | 7 cut(s) | 342, 805, 883, 1584, 2026, 2337, 3155 |
| RsaNI | GTAC | 7 cut(s) | 341, 804, 882, 1583, 2025, 2336, 3154 |
| RseI | CAYNNNNRTG | 6 cut(s) | 105, 1311, 1433, 1631, 1806, 2088 |
| SacI | GAGCTC | 3 cut(s) | 1080, 2391, 2463 |
| SaqAI | TTAA | 8 cut(s) | 504, 566, 1047, 1179, 1530, 1701, 1931, 2238 |
| Sau96I | GGNCC | 4 cut(s) | 181, 486, 571, 965 |
| SchI | GAGTC | 8 cut(s) | 500, 702, 1999, 2368, 2440, 2512, 3243, 3371 |
| ScrFI | CCNGG | 9 cut(s) | 82, 575, 969, 1116, 1539, 1964, 2127, 2652, 2796 |
| SduI | GDGCHC | 8 cut(s) | 276, 404, 1080, 2391, 2463, 2704, 2974, 3198 |
| SfaNI | GCATC | 8 cut(s) | 358, 1360, 1378, 1467, 1671, 2068, 2112, 2539 |
| Sfr274I | CTCGAG | 2 cut(s) | 1158, 2000 |
| SfuI | TTCGAA | 1 cut(s) | 723 |
| SlaI | CTCGAG | 2 cut(s) | 1158, 2000 |
| SmiMI | CAYNNNNRTG | 6 cut(s) | 105, 1311, 1433, 1631, 1806, 2088 |
| SseBI | AGGCCT | 2 cut(s) | 1908, 3134 |
| SsiI | CCGC | 2 cut(s) | 452, 3175 |
| SspI | AATATT | 1 cut(s) | 2245 |
| SspMI | CTAG | 2 cut(s) | 2397, 2570 |
| SstI | GAGCTC | 3 cut(s) | 1080, 2391, 2463 |
| StuI | AGGCCT | 2 cut(s) | 1908, 3134 |
| StyD4I | CCNGG | 9 cut(s) | 80, 573, 967, 1114, 1537, 1962, 2125, 2650, 2794 |
| StyI | CCWWGG | 2 cut(s) | 1632, 2528 |
| TaaI | ACNGT | 4 cut(s) | 1710, 2578, 2737, 3214 |
| TaiI | ACGT | 4 cut(s) | 121, 394, 2567, 2758 |
| TatI | WGTACW | 2 cut(s) | 1582, 2024 |
| TauI | GCSGC | 1 cut(s) | 3177 |
| Tru1I | TTAA | 8 cut(s) | 504, 566, 1047, 1179, 1530, 1701, 1931, 2238 |
| Tru9I | TTAA | 8 cut(s) | 504, 566, 1047, 1179, 1530, 1701, 1931, 2238 |
| TscAI | CASTG | 5 cut(s) | 636, 1808, 2487, 3217, 3379 |
| TseFI | GTSAC | 7 cut(s) | 1718, 2192, 2478, 2565, 2751, 2759, 2993 |
| Tsp45I | GTSAC | 7 cut(s) | 1718, 2192, 2478, 2565, 2751, 2759, 2993 |
| TspGWI | ACGGA | 2 cut(s) | 1183, 2719 |
| TspRI | CASTG | 5 cut(s) | 636, 1808, 2487, 3217, 3379 |
| Vha464I | CTTAAG | 2 cut(s) | 1700, 2237 |
| VneI | GTGCAC | 1 cut(s) | 272 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 1760, 1967 |
| XapI | RAATTY | 5 cut(s) | 1253, 1822, 2109, 2269, 2805 |
| XceI | RCATGY | 3 cut(s) | 1344, 1630, 2229 |
| XhoI | CTCGAG | 2 cut(s) | 1158, 2000 |
| XspI | CTAG | 2 cut(s) | 2397, 2570 |
| Zsp2I | ATGCAT | 5 cut(s) | 373, 1482, 1529, 1686, 2906 |